Wall clock time and date at job start Tue Mar 31 2020 19:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 C 1.50704 * 109.47353 * 180.02562 * 3 2 1 5 5 C 1.38036 * 126.29138 * 270.00251 * 4 3 2 6 6 C 1.47430 * 126.41575 * 0.02562 * 5 4 3 7 7 O 1.21608 * 120.00039 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00345 * 180.02562 * 6 5 4 9 9 C 1.46491 * 120.00316 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.45825 * 35.03075 * 9 8 6 11 11 C 1.53035 * 109.46518 * 275.06924 * 9 8 6 12 12 C 1.53195 * 109.31549 * 178.61321 * 11 9 8 13 13 N 1.46921 * 108.77399 * 54.63842 * 12 11 9 14 14 C 1.36940 * 120.63230 * 126.37129 * 13 12 11 15 15 H 1.08000 * 120.00042 * 209.06445 * 14 13 12 16 16 C 1.38811 * 119.99702 * 29.07029 * 14 13 12 17 17 N 1.31615 * 120.00416 * 15.03530 * 16 14 13 18 18 Si 1.86804 * 119.99792 * 195.04077 * 16 14 13 19 19 H 1.48499 * 109.47142 * 59.99358 * 18 16 14 20 20 H 1.48494 * 109.47471 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46891 * 299.99749 * 18 16 14 22 22 C 1.46930 * 118.73819 * 306.38577 * 13 12 11 23 23 H 1.08997 * 109.58964 * 293.83000 * 22 13 12 24 24 C 1.52999 * 109.58735 * 173.39848 * 22 13 12 25 25 C 1.53041 * 109.45993 * 155.00114 * 9 8 6 26 26 C 1.41285 * 107.17200 * 180.02562 * 5 4 3 27 27 N 1.30448 * 108.02513 * 0.22793 * 26 5 4 28 28 N 1.34256 * 126.29124 * 90.02444 * 4 3 2 29 29 C 1.46504 * 125.75276 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46807 * 299.99665 * 1 2 3 32 32 H 1.08997 * 109.46948 * 59.99622 * 1 2 3 33 33 H 1.09000 * 109.46807 * 240.00335 * 2 1 3 34 34 H 1.08997 * 109.47690 * 120.00426 * 2 1 3 35 35 H 1.09000 * 109.46918 * 60.00402 * 3 2 1 36 36 H 1.09003 * 109.47077 * 300.00347 * 3 2 1 37 37 H 0.97004 * 119.99378 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.49968 * 298.56988 * 11 9 8 39 39 H 1.09003 * 109.49855 * 58.66118 * 11 9 8 40 40 H 1.09001 * 109.58716 * 294.84600 * 12 11 9 41 41 H 1.09003 * 109.70045 * 174.49567 * 12 11 9 42 42 H 0.96995 * 120.00394 * 180.02562 * 17 16 14 43 43 H 1.09013 * 109.46940 * 300.71564 * 24 22 13 44 44 H 1.08993 * 109.47139 * 60.70949 * 24 22 13 45 45 H 1.08992 * 109.47459 * 180.71779 * 24 22 13 46 46 H 1.08997 * 109.50121 * 301.33859 * 25 9 8 47 47 H 1.09000 * 109.49979 * 61.40238 * 25 9 8 48 48 H 1.08005 * 125.99114 * 179.97438 * 26 5 4 49 49 H 1.09003 * 109.47041 * 90.00193 * 29 28 4 50 50 H 1.09007 * 109.47257 * 210.00043 * 29 28 4 51 51 H 1.08993 * 109.47506 * 329.99933 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3646 1.4423 1.1116 6 6 3.9269 1.4415 2.5195 7 8 2.7407 1.4414 2.7875 8 7 4.8414 1.4419 3.5095 9 6 4.4065 1.4417 4.9084 10 1 3.4953 0.8513 5.0053 11 6 4.1327 2.8788 5.3576 12 6 3.6451 2.8716 6.8098 13 7 4.6292 2.1585 7.6355 14 6 5.1609 2.7472 8.7517 15 1 6.1555 2.4832 9.0796 16 6 4.4215 3.6832 9.4617 17 7 3.1264 3.7930 9.2549 18 14 5.2648 4.7871 10.7106 19 1 6.3094 5.5952 10.0315 20 1 4.2625 5.6925 11.3276 21 1 5.8932 3.9515 11.7652 22 6 5.0322 0.8019 7.2406 23 1 4.1823 0.1261 7.3353 24 6 6.1741 0.3239 8.1398 25 6 5.5043 0.8324 5.7835 26 6 5.6993 1.4430 0.6483 27 7 5.6738 1.4485 -0.6559 28 7 4.3413 1.4431 -1.0831 29 6 3.8890 1.4434 -2.4766 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 5.7876 1.4431 3.2957 38 1 5.0495 3.4637 5.2845 39 1 3.3674 3.3200 4.7190 40 1 2.6820 2.3645 6.8694 41 1 3.5415 3.8960 7.1677 42 1 2.6098 4.4473 9.7507 43 1 7.0195 1.0058 8.0470 44 1 5.8363 0.3030 9.1759 45 1 6.4801 -0.6775 7.8371 46 1 5.7152 -0.1831 5.4482 47 1 6.4085 1.4362 5.7060 48 1 6.5855 1.4434 1.2657 49 1 3.7765 2.4712 -2.8219 50 1 4.6236 0.9300 -3.0971 51 1 2.9306 0.9293 -2.5477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947492277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:26 Heat of formation + Delta-G solvation = 42.951031 kcal Electronic energy + Delta-G solvation = -29644.419895 eV Core-core repulsion = 25773.380414 eV Total energy + Delta-G solvation = -3871.039481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.64833 -39.22659 -37.45506 -35.52154 -34.36659 -33.52064 -32.33551 -31.30994 -30.71781 -29.48869 -27.38934 -26.71905 -26.25339 -24.72110 -22.87610 -21.93419 -21.88847 -20.98780 -19.95536 -19.81446 -19.03486 -17.56982 -16.34404 -15.93600 -15.92107 -15.55627 -15.11987 -14.96354 -14.71859 -14.37818 -13.93758 -13.82819 -13.68669 -13.48471 -13.34388 -13.14599 -13.00746 -12.90300 -12.67389 -12.53197 -12.41545 -11.68691 -11.54594 -11.48842 -11.15971 -11.14189 -11.02112 -10.87406 -10.82187 -10.75447 -10.60532 -10.27145 -10.06070 -9.98189 -9.68674 -9.65127 -9.59708 -9.27303 -8.80713 -8.52211 -8.32623 -6.58877 -5.71984 -3.15830 1.40668 2.09374 2.11988 3.41131 3.47549 3.47954 3.56549 3.65255 4.21376 4.27045 4.53291 4.63474 4.73220 4.78860 4.84999 5.00082 5.05728 5.10109 5.27485 5.33302 5.38105 5.45422 5.48911 5.52139 5.63442 5.68007 5.72060 5.85522 5.91302 6.07106 6.09499 6.10627 6.21845 6.25364 6.34468 6.37197 6.48636 6.54150 6.59739 6.64225 6.73877 6.88108 7.00457 7.10379 7.15356 7.36778 7.46152 7.76353 7.86746 7.90746 8.52242 8.60716 9.27840 9.91616 10.48649 11.36516 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002595 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.647127 B =10785.419334 C =11223.052332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.066 4.066 4 C 0.158 3.842 5 C -0.290 4.290 6 C 0.591 3.409 7 O -0.546 6.546 8 N -0.721 5.721 9 C 0.154 3.846 10 H 0.081 0.919 11 C -0.146 4.146 12 C 0.175 3.825 13 N -0.588 5.588 14 C -0.250 4.250 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.900 3.100 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.172 3.828 23 H 0.027 0.973 24 C -0.135 4.135 25 C -0.134 4.134 26 C 0.082 3.918 27 N -0.301 5.301 28 N -0.365 5.365 29 C 0.096 3.904 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.392 0.608 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.090 0.910 42 H 0.253 0.747 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.189 0.811 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 -6.951 -22.743 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.105 4.105 4 C 0.026 3.974 5 C -0.305 4.305 6 C 0.378 3.622 7 O -0.425 6.425 8 N -0.370 5.370 9 C 0.051 3.949 10 H 0.099 0.901 11 C -0.186 4.186 12 C 0.048 3.952 13 N -0.311 5.311 14 C -0.380 4.380 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.064 3.936 23 H 0.044 0.956 24 C -0.193 4.193 25 C -0.174 4.174 26 C -0.105 4.105 27 N -0.121 5.121 28 N -0.145 5.145 29 C -0.045 4.045 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.225 0.775 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.206 0.794 49 H 0.096 0.904 50 H 0.111 0.889 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.535 -6.835 -23.664 24.637 hybrid contribution 0.554 0.715 1.129 1.447 sum 1.089 -6.120 -22.535 23.376 Atomic orbital electron populations 1.21740 0.94936 1.01895 1.02157 1.21383 0.96355 0.94898 1.02281 1.20572 0.85704 0.99224 1.04965 1.21531 0.94625 0.95058 0.86211 1.20143 0.92697 1.23667 0.93985 1.17171 0.85720 0.75860 0.83450 1.90735 1.16431 1.51164 1.84150 1.46072 1.09053 1.75206 1.06674 1.20996 0.98084 0.98065 0.77764 0.90078 1.22562 1.00773 0.94828 1.00464 1.20757 0.90100 0.99388 0.84923 1.44164 1.49381 1.10391 1.27181 1.19133 0.96924 1.19532 1.02385 0.91308 1.25086 0.94884 1.01665 0.98020 1.70002 1.04614 1.36499 1.43648 0.86406 0.78508 0.80733 0.81300 1.21132 1.21730 1.20960 1.20354 0.94811 0.88244 0.90183 0.95588 1.21793 0.98492 0.98342 1.00670 1.22379 0.98017 0.99200 0.97805 1.24026 0.97356 0.97204 0.91951 1.77160 0.96018 1.25539 1.13345 1.48319 1.04086 1.55805 1.06267 1.21942 1.01255 1.03751 0.77538 0.92535 0.91836 0.92952 0.92808 0.90831 0.86710 0.90956 0.77479 0.92793 0.92886 0.96259 0.89226 0.93643 0.92775 0.91938 0.94330 0.92734 0.91863 0.79433 0.90375 0.88913 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.11 -1.03 5.92 -26.73 -0.16 -1.19 16 3 C -0.07 -0.66 4.67 -27.88 -0.13 -0.79 16 4 C 0.16 1.85 6.26 -81.60 -0.51 1.34 16 5 C -0.29 -3.84 6.13 -105.07 -0.64 -4.48 16 6 C 0.59 9.20 7.78 -12.52 -0.10 9.10 16 7 O -0.55 -10.08 14.50 5.27 0.08 -10.01 16 8 N -0.72 -10.51 5.07 -54.84 -0.28 -10.78 16 9 C 0.15 2.71 2.41 -67.90 -0.16 2.55 16 10 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 11 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 12 C 0.17 4.25 5.29 -3.71 -0.02 4.23 16 13 N -0.59 -14.43 2.99 -164.77 -0.49 -14.92 16 14 C -0.25 -6.67 8.61 -15.06 -0.13 -6.80 16 15 H 0.07 1.78 6.20 -52.49 -0.33 1.45 16 16 C 0.00 0.05 4.96 -17.43 -0.09 -0.03 16 17 N -0.90 -26.30 11.14 55.49 0.62 -25.68 16 18 Si 0.90 21.66 29.58 -169.99 -5.03 16.64 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.17 3.50 3.50 -67.59 -0.24 3.26 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 C -0.14 -2.49 7.95 37.16 0.30 -2.20 16 25 C -0.13 -2.25 4.84 -26.61 -0.13 -2.38 16 26 C 0.08 0.95 11.50 -16.98 -0.20 0.75 16 27 N -0.30 -3.65 12.50 30.86 0.39 -3.27 16 28 N -0.37 -3.84 3.98 -63.34 -0.25 -4.09 16 29 C 0.10 0.56 11.06 59.85 0.66 1.23 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.44 6.50 -51.93 -0.34 1.10 16 36 H 0.07 0.54 7.69 -51.93 -0.40 0.14 16 37 H 0.39 4.59 7.56 -40.82 -0.31 4.28 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.05 1.00 7.40 -51.92 -0.38 0.61 16 44 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.19 1.57 7.50 -52.48 -0.39 1.17 16 49 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 0.35 7.62 -51.93 -0.40 -0.04 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -32.92 401.58 -8.95 -41.87 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.70 Total: 3.56 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.33 Total: 0.63 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.02 Total: -58.74 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.92 -8.95 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947492277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.817 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds