Wall clock time and date at job start Tue Mar 31 2020 19:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 C 1.50699 * 109.46820 * 179.97438 * 3 2 1 5 5 C 1.38047 * 126.29378 * 269.99667 * 4 3 2 6 6 C 1.47431 * 126.41099 * 0.02744 * 5 4 3 7 7 O 1.21598 * 120.00089 * 359.71617 * 6 5 4 8 8 N 1.34779 * 119.99814 * 179.70802 * 6 5 4 9 9 C 1.46498 * 119.99875 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.45152 * 34.96276 * 9 8 6 11 11 C 1.53046 * 109.45913 * 274.99974 * 9 8 6 12 12 C 1.53188 * 109.31092 * 301.34663 * 11 9 8 13 13 N 1.46931 * 108.77869 * 305.36514 * 12 11 9 14 14 C 1.36932 * 120.62871 * 233.63324 * 13 12 11 15 15 H 1.08005 * 119.99978 * 150.15161 * 14 13 12 16 16 C 1.38813 * 120.00560 * 330.15180 * 14 13 12 17 17 N 1.31625 * 119.99447 * 344.50127 * 16 14 13 18 18 Si 1.86792 * 120.00223 * 164.49497 * 16 14 13 19 19 H 1.48498 * 109.47190 * 60.00614 * 18 16 14 20 20 H 1.48508 * 109.47035 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47394 * 300.00011 * 18 16 14 22 22 C 1.46923 * 118.73813 * 53.60423 * 13 12 11 23 23 H 1.09007 * 109.58667 * 66.18406 * 22 13 12 24 24 C 1.52995 * 109.58613 * 186.60624 * 22 13 12 25 25 C 1.53044 * 109.45887 * 154.93369 * 9 8 6 26 26 C 1.41285 * 107.17171 * 179.76485 * 5 4 3 27 27 N 1.30449 * 108.02326 * 0.24202 * 26 5 4 28 28 N 1.34257 * 126.29402 * 90.18475 * 4 3 2 29 29 C 1.46508 * 125.75268 * 359.97438 * 28 4 3 30 30 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47094 * 300.00325 * 1 2 3 32 32 H 1.09005 * 109.46946 * 59.99629 * 1 2 3 33 33 H 1.08997 * 109.46988 * 239.99722 * 2 1 3 34 34 H 1.08996 * 109.46928 * 120.00271 * 2 1 3 35 35 H 1.08998 * 109.47083 * 60.00413 * 3 2 1 36 36 H 1.08996 * 109.47394 * 299.99986 * 3 2 1 37 37 H 0.97001 * 119.99734 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.49811 * 181.39419 * 11 9 8 39 39 H 1.08999 * 109.49603 * 61.29542 * 11 9 8 40 40 H 1.09006 * 109.59224 * 65.15135 * 12 11 9 41 41 H 1.09004 * 109.58959 * 185.57515 * 12 11 9 42 42 H 0.96997 * 119.99477 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.47341 * 179.29388 * 24 22 13 44 44 H 1.09001 * 109.47548 * 299.29008 * 24 22 13 45 45 H 1.09005 * 109.47137 * 59.29660 * 24 22 13 46 46 H 1.09003 * 109.49328 * 178.60599 * 25 9 8 47 47 H 1.08998 * 109.49532 * 298.66426 * 25 9 8 48 48 H 1.08006 * 125.98753 * 180.20939 * 26 5 4 49 49 H 1.09001 * 109.46943 * 270.26940 * 29 28 4 50 50 H 1.09003 * 109.46794 * 30.26715 * 29 28 4 51 51 H 1.08997 * 109.46917 * 150.26474 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3637 1.4426 1.1136 6 6 3.9248 1.4423 2.5211 7 8 2.7385 1.4471 2.7881 8 7 4.8385 1.4366 3.5119 9 6 4.4024 1.4358 4.9104 10 1 3.4878 0.8505 5.0051 11 6 4.1366 2.8736 5.3625 12 6 5.4146 3.7015 5.1954 13 7 6.5077 3.0347 5.9161 14 6 7.2496 3.7161 6.8437 15 1 7.6850 3.1891 7.6798 16 6 7.4421 5.0843 6.7094 17 7 7.1859 5.6754 5.5616 18 14 8.0646 6.0864 8.1577 19 1 9.3947 5.5766 8.5772 20 1 8.1838 7.5119 7.7585 21 1 7.1097 5.9678 9.2887 22 6 6.7892 1.6228 5.6230 23 1 7.1530 1.5275 4.5998 24 6 7.8457 1.0976 6.5970 25 6 5.4959 0.8181 5.7851 26 6 5.6988 1.4368 0.6514 27 7 5.6743 1.4387 -0.6529 28 7 4.3422 1.4457 -1.0811 29 6 3.8912 1.4494 -2.4751 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 5.7848 1.4330 3.2989 38 1 3.8359 2.8759 6.4102 39 1 3.3416 3.3050 4.7543 40 1 5.6663 3.7758 4.1375 41 1 5.2603 4.6989 5.6073 42 1 7.3200 6.6314 5.4679 43 1 8.0440 0.0467 6.3860 44 1 8.7651 1.6713 6.4800 45 1 7.4808 1.2003 7.6190 46 1 5.1823 0.8398 6.8288 47 1 5.6677 -0.2136 5.4783 48 1 6.5844 1.4323 1.2696 49 1 3.7750 0.4227 -2.8221 50 1 2.9347 1.9674 -2.5460 51 1 4.6282 1.9611 -3.0940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947492279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:38 Heat of formation + Delta-G solvation = 26.331522 kcal Electronic energy + Delta-G solvation = -30261.417497 eV Core-core repulsion = 26389.657340 eV Total energy + Delta-G solvation = -3871.760157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.52522 -40.73007 -38.93690 -36.31095 -35.68019 -34.32726 -33.97568 -32.76526 -31.72658 -31.15631 -28.31865 -27.73443 -27.41507 -26.72887 -24.10055 -23.56549 -22.67210 -22.29319 -21.70581 -20.56790 -20.08188 -18.63812 -18.17289 -17.08997 -16.88995 -16.70861 -16.45974 -15.96667 -15.82042 -15.60123 -15.50777 -15.43765 -14.97670 -14.66664 -14.46870 -14.30714 -14.13014 -13.91071 -13.56952 -13.48020 -13.29907 -13.16659 -13.02397 -12.79550 -12.62210 -12.46806 -12.42486 -12.27082 -12.17151 -12.14655 -11.95026 -11.91764 -11.66148 -11.53618 -11.35080 -10.94180 -10.75154 -10.46839 -10.39119 -9.98044 -9.54257 -8.54553 -7.79146 -5.24719 0.51381 1.14081 1.41786 1.48242 1.50834 1.56273 2.41654 2.54746 2.56410 3.35968 3.46900 3.51335 3.67122 3.89709 3.96323 4.09530 4.12125 4.16014 4.21544 4.26974 4.34442 4.41564 4.49439 4.52119 4.62448 4.64005 4.66553 4.72888 4.81904 4.84093 4.92055 4.96685 4.98934 5.03048 5.12225 5.17179 5.19477 5.24267 5.34699 5.38227 5.43678 5.46186 5.57616 5.59843 5.71744 5.76876 5.81829 5.90729 6.47819 6.49408 6.74481 7.22961 7.41139 7.95895 8.47668 9.26638 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.003051 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.073696 B = 9174.933989 C = 9590.515682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.060 4.060 4 C 0.160 3.840 5 C -0.320 4.320 6 C 0.593 3.407 7 O -0.579 6.579 8 N -0.707 5.707 9 C 0.164 3.836 10 H 0.079 0.921 11 C -0.140 4.140 12 C 0.190 3.810 13 N -0.601 5.601 14 C -0.247 4.247 15 H 0.075 0.925 16 C -0.053 4.053 17 N -0.936 5.936 18 Si 0.958 3.042 19 H -0.275 1.275 20 H -0.301 1.301 21 H -0.281 1.281 22 C 0.161 3.839 23 H 0.023 0.977 24 C -0.130 4.130 25 C -0.125 4.125 26 C 0.081 3.919 27 N -0.321 5.321 28 N -0.359 5.359 29 C 0.083 3.917 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.402 0.598 38 H 0.061 0.939 39 H 0.045 0.955 40 H -0.003 1.003 41 H 0.042 0.958 42 H 0.244 0.756 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.199 0.801 49 H 0.098 0.902 50 H 0.114 0.886 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 -13.648 -14.535 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.099 4.099 4 C 0.026 3.974 5 C -0.334 4.334 6 C 0.382 3.618 7 O -0.461 6.461 8 N -0.358 5.358 9 C 0.059 3.941 10 H 0.097 0.903 11 C -0.181 4.181 12 C 0.065 3.935 13 N -0.325 5.325 14 C -0.378 4.378 15 H 0.093 0.907 16 C -0.248 4.248 17 N -0.582 5.582 18 Si 0.787 3.213 19 H -0.201 1.201 20 H -0.227 1.227 21 H -0.207 1.207 22 C 0.055 3.945 23 H 0.041 0.959 24 C -0.188 4.188 25 C -0.164 4.164 26 C -0.106 4.106 27 N -0.141 5.141 28 N -0.138 5.138 29 C -0.056 4.056 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.238 0.762 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.216 0.784 49 H 0.116 0.884 50 H 0.133 0.867 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.838 -13.493 -15.611 22.859 hybrid contribution 0.660 1.340 1.430 2.068 sum -9.178 -12.153 -14.181 20.809 Atomic orbital electron populations 1.21716 0.93814 1.02428 1.02347 1.21310 0.97184 0.93986 1.01729 1.20582 0.84316 0.99921 1.05110 1.21798 0.95464 0.94000 0.86145 1.20113 0.93678 1.26135 0.93514 1.17409 0.85224 0.74877 0.84327 1.90660 1.17359 1.53289 1.84804 1.45840 1.09790 1.74427 1.05708 1.20723 0.97879 0.95488 0.79976 0.90308 1.22365 0.98379 0.97033 1.00279 1.20347 0.85430 0.94708 0.93063 1.44340 1.34604 1.07463 1.46082 1.19455 1.25974 0.90792 1.01555 0.90731 1.25778 1.01327 0.99492 0.98203 1.70183 1.54661 1.09341 1.24043 0.85479 0.78562 0.77393 0.79839 1.20051 1.22739 1.20746 1.20643 0.93584 0.84037 0.96247 0.95943 1.21739 0.98020 1.00030 0.98979 1.22234 0.95141 0.99265 0.99794 1.24253 0.97634 0.96514 0.92164 1.77120 0.97396 1.26248 1.13295 1.48688 1.03238 1.54214 1.07636 1.22395 1.02608 1.05491 0.75076 0.91785 0.93452 0.90917 0.90986 0.93724 0.89412 0.87795 0.76197 0.92005 0.93672 0.98482 0.93912 0.94655 0.90533 0.94137 0.93176 0.90624 0.89333 0.78411 0.88403 0.86728 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.10 -1.84 5.92 30.59 0.18 -1.66 16 3 C -0.06 -1.22 4.91 29.85 0.15 -1.07 16 4 C 0.16 4.03 6.26 42.14 0.26 4.29 16 5 C -0.32 -9.65 6.13 -20.15 -0.12 -9.77 16 6 C 0.59 20.19 7.78 86.66 0.67 20.86 16 7 O -0.58 -21.93 14.50 -4.03 -0.06 -21.99 16 8 N -0.71 -23.22 4.26 -445.66 -1.90 -25.12 16 9 C 0.16 5.58 2.78 45.02 0.13 5.70 16 10 H 0.08 2.65 7.57 -2.39 -0.02 2.63 16 11 C -0.14 -5.69 5.77 30.67 0.18 -5.51 16 12 C 0.19 9.30 5.03 86.36 0.43 9.73 16 13 N -0.60 -28.73 2.99 -675.23 -2.02 -30.74 16 14 C -0.25 -13.07 8.58 84.03 0.72 -12.35 16 15 H 0.08 3.79 6.23 -2.91 -0.02 3.77 16 16 C -0.05 -2.94 4.94 84.86 0.42 -2.53 16 17 N -0.94 -55.73 11.23 21.65 0.24 -55.49 16 18 Si 0.96 45.09 29.58 68.60 2.03 47.12 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 C 0.16 6.00 3.20 44.97 0.14 6.14 16 23 H 0.02 0.85 6.64 -2.38 -0.02 0.84 16 24 C -0.13 -4.40 7.95 71.98 0.57 -3.83 16 25 C -0.13 -3.88 5.07 30.67 0.16 -3.72 16 26 C 0.08 2.31 11.50 85.65 0.99 3.29 16 27 N -0.32 -8.92 12.50 -56.27 -0.70 -9.62 16 28 N -0.36 -8.05 3.98 -354.29 -1.41 -9.46 16 29 C 0.08 0.94 11.24 127.77 1.44 2.38 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 2.30 6.49 -2.39 -0.02 2.28 16 36 H 0.10 1.38 7.05 -2.39 -0.02 1.36 16 37 H 0.40 12.58 5.82 -92.71 -0.54 12.04 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.00 -0.15 7.74 -2.38 -0.02 -0.17 16 41 H 0.04 2.42 6.15 -2.39 -0.01 2.40 16 42 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.04 1.52 7.67 -2.39 -0.02 1.51 16 45 H 0.05 1.73 7.40 -2.38 -0.02 1.71 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.20 4.87 7.50 -2.91 -0.02 4.85 16 49 H 0.10 0.74 8.14 -2.39 -0.02 0.73 16 50 H 0.11 0.70 7.02 -2.39 -0.02 0.69 16 51 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -71.59 396.61 3.60 -67.99 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.39 Total: 26.75 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 7.02 Total: 10.56 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -5.78 Total: -130.43 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.59 3.60 -67.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947492279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.325 kcal (2) G-P(sol) polarization free energy of solvation -71.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds