Wall clock time and date at job start Tue Mar 31 2020 19:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 C 1.50704 * 109.47353 * 180.02562 * 3 2 1 5 5 C 1.38036 * 126.29138 * 270.00251 * 4 3 2 6 6 C 1.47430 * 126.41575 * 0.02562 * 5 4 3 7 7 O 1.21608 * 120.00039 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00345 * 180.02562 * 6 5 4 9 9 C 1.46491 * 120.00316 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.45825 * 35.03075 * 9 8 6 11 11 C 1.53035 * 109.46518 * 275.06924 * 9 8 6 12 12 C 1.53195 * 109.31549 * 178.61321 * 11 9 8 13 13 N 1.46921 * 108.77399 * 54.63842 * 12 11 9 14 14 C 1.36940 * 120.63230 * 126.37129 * 13 12 11 15 15 H 1.08000 * 120.00042 * 209.06445 * 14 13 12 16 16 C 1.38811 * 119.99702 * 29.07029 * 14 13 12 17 17 N 1.31615 * 120.00416 * 15.03530 * 16 14 13 18 18 Si 1.86804 * 119.99792 * 195.04077 * 16 14 13 19 19 H 1.48499 * 109.47142 * 59.99358 * 18 16 14 20 20 H 1.48494 * 109.47471 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46891 * 299.99749 * 18 16 14 22 22 C 1.46930 * 118.73819 * 306.38577 * 13 12 11 23 23 H 1.08997 * 109.58964 * 293.83000 * 22 13 12 24 24 C 1.52999 * 109.58735 * 173.39848 * 22 13 12 25 25 C 1.53041 * 109.45993 * 155.00114 * 9 8 6 26 26 C 1.41285 * 107.17200 * 180.02562 * 5 4 3 27 27 N 1.30448 * 108.02513 * 0.22793 * 26 5 4 28 28 N 1.34256 * 126.29124 * 90.02444 * 4 3 2 29 29 C 1.46504 * 125.75276 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46807 * 299.99665 * 1 2 3 32 32 H 1.08997 * 109.46948 * 59.99622 * 1 2 3 33 33 H 1.09000 * 109.46807 * 240.00335 * 2 1 3 34 34 H 1.08997 * 109.47690 * 120.00426 * 2 1 3 35 35 H 1.09000 * 109.46918 * 60.00402 * 3 2 1 36 36 H 1.09003 * 109.47077 * 300.00347 * 3 2 1 37 37 H 0.97004 * 119.99378 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.49968 * 298.56988 * 11 9 8 39 39 H 1.09003 * 109.49855 * 58.66118 * 11 9 8 40 40 H 1.09001 * 109.58716 * 294.84600 * 12 11 9 41 41 H 1.09003 * 109.70045 * 174.49567 * 12 11 9 42 42 H 0.96995 * 120.00394 * 180.02562 * 17 16 14 43 43 H 1.09013 * 109.46940 * 300.71564 * 24 22 13 44 44 H 1.08993 * 109.47139 * 60.70949 * 24 22 13 45 45 H 1.08992 * 109.47459 * 180.71779 * 24 22 13 46 46 H 1.08997 * 109.50121 * 301.33859 * 25 9 8 47 47 H 1.09000 * 109.49979 * 61.40238 * 25 9 8 48 48 H 1.08005 * 125.99114 * 179.97438 * 26 5 4 49 49 H 1.09003 * 109.47041 * 90.00193 * 29 28 4 50 50 H 1.09007 * 109.47257 * 210.00043 * 29 28 4 51 51 H 1.08993 * 109.47506 * 329.99933 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3646 1.4423 1.1116 6 6 3.9269 1.4415 2.5195 7 8 2.7407 1.4414 2.7875 8 7 4.8414 1.4419 3.5095 9 6 4.4065 1.4417 4.9084 10 1 3.4953 0.8513 5.0053 11 6 4.1327 2.8788 5.3576 12 6 3.6451 2.8716 6.8098 13 7 4.6292 2.1585 7.6355 14 6 5.1609 2.7472 8.7517 15 1 6.1555 2.4832 9.0796 16 6 4.4215 3.6832 9.4617 17 7 3.1264 3.7930 9.2549 18 14 5.2648 4.7871 10.7106 19 1 6.3094 5.5952 10.0315 20 1 4.2625 5.6925 11.3276 21 1 5.8932 3.9515 11.7652 22 6 5.0322 0.8019 7.2406 23 1 4.1823 0.1261 7.3353 24 6 6.1741 0.3239 8.1398 25 6 5.5043 0.8324 5.7835 26 6 5.6993 1.4430 0.6483 27 7 5.6738 1.4485 -0.6559 28 7 4.3413 1.4431 -1.0831 29 6 3.8890 1.4434 -2.4766 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 5.7876 1.4431 3.2957 38 1 5.0495 3.4637 5.2845 39 1 3.3674 3.3200 4.7190 40 1 2.6820 2.3645 6.8694 41 1 3.5415 3.8960 7.1677 42 1 2.6098 4.4473 9.7507 43 1 7.0195 1.0058 8.0470 44 1 5.8363 0.3030 9.1759 45 1 6.4801 -0.6775 7.8371 46 1 5.7152 -0.1831 5.4482 47 1 6.4085 1.4362 5.7060 48 1 6.5855 1.4434 1.2657 49 1 3.7765 2.4712 -2.8219 50 1 4.6236 0.9300 -3.0971 51 1 2.9306 0.9293 -2.5477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947492277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:25 Heat of formation + Delta-G solvation = 22.137306 kcal Electronic energy + Delta-G solvation = -29645.322446 eV Core-core repulsion = 25773.380414 eV Total energy + Delta-G solvation = -3871.942032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.52280 -40.57718 -39.03595 -36.40044 -35.82173 -34.36001 -34.07442 -32.88865 -31.72740 -31.10407 -28.41163 -27.72139 -27.42486 -26.54605 -24.13870 -23.44790 -22.69068 -22.30202 -21.24020 -21.09248 -20.38932 -18.66101 -18.15056 -17.21308 -16.81449 -16.72984 -16.64249 -15.86699 -15.78525 -15.58785 -15.55609 -15.37981 -14.94751 -14.75718 -14.47354 -14.39213 -14.29435 -13.99945 -13.53417 -13.46768 -13.30311 -13.13972 -12.89197 -12.69483 -12.64328 -12.57475 -12.43995 -12.32070 -12.19911 -12.08132 -11.96274 -11.79798 -11.67929 -11.55369 -11.44577 -11.24460 -10.72404 -10.51278 -10.38705 -9.99877 -9.55587 -8.61608 -7.80514 -5.26946 0.49449 1.16447 1.40369 1.49029 1.51493 1.57614 2.35909 2.51502 2.55101 3.35369 3.46661 3.51702 3.63881 3.87994 3.91076 4.06341 4.10934 4.13900 4.19175 4.31710 4.38553 4.40841 4.44866 4.52218 4.58694 4.64688 4.65970 4.75395 4.78372 4.80689 4.85737 4.91352 4.97459 4.99853 5.13238 5.14694 5.19136 5.21961 5.32675 5.40101 5.41482 5.43735 5.53726 5.58942 5.67435 5.74892 5.76645 5.88374 6.46125 6.50398 6.75991 7.20273 7.42530 7.92435 8.45266 9.26648 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002595 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.647127 B =10785.419334 C =11223.052332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.063 4.063 4 C 0.159 3.841 5 C -0.318 4.318 6 C 0.589 3.411 7 O -0.583 6.583 8 N -0.709 5.709 9 C 0.167 3.833 10 H 0.056 0.944 11 C -0.129 4.129 12 C 0.184 3.816 13 N -0.603 5.603 14 C -0.248 4.248 15 H 0.080 0.920 16 C -0.058 4.058 17 N -0.942 5.942 18 Si 0.964 3.036 19 H -0.278 1.278 20 H -0.300 1.300 21 H -0.274 1.274 22 C 0.160 3.840 23 H 0.011 0.989 24 C -0.127 4.127 25 C -0.118 4.118 26 C 0.087 3.913 27 N -0.320 5.320 28 N -0.360 5.360 29 C 0.083 3.917 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.410 0.590 38 H 0.059 0.941 39 H 0.043 0.957 40 H -0.014 1.014 41 H 0.055 0.945 42 H 0.246 0.754 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.215 0.785 49 H 0.093 0.907 50 H 0.103 0.897 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -7.918 -25.291 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.101 4.101 4 C 0.024 3.976 5 C -0.333 4.333 6 C 0.378 3.622 7 O -0.464 6.464 8 N -0.359 5.359 9 C 0.062 3.938 10 H 0.074 0.926 11 C -0.169 4.169 12 C 0.057 3.943 13 N -0.327 5.327 14 C -0.378 4.378 15 H 0.098 0.902 16 C -0.252 4.252 17 N -0.588 5.588 18 Si 0.793 3.207 19 H -0.204 1.204 20 H -0.227 1.227 21 H -0.199 1.199 22 C 0.053 3.947 23 H 0.028 0.972 24 C -0.184 4.184 25 C -0.157 4.157 26 C -0.101 4.101 27 N -0.139 5.139 28 N -0.138 5.138 29 C -0.056 4.056 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.247 0.753 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.004 0.996 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.232 0.768 49 H 0.111 0.889 50 H 0.122 0.878 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.834 -7.830 -26.264 27.552 hybrid contribution -0.196 0.955 1.820 2.064 sum 2.638 -6.875 -24.444 25.529 Atomic orbital electron populations 1.21726 0.94080 1.02394 1.02290 1.21322 0.97047 0.94238 1.01717 1.20558 0.84883 0.99680 1.05027 1.21747 0.95287 0.94060 0.86464 1.20038 0.94110 1.26312 0.92841 1.17552 0.85201 0.74881 0.84550 1.90725 1.18081 1.52807 1.84828 1.45763 1.10011 1.75038 1.05079 1.20599 0.97808 0.95618 0.79765 0.92590 1.22299 1.00330 0.97013 0.97287 1.20449 0.89305 0.97000 0.87530 1.44421 1.49080 1.12269 1.26911 1.19532 0.97207 1.18844 1.02262 0.90210 1.25868 0.95385 1.03553 1.00426 1.70188 1.06130 1.37357 1.45171 0.85386 0.77269 0.78847 0.79237 1.20392 1.22690 1.19934 1.20639 0.95203 0.85734 0.93087 0.97162 1.21709 0.97328 1.00543 0.98826 1.22185 0.97496 1.01364 0.94689 1.24418 0.97473 0.96149 0.92014 1.77126 0.97085 1.26132 1.13563 1.48664 1.03372 1.54327 1.07463 1.22384 1.02676 1.05336 0.75242 0.91879 0.93783 0.90716 0.90699 0.93948 0.89671 0.87799 0.75339 0.92250 0.93834 0.99552 0.92649 0.94463 0.92582 0.94210 0.90443 0.89327 0.90603 0.76816 0.88852 0.87796 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.54 16 2 C -0.10 -1.85 5.92 30.59 0.18 -1.67 16 3 C -0.06 -1.20 4.67 29.85 0.14 -1.06 16 4 C 0.16 3.50 6.26 42.14 0.26 3.76 16 5 C -0.32 -8.09 6.13 -20.16 -0.12 -8.22 16 6 C 0.59 18.31 7.78 86.66 0.67 18.99 16 7 O -0.58 -22.39 14.50 -4.06 -0.06 -22.45 16 8 N -0.71 -19.83 5.07 -445.68 -2.26 -22.09 16 9 C 0.17 5.82 2.41 45.02 0.11 5.93 16 10 H 0.06 2.27 7.58 -2.38 -0.02 2.25 16 11 C -0.13 -5.32 5.65 30.67 0.17 -5.15 16 12 C 0.18 9.41 5.29 86.36 0.46 9.86 16 13 N -0.60 -30.16 2.99 -675.21 -2.02 -32.18 16 14 C -0.25 -13.37 8.61 84.03 0.72 -12.64 16 15 H 0.08 4.06 6.20 -2.91 -0.02 4.04 16 16 C -0.06 -3.26 4.96 84.86 0.42 -2.84 16 17 N -0.94 -57.35 11.14 21.65 0.24 -57.11 16 18 Si 0.96 45.29 29.58 68.60 2.03 47.32 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.16 6.41 3.50 44.98 0.16 6.57 16 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 24 C -0.13 -4.40 7.95 71.98 0.57 -3.83 16 25 C -0.12 -3.71 4.84 30.67 0.15 -3.56 16 26 C 0.09 1.81 11.50 85.65 0.99 2.80 16 27 N -0.32 -7.01 12.50 -56.27 -0.70 -7.71 16 28 N -0.36 -6.67 3.98 -354.30 -1.41 -8.08 16 29 C 0.08 0.70 11.06 127.77 1.41 2.11 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 2.20 6.50 -2.39 -0.02 2.19 16 36 H 0.10 1.28 7.69 -2.39 -0.02 1.26 16 37 H 0.41 8.54 7.56 -92.71 -0.70 7.84 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.06 3.20 6.06 -2.39 -0.01 3.18 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.06 1.92 7.40 -2.38 -0.02 1.90 16 44 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 48 H 0.22 2.93 7.50 -2.91 -0.02 2.91 16 49 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 51 H 0.11 0.43 7.62 -2.39 -0.02 0.42 16 Total: -1.00 -75.63 401.58 3.04 -72.59 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.22 Total: 20.21 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 7.01 Total: 9.50 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -6.15 Total: -127.17 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -75.63 3.04 -72.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947492277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.724 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds