Wall clock time and date at job start Tue Mar 31 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.46931 * 2 1 4 4 C 1.34673 * 126.58929 * 275.03702 * 3 2 1 5 5 N 1.34132 * 108.01741 * 179.74752 * 4 3 2 6 6 C 1.30500 * 109.25921 * 0.37429 * 5 4 3 7 7 C 1.50697 * 125.64890 * 179.88885 * 6 5 4 8 8 C 1.50692 * 109.47406 * 304.69587 * 7 6 5 9 9 O 1.21281 * 120.00095 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99914 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99837 * 0.02562 * 10 8 7 12 12 C 1.46502 * 119.99913 * 179.97438 * 10 8 7 13 13 H 1.09005 * 108.44640 * 2.30645 * 12 10 8 14 14 C 1.52570 * 108.51056 * 244.76452 * 12 10 8 15 15 C 1.50889 * 109.35665 * 153.73465 * 14 12 10 16 16 C 1.53943 * 110.09289 * 91.88546 * 15 14 12 17 17 N 1.47607 * 112.14232 * 319.43616 * 16 15 14 18 18 C 1.36937 * 118.64055 * 137.85160 * 17 16 15 19 19 H 1.08005 * 119.99537 * 207.18703 * 18 17 16 20 20 C 1.38807 * 120.00255 * 27.17988 * 18 17 16 21 21 N 1.31621 * 120.00313 * 16.73979 * 20 18 17 22 22 Si 1.86803 * 119.99942 * 196.73720 * 20 18 17 23 23 H 1.48500 * 109.47051 * 93.99642 * 22 20 18 24 24 H 1.48501 * 109.47328 * 213.99873 * 22 20 18 25 25 H 1.48506 * 109.47026 * 333.99699 * 22 20 18 26 26 C 1.44575 * 122.71372 * 317.86444 * 17 16 15 27 27 C 1.47090 * 108.51313 * 120.00012 * 12 10 8 28 28 N 1.35041 * 108.69638 * 359.62848 * 6 5 4 29 29 H 0.97003 * 126.39845 * 180.21169 * 28 6 5 30 30 H 1.09002 * 109.46730 * 300.00403 * 1 2 3 31 31 H 1.09001 * 109.47087 * 59.99488 * 1 2 3 32 32 H 1.08998 * 109.46967 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46398 * 239.99972 * 2 1 3 34 34 H 1.08994 * 109.46816 * 120.00250 * 2 1 3 35 35 H 1.08004 * 125.99128 * 0.02562 * 4 3 2 36 36 H 1.09004 * 109.46855 * 184.68671 * 7 6 5 37 37 H 1.09000 * 109.46889 * 64.69802 * 7 6 5 38 38 H 1.09006 * 109.46824 * 269.99654 * 11 10 8 39 39 H 1.09001 * 109.47131 * 150.00156 * 11 10 8 40 40 H 1.08998 * 109.47722 * 29.99459 * 11 10 8 41 41 H 1.09001 * 109.49467 * 273.70032 * 14 12 10 42 42 H 1.08996 * 109.49095 * 33.77316 * 14 12 10 43 43 H 1.08996 * 109.36223 * 331.69441 * 15 14 12 44 44 H 1.09001 * 109.36464 * 212.07799 * 15 14 12 45 45 H 1.09003 * 108.94644 * 198.75039 * 16 15 14 46 46 H 1.09000 * 108.95031 * 80.12185 * 16 15 14 47 47 H 0.97002 * 120.00042 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.45277 * 330.69406 * 26 17 16 49 49 H 1.08993 * 109.45198 * 210.77087 * 26 17 16 50 50 H 1.08997 * 109.32673 * 304.31913 * 27 12 10 51 51 H 1.09006 * 109.32819 * 63.96693 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2104 2.2093 -1.0772 5 7 2.6642 3.3974 -0.6511 6 6 2.7818 3.3725 0.6483 7 6 3.2635 4.5121 1.5087 8 6 4.6180 4.9660 1.0289 9 8 5.1410 4.4178 0.0820 10 7 5.2487 5.9806 1.6529 11 6 4.6177 6.6418 2.7979 12 6 6.5658 6.4215 1.1869 13 1 6.8356 5.8339 0.3093 14 6 7.5868 6.1424 2.2857 15 6 8.9511 5.9627 1.6667 16 6 9.6942 7.3102 1.6242 17 7 8.8032 8.4253 1.2484 18 6 8.9143 9.6109 1.9246 19 1 8.0599 10.2660 2.0098 20 6 10.1249 9.9705 2.5008 21 7 11.2340 9.3636 2.1348 22 14 10.1800 11.3159 3.7955 23 1 10.0987 10.7059 5.1470 24 1 11.4516 12.0724 3.6695 25 1 9.0333 12.2390 3.5992 26 6 7.8178 8.3175 0.1959 27 6 6.4722 7.8353 0.7917 28 7 2.3947 2.1582 1.0948 29 1 2.3770 1.8634 2.0188 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0169 1.9347 -2.1036 36 1 3.3373 4.1796 2.5441 37 1 2.5582 5.3405 1.4425 38 1 4.0110 7.4764 2.4464 39 1 5.3885 7.0122 3.4737 40 1 3.9840 5.9288 3.3253 41 1 7.6108 6.9810 2.9816 42 1 7.3073 5.2342 2.8197 43 1 8.8401 5.5789 0.6526 44 1 9.5261 5.2513 2.2595 45 1 10.5047 7.2447 0.8983 46 1 10.1180 7.5119 2.6080 47 1 12.0800 9.6152 2.5371 48 1 8.1613 7.6017 -0.5510 49 1 7.6790 9.2917 -0.2725 50 1 5.6856 7.9501 0.0460 51 1 6.2308 8.4392 1.6665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948448655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:47 Heat of formation + Delta-G solvation = 41.749251 kcal Electronic energy + Delta-G solvation = -29510.864206 eV Core-core repulsion = 25639.772611 eV Total energy + Delta-G solvation = -3871.091594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -42.27293 -39.98002 -37.64828 -35.28678 -34.47349 -33.08384 -32.53863 -31.69253 -31.35645 -30.03901 -27.30203 -26.81591 -25.87212 -24.15841 -23.64063 -23.14268 -21.32544 -20.98299 -19.79029 -19.22307 -18.86878 -17.62879 -16.92460 -16.66446 -15.88187 -15.55695 -15.20654 -14.94662 -14.80414 -14.44806 -14.00881 -13.88249 -13.74161 -13.55113 -13.32504 -13.18834 -12.95843 -12.79150 -12.66907 -12.43615 -12.30619 -12.09526 -11.94631 -11.87363 -11.57747 -11.32706 -11.20298 -10.83770 -10.56578 -10.42068 -10.14278 -10.12876 -10.08819 -9.92554 -9.78801 -9.72575 -9.55644 -9.46540 -8.41529 -8.36984 -8.33064 -6.62767 -5.75686 -3.19576 1.81996 2.72426 2.80765 3.03644 3.35279 3.37498 3.44663 3.45915 4.15761 4.48148 4.51417 4.58934 4.64759 4.71967 4.90101 5.11548 5.14386 5.20771 5.26420 5.28670 5.37109 5.39809 5.44664 5.46129 5.55163 5.62647 5.70092 5.74796 5.76567 5.83606 6.06718 6.08635 6.10492 6.27117 6.38612 6.52171 6.58621 6.64246 6.71262 6.81035 6.87274 6.89109 6.99195 7.04285 7.17834 7.46394 7.61949 7.73535 7.85092 8.04302 8.38607 8.50008 9.26782 9.93974 10.40171 11.31585 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.002233 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.998526 B =12533.704327 C =12748.960827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.027 4.027 4 C -0.020 4.020 5 N -0.457 5.457 6 C 0.221 3.779 7 C -0.054 4.054 8 C 0.514 3.486 9 O -0.518 6.518 10 N -0.613 5.613 11 C 0.076 3.924 12 C 0.157 3.843 13 H 0.087 0.913 14 C -0.108 4.108 15 C -0.141 4.141 16 C 0.179 3.821 17 N -0.589 5.589 18 C -0.257 4.257 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.162 3.838 27 C -0.152 4.152 28 N -0.564 5.564 29 H 0.414 0.586 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.167 0.833 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.025 0.975 46 H 0.071 0.929 47 H 0.253 0.747 48 H 0.034 0.966 49 H 0.050 0.950 50 H 0.051 0.949 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.572 -16.211 2.139 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.169 4.169 5 N -0.175 5.175 6 C -0.043 4.043 7 C -0.095 4.095 8 C 0.300 3.700 9 O -0.393 6.393 10 N -0.347 5.347 11 C -0.068 4.068 12 C 0.055 3.945 13 H 0.105 0.895 14 C -0.146 4.146 15 C -0.181 4.181 16 C 0.054 3.946 17 N -0.310 5.310 18 C -0.387 4.387 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.729 3.271 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.204 1.204 26 C 0.033 3.967 27 C -0.193 4.193 28 N -0.168 5.168 29 H 0.252 0.748 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.052 0.948 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.908 -15.795 1.095 25.437 hybrid contribution -0.148 -0.078 1.865 1.873 sum -20.056 -15.873 2.960 25.748 Atomic orbital electron populations 1.21779 0.94496 1.01824 1.02398 1.19967 0.95937 0.89173 1.03384 1.21200 1.09355 0.96345 0.87330 1.22115 1.05784 0.90425 0.98577 1.70257 1.16347 1.23062 1.07806 1.22286 1.04030 0.86783 0.91180 1.19994 0.96608 0.95206 0.97720 1.20030 0.86290 0.80312 0.83416 1.90752 1.66538 1.55048 1.26947 1.48279 1.20242 1.34165 1.32054 1.21759 0.98724 0.97487 0.88797 1.20144 0.80000 0.96461 0.97848 0.89483 1.21266 0.94700 1.00716 0.97961 1.21982 0.96080 1.00507 0.99491 1.20989 0.90083 0.82816 1.00731 1.43662 1.40026 1.10028 1.37326 1.19193 0.94214 0.97203 1.28090 0.91760 1.25042 0.95161 0.98353 1.00876 1.70086 0.97347 1.44343 1.42830 0.86335 0.77034 0.81668 0.82079 1.21604 1.21867 1.20438 1.20575 0.87624 0.98376 0.90134 1.21840 1.01123 0.95094 1.01285 1.43076 1.51684 1.12449 1.09558 0.74843 0.92970 0.92016 0.92103 0.89435 0.91385 0.81582 0.87882 0.86530 0.92528 0.90305 0.91898 0.90502 0.93674 0.93379 0.92807 0.95699 0.91059 0.93734 0.94779 0.93202 0.93077 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.90 37.16 0.37 -0.41 16 2 C -0.05 -0.29 6.49 -27.88 -0.18 -0.47 16 3 C -0.03 -0.26 6.49 -81.60 -0.53 -0.79 16 4 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 5 N -0.46 -7.04 10.60 -10.81 -0.11 -7.15 16 6 C 0.22 2.76 6.95 -155.42 -1.08 1.68 16 7 C -0.05 -0.55 4.88 -29.04 -0.14 -0.69 16 8 C 0.51 7.69 7.66 -10.99 -0.08 7.60 16 9 O -0.52 -10.18 14.86 5.56 0.08 -10.10 16 10 N -0.61 -8.72 2.59 -177.48 -0.46 -9.18 16 11 C 0.08 0.79 9.21 59.85 0.55 1.34 16 12 C 0.16 2.70 1.96 -70.99 -0.14 2.56 16 13 H 0.09 1.72 6.03 -51.93 -0.31 1.41 16 14 C -0.11 -1.91 4.34 -28.01 -0.12 -2.03 16 15 C -0.14 -2.73 5.71 -27.30 -0.16 -2.89 16 16 C 0.18 4.23 4.67 -2.94 -0.01 4.22 16 17 N -0.59 -14.28 2.27 -172.09 -0.39 -14.67 16 18 C -0.26 -6.82 9.42 -15.06 -0.14 -6.96 16 19 H 0.06 1.68 7.88 -52.48 -0.41 1.27 16 20 C 0.00 0.12 4.83 -17.43 -0.08 0.04 16 21 N -0.90 -25.89 11.13 55.49 0.62 -25.27 16 22 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.16 3.41 5.65 -4.09 -0.02 3.39 16 27 C -0.15 -2.73 4.88 -28.59 -0.14 -2.87 16 28 N -0.56 -5.31 6.15 -6.54 -0.04 -5.35 16 29 H 0.41 2.43 8.96 -40.82 -0.37 2.07 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.10 0.68 7.40 -51.93 -0.38 0.30 16 37 H 0.12 1.00 8.11 -51.93 -0.42 0.58 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.89 7.25 -51.93 -0.38 0.51 16 40 H 0.06 0.44 6.44 -51.93 -0.33 0.11 16 41 H 0.08 1.48 7.23 -51.93 -0.38 1.11 16 42 H 0.04 0.74 8.05 -51.93 -0.42 0.32 16 43 H 0.05 0.93 7.31 -51.93 -0.38 0.55 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.02 0.65 8.03 -51.93 -0.42 0.23 16 46 H 0.07 1.86 6.41 -51.93 -0.33 1.53 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 49 H 0.05 1.06 7.99 -51.93 -0.41 0.65 16 50 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.06 1.18 7.63 -51.93 -0.40 0.78 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -34.73 397.63 -10.17 -44.90 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.70 Total: 1.25 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.13 Total: 3.26 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.39 Total: -61.61 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.73 -10.17 -44.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948448655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.653 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds