Wall clock time and date at job start Tue Mar 31 2020 19:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 C 1.50699 * 109.46820 * 179.97438 * 3 2 1 5 5 C 1.38047 * 126.29378 * 269.99667 * 4 3 2 6 6 C 1.47431 * 126.41099 * 0.02744 * 5 4 3 7 7 O 1.21598 * 120.00089 * 359.71617 * 6 5 4 8 8 N 1.34779 * 119.99814 * 179.70802 * 6 5 4 9 9 C 1.46498 * 119.99875 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.45152 * 34.96276 * 9 8 6 11 11 C 1.53046 * 109.45913 * 274.99974 * 9 8 6 12 12 C 1.53188 * 109.31092 * 301.34663 * 11 9 8 13 13 N 1.46931 * 108.77869 * 305.36514 * 12 11 9 14 14 C 1.36932 * 120.62871 * 233.63324 * 13 12 11 15 15 H 1.08005 * 119.99978 * 150.15161 * 14 13 12 16 16 C 1.38813 * 120.00560 * 330.15180 * 14 13 12 17 17 N 1.31625 * 119.99447 * 344.50127 * 16 14 13 18 18 Si 1.86792 * 120.00223 * 164.49497 * 16 14 13 19 19 H 1.48498 * 109.47190 * 60.00614 * 18 16 14 20 20 H 1.48508 * 109.47035 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47394 * 300.00011 * 18 16 14 22 22 C 1.46923 * 118.73813 * 53.60423 * 13 12 11 23 23 H 1.09007 * 109.58667 * 66.18406 * 22 13 12 24 24 C 1.52995 * 109.58613 * 186.60624 * 22 13 12 25 25 C 1.53044 * 109.45887 * 154.93369 * 9 8 6 26 26 C 1.41285 * 107.17171 * 179.76485 * 5 4 3 27 27 N 1.30449 * 108.02326 * 0.24202 * 26 5 4 28 28 N 1.34257 * 126.29402 * 90.18475 * 4 3 2 29 29 C 1.46508 * 125.75268 * 359.97438 * 28 4 3 30 30 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47094 * 300.00325 * 1 2 3 32 32 H 1.09005 * 109.46946 * 59.99629 * 1 2 3 33 33 H 1.08997 * 109.46988 * 239.99722 * 2 1 3 34 34 H 1.08996 * 109.46928 * 120.00271 * 2 1 3 35 35 H 1.08998 * 109.47083 * 60.00413 * 3 2 1 36 36 H 1.08996 * 109.47394 * 299.99986 * 3 2 1 37 37 H 0.97001 * 119.99734 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.49811 * 181.39419 * 11 9 8 39 39 H 1.08999 * 109.49603 * 61.29542 * 11 9 8 40 40 H 1.09006 * 109.59224 * 65.15135 * 12 11 9 41 41 H 1.09004 * 109.58959 * 185.57515 * 12 11 9 42 42 H 0.96997 * 119.99477 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.47341 * 179.29388 * 24 22 13 44 44 H 1.09001 * 109.47548 * 299.29008 * 24 22 13 45 45 H 1.09005 * 109.47137 * 59.29660 * 24 22 13 46 46 H 1.09003 * 109.49328 * 178.60599 * 25 9 8 47 47 H 1.08998 * 109.49532 * 298.66426 * 25 9 8 48 48 H 1.08006 * 125.98753 * 180.20939 * 26 5 4 49 49 H 1.09001 * 109.46943 * 270.26940 * 29 28 4 50 50 H 1.09003 * 109.46794 * 30.26715 * 29 28 4 51 51 H 1.08997 * 109.46917 * 150.26474 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3637 1.4426 1.1136 6 6 3.9248 1.4423 2.5211 7 8 2.7385 1.4471 2.7881 8 7 4.8385 1.4366 3.5119 9 6 4.4024 1.4358 4.9104 10 1 3.4878 0.8505 5.0051 11 6 4.1366 2.8736 5.3625 12 6 5.4146 3.7015 5.1954 13 7 6.5077 3.0347 5.9161 14 6 7.2496 3.7161 6.8437 15 1 7.6850 3.1891 7.6798 16 6 7.4421 5.0843 6.7094 17 7 7.1859 5.6754 5.5616 18 14 8.0646 6.0864 8.1577 19 1 9.3947 5.5766 8.5772 20 1 8.1838 7.5119 7.7585 21 1 7.1097 5.9678 9.2887 22 6 6.7892 1.6228 5.6230 23 1 7.1530 1.5275 4.5998 24 6 7.8457 1.0976 6.5970 25 6 5.4959 0.8181 5.7851 26 6 5.6988 1.4368 0.6514 27 7 5.6743 1.4387 -0.6529 28 7 4.3422 1.4457 -1.0811 29 6 3.8912 1.4494 -2.4751 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 5.7848 1.4330 3.2989 38 1 3.8359 2.8759 6.4102 39 1 3.3416 3.3050 4.7543 40 1 5.6663 3.7758 4.1375 41 1 5.2603 4.6989 5.6073 42 1 7.3200 6.6314 5.4679 43 1 8.0440 0.0467 6.3860 44 1 8.7651 1.6713 6.4800 45 1 7.4808 1.2003 7.6190 46 1 5.1823 0.8398 6.8288 47 1 5.6677 -0.2136 5.4783 48 1 6.5844 1.4323 1.2696 49 1 3.7750 0.4227 -2.8221 50 1 2.9347 1.9674 -2.5460 51 1 4.6282 1.9611 -3.0940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947492279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:40 Heat of formation + Delta-G solvation = 45.498354 kcal Electronic energy + Delta-G solvation = -30260.586361 eV Core-core repulsion = 26389.657340 eV Total energy + Delta-G solvation = -3870.929021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.49707 -39.31383 -37.40906 -35.41200 -34.11116 -33.40158 -32.26318 -31.22023 -30.59539 -29.58665 -27.22905 -26.62259 -26.28237 -24.89141 -22.84846 -21.94076 -21.85208 -20.86071 -20.38405 -19.50806 -18.49034 -17.51705 -16.34157 -15.93606 -15.75071 -15.30319 -15.06447 -14.90971 -14.58631 -14.41763 -13.92268 -13.79343 -13.71186 -13.53430 -13.28599 -13.01190 -12.87199 -12.84560 -12.55012 -12.36274 -12.31899 -11.77586 -11.60094 -11.44551 -11.36662 -11.14656 -11.01525 -10.95197 -10.66980 -10.65421 -10.57069 -10.37258 -10.09011 -10.03717 -9.61163 -9.48041 -9.39530 -9.24093 -8.68217 -8.42439 -8.33396 -6.58001 -5.73897 -3.18174 1.54812 2.26283 2.27746 3.40166 3.46497 3.47216 3.69623 3.80600 4.34706 4.39167 4.52039 4.72008 4.81196 4.91770 4.95084 5.09135 5.14720 5.20269 5.33518 5.38527 5.41246 5.46518 5.55748 5.56982 5.68064 5.69859 5.74449 5.81570 5.93979 6.06601 6.13646 6.14470 6.18576 6.31512 6.36131 6.43539 6.44830 6.49865 6.64339 6.71837 6.78477 6.86023 7.02085 7.09462 7.14289 7.44478 7.53649 7.74115 7.85716 8.05102 8.50646 8.72324 9.26142 9.89834 10.47030 11.34095 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.003051 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.073696 B = 9174.933989 C = 9590.515682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.064 4.064 4 C 0.155 3.845 5 C -0.288 4.288 6 C 0.594 3.406 7 O -0.556 6.556 8 N -0.709 5.709 9 C 0.158 3.842 10 H 0.072 0.928 11 C -0.153 4.153 12 C 0.177 3.823 13 N -0.586 5.586 14 C -0.251 4.251 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.899 3.101 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.284 1.284 22 C 0.169 3.831 23 H 0.019 0.981 24 C -0.137 4.137 25 C -0.139 4.139 26 C 0.087 3.913 27 N -0.301 5.301 28 N -0.366 5.366 29 C 0.098 3.902 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.083 0.917 42 H 0.253 0.747 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.190 0.810 49 H 0.076 0.924 50 H 0.088 0.912 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 -11.588 -13.501 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.103 4.103 4 C 0.023 3.977 5 C -0.303 4.303 6 C 0.382 3.618 7 O -0.437 6.437 8 N -0.360 5.360 9 C 0.053 3.947 10 H 0.090 0.910 11 C -0.193 4.193 12 C 0.051 3.949 13 N -0.310 5.310 14 C -0.381 4.381 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.730 3.270 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.211 1.211 22 C 0.062 3.938 23 H 0.037 0.963 24 C -0.194 4.194 25 C -0.179 4.179 26 C -0.101 4.101 27 N -0.120 5.120 28 N -0.145 5.145 29 C -0.044 4.044 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.207 0.793 49 H 0.095 0.905 50 H 0.107 0.893 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.285 -11.392 -14.563 20.690 hybrid contribution 0.514 0.748 1.216 1.517 sum -8.770 -10.644 -13.347 19.193 Atomic orbital electron populations 1.21738 0.95097 1.01749 1.02067 1.21368 0.96164 0.95048 1.02266 1.20538 0.85878 0.99044 1.04805 1.21474 0.94483 0.95484 0.86288 1.20104 0.92705 1.23538 0.93913 1.17129 0.85563 0.75602 0.83538 1.90679 1.16509 1.52148 1.84321 1.45896 1.09601 1.74393 1.06068 1.20837 0.97052 0.97492 0.79270 0.90986 1.22548 1.00770 0.95663 1.00342 1.20689 0.83619 0.95803 0.94785 1.44116 1.34723 1.05755 1.46400 1.19105 1.27322 0.90525 1.01143 0.91427 1.25084 0.99970 0.98249 0.96183 1.70019 1.52450 1.09858 1.22218 0.86424 0.78774 0.79337 0.82514 1.20978 1.21767 1.21105 1.20371 0.91539 0.86270 0.95626 0.96311 1.21803 0.99769 0.98110 0.99755 1.22365 0.97409 0.98239 0.99856 1.24074 0.97476 0.96627 0.91903 1.77182 0.95809 1.25625 1.13369 1.48312 1.04174 1.55870 1.06185 1.21910 1.01233 1.03550 0.77658 0.92637 0.91982 0.92954 0.92768 0.90928 0.86845 0.91056 0.76594 0.91990 0.92802 0.96313 0.89921 0.93721 0.94352 0.91995 0.92707 0.90774 0.92652 0.79345 0.90506 0.89333 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.11 -1.07 5.92 -26.73 -0.16 -1.23 16 3 C -0.06 -0.69 4.91 -27.88 -0.14 -0.83 16 4 C 0.15 2.03 6.26 -81.60 -0.51 1.52 16 5 C -0.29 -4.35 6.13 -105.07 -0.64 -4.99 16 6 C 0.59 10.03 7.78 -12.52 -0.10 9.93 16 7 O -0.56 -10.38 14.50 5.28 0.08 -10.30 16 8 N -0.71 -11.70 4.26 -54.84 -0.23 -11.93 16 9 C 0.16 2.74 2.78 -67.89 -0.19 2.55 16 10 H 0.07 1.26 7.57 -51.93 -0.39 0.86 16 11 C -0.15 -3.05 5.77 -26.61 -0.15 -3.21 16 12 C 0.18 4.16 5.03 -3.71 -0.02 4.15 16 13 N -0.59 -13.91 2.99 -164.77 -0.49 -14.40 16 14 C -0.25 -6.60 8.58 -15.06 -0.13 -6.73 16 15 H 0.07 1.73 6.23 -52.48 -0.33 1.41 16 16 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 17 N -0.90 -25.86 11.23 55.49 0.62 -25.24 16 18 Si 0.90 21.54 29.58 -169.99 -5.03 16.51 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.17 3.27 3.20 -67.61 -0.22 3.05 16 23 H 0.02 0.37 6.64 -51.93 -0.34 0.03 16 24 C -0.14 -2.46 7.95 37.15 0.30 -2.16 16 25 C -0.14 -2.31 5.07 -26.61 -0.13 -2.45 16 26 C 0.09 1.23 11.50 -16.98 -0.20 1.04 16 27 N -0.30 -4.30 12.50 30.86 0.39 -3.92 16 28 N -0.37 -4.43 3.98 -63.33 -0.25 -4.68 16 29 C 0.10 0.70 11.24 59.85 0.67 1.37 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.49 6.49 -51.93 -0.34 1.15 16 36 H 0.07 0.59 7.05 -51.93 -0.37 0.22 16 37 H 0.40 6.28 5.82 -40.82 -0.24 6.04 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 41 H 0.08 2.23 6.15 -51.93 -0.32 1.91 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.21 7.67 -51.93 -0.40 0.81 16 45 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.19 2.30 7.50 -52.48 -0.39 1.90 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 0.45 7.02 -51.93 -0.36 0.08 16 51 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -31.97 396.61 -8.75 -40.72 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.48 Total: 6.06 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.33 Total: 1.20 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.03 Total: -60.17 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.97 -8.75 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947492279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.223 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds