Wall clock time and date at job start Tue Mar 31 2020 19:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.50696 * 109.47178 * 180.02562 * 3 2 1 5 5 C 1.35370 * 126.38961 * 84.99686 * 4 3 2 6 6 C 1.41501 * 105.50378 * 179.97438 * 5 4 3 7 7 C 1.47715 * 126.51615 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99913 * 6.28962 * 7 6 5 9 9 N 1.34775 * 119.99789 * 186.28452 * 7 6 5 10 10 C 1.46499 * 120.00249 * 5.29688 * 9 7 6 11 11 C 1.46504 * 119.99730 * 185.29874 * 9 7 6 12 12 H 1.08997 * 110.21356 * 1.93187 * 11 9 7 13 13 C 1.50123 * 110.24899 * 124.01778 * 11 9 7 14 14 C 1.54845 * 110.81765 * 216.65349 * 13 11 9 15 15 C 1.54416 * 110.06780 * 321.07660 * 14 13 11 16 16 N 1.43435 * 116.38938 * 318.64968 * 15 14 13 17 17 C 1.36930 * 120.53722 * 271.72664 * 16 15 14 18 18 H 1.08006 * 120.00090 * 336.66666 * 17 16 15 19 19 C 1.38808 * 120.00228 * 156.66011 * 17 16 15 20 20 N 1.31629 * 119.99866 * 340.75252 * 19 17 16 21 21 Si 1.86803 * 120.00353 * 160.74762 * 19 17 16 22 22 H 1.48501 * 109.46577 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.47223 * 120.00205 * 21 19 17 24 24 H 1.48497 * 109.47183 * 240.00557 * 21 19 17 25 25 C 1.50164 * 118.92322 * 91.45886 * 16 15 14 26 26 C 1.46245 * 107.53202 * 289.83779 * 25 16 15 27 27 N 1.31803 * 106.96632 * 0.27014 * 6 5 4 28 28 N 1.28476 * 110.06976 * 359.54641 * 27 6 5 29 29 H 0.97001 * 124.88125 * 180.20335 * 28 27 6 30 30 H 1.08999 * 109.46788 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46759 * 299.99879 * 1 2 3 32 32 H 1.08994 * 109.47119 * 60.00073 * 1 2 3 33 33 H 1.09005 * 109.47222 * 240.00079 * 2 1 3 34 34 H 1.09004 * 109.47558 * 119.99609 * 2 1 3 35 35 H 1.08993 * 109.47606 * 59.99890 * 3 2 1 36 36 H 1.09001 * 109.46692 * 299.99746 * 3 2 1 37 37 H 1.08002 * 127.24525 * 359.97438 * 5 4 3 38 38 H 1.08998 * 109.46748 * 275.46833 * 10 9 7 39 39 H 1.09000 * 109.46939 * 35.46705 * 10 9 7 40 40 H 1.09002 * 109.46768 * 155.46980 * 10 9 7 41 41 H 1.08991 * 109.21247 * 336.99945 * 13 11 9 42 42 H 1.09006 * 109.20828 * 96.36030 * 13 11 9 43 43 H 1.08999 * 109.36037 * 81.33887 * 14 13 11 44 44 H 1.08994 * 109.36211 * 201.06522 * 14 13 11 45 45 H 1.08996 * 107.88740 * 196.93242 * 15 14 13 46 46 H 1.09001 * 108.10131 * 80.53523 * 15 14 13 47 47 H 0.96996 * 119.99476 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.85115 * 49.34254 * 25 16 15 49 49 H 1.09003 * 109.84602 * 170.26701 * 25 16 15 50 50 H 1.08996 * 108.52041 * 179.65613 * 26 25 16 51 51 H 1.09002 * 108.51898 * 297.16859 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3497 1.3476 -1.0866 6 6 5.6719 1.3921 -0.5846 7 6 6.9160 1.3225 -1.3779 8 8 6.8638 1.3313 -2.5925 9 7 8.1090 1.2494 -0.7552 10 6 8.1676 1.1218 0.7031 11 6 9.3473 1.2975 -1.5366 12 1 9.1201 1.4276 -2.5947 13 6 10.2260 2.4131 -1.0498 14 6 10.9686 3.0843 -2.2312 15 6 11.4117 2.0158 -3.2541 16 7 11.9399 0.7965 -2.7141 17 6 13.2752 0.6807 -2.4335 18 1 13.9899 1.3145 -2.9376 19 6 13.7103 -0.2510 -1.5011 20 7 12.8644 -0.7484 -0.6237 21 14 15.4960 -0.7990 -1.4915 22 1 16.2354 -0.0958 -2.5704 23 1 16.1073 -0.4715 -0.1784 24 1 15.5651 -2.2650 -1.7178 25 6 11.0038 -0.3489 -2.4557 26 6 10.1559 0.0219 -1.3234 27 7 5.5824 1.5010 0.7258 28 7 4.3485 1.5377 1.0819 29 1 4.0374 1.6180 1.9972 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6768 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 4.0449 1.2570 -2.1187 38 1 8.1006 2.1105 1.1572 39 1 7.3364 0.5066 1.0476 40 1 9.1094 0.6536 0.9892 41 1 9.6125 3.1575 -0.5425 42 1 10.9578 2.0130 -0.3479 43 1 10.3036 3.7982 -2.7172 44 1 11.8475 3.6076 -1.8549 45 1 12.1726 2.4612 -3.8950 46 1 10.5530 1.7673 -3.8777 47 1 13.1685 -1.3997 0.0275 48 1 10.3872 -0.5288 -3.3364 49 1 11.5743 -1.2457 -2.2140 50 1 9.4647 -0.7973 -1.1255 51 1 10.7889 0.1558 -0.4461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948666049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:58 Heat of formation + Delta-G solvation = 66.011340 kcal Electronic energy + Delta-G solvation = -29845.729835 eV Core-core repulsion = 25975.690324 eV Total energy + Delta-G solvation = -3870.039511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.80332 -39.58412 -37.50453 -35.73603 -35.07350 -32.86049 -31.94479 -31.28866 -30.83724 -30.37060 -26.91796 -26.51238 -26.13009 -24.67140 -23.02088 -22.84016 -22.29892 -21.15101 -19.79405 -19.18139 -18.37458 -17.90507 -16.64692 -16.42144 -15.91737 -15.69014 -15.46893 -14.92841 -14.54789 -14.17039 -13.95421 -13.82344 -13.71923 -13.57151 -13.46374 -13.09680 -12.71507 -12.65006 -12.61708 -12.07171 -11.93103 -11.84558 -11.71929 -11.63822 -11.27813 -11.17525 -11.15511 -10.74681 -10.71213 -10.60079 -10.21073 -10.07741 -9.88966 -9.75099 -9.55717 -9.42533 -9.36076 -9.19973 -9.07996 -8.44641 -8.04360 -6.65748 -5.74113 -3.12555 1.59721 2.01509 2.70019 3.39577 3.40680 3.49179 3.51383 3.62371 4.23857 4.39446 4.52040 4.55545 4.60785 4.87800 5.01316 5.19895 5.26324 5.34972 5.40433 5.47001 5.49577 5.58930 5.62534 5.64805 5.72358 5.82060 5.83243 5.87119 5.92189 5.96330 6.15902 6.28437 6.31556 6.38461 6.41194 6.61101 6.66964 6.72299 6.84620 6.96665 6.98833 7.03866 7.15895 7.22056 7.34419 7.59724 7.74789 7.78898 7.88272 8.01019 8.48109 8.52880 9.24553 9.92568 10.46335 11.33250 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025481 B = 0.002439 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.612820 B =11477.334784 C =11756.046084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.049 4.049 4 C 0.012 3.988 5 C -0.176 4.176 6 C 0.000 4.000 7 C 0.593 3.407 8 O -0.539 6.539 9 N -0.588 5.588 10 C 0.085 3.915 11 C 0.142 3.858 12 H 0.098 0.902 13 C -0.112 4.112 14 C -0.140 4.140 15 C 0.154 3.846 16 N -0.588 5.588 17 C -0.241 4.241 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.902 5.902 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.291 1.291 25 C 0.168 3.832 26 C -0.133 4.133 27 N -0.253 5.253 28 N -0.386 5.386 29 H 0.441 0.559 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.251 0.749 48 H 0.008 0.992 49 H 0.093 0.907 50 H 0.030 0.970 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.044 3.748 5.799 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.088 4.088 4 C -0.114 4.114 5 C -0.204 4.204 6 C -0.161 4.161 7 C 0.379 3.621 8 O -0.415 6.415 9 N -0.319 5.319 10 C -0.058 4.058 11 C 0.040 3.960 12 H 0.115 0.885 13 C -0.150 4.150 14 C -0.181 4.181 15 C 0.025 3.975 16 N -0.309 5.309 17 C -0.371 4.371 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.218 1.218 25 C 0.044 3.956 26 C -0.172 4.172 27 N -0.089 5.089 28 N -0.100 5.100 29 H 0.285 0.715 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.178 0.822 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.026 0.974 49 H 0.111 0.889 50 H 0.049 0.951 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.296 3.692 6.169 23.427 hybrid contribution 0.272 -0.224 0.295 0.460 sum -22.024 3.468 6.464 23.213 Atomic orbital electron populations 1.21779 0.95260 1.02040 1.01953 1.21552 0.95950 0.95527 1.02956 1.20204 0.86428 0.98243 1.03931 1.21391 0.94895 1.07603 0.87468 1.21502 0.90521 1.08647 0.99726 1.22077 0.95381 1.08909 0.89729 1.16993 0.81655 0.77130 0.86340 1.90766 1.86349 1.51509 1.12860 1.47942 1.05659 1.70310 1.08022 1.21849 1.03050 1.01542 0.79356 1.20685 0.81579 0.97710 0.95994 0.88452 1.21748 0.97792 0.96478 0.98997 1.22750 0.98575 0.98853 0.97954 1.20342 0.96181 0.87467 0.93554 1.44282 1.04784 1.07272 1.74594 1.19269 0.82618 1.18678 1.16547 0.91464 1.24883 0.97331 1.01895 0.95754 1.69972 1.33678 1.32943 1.18222 0.86260 0.85239 0.78341 0.77154 1.20476 1.22051 1.21761 1.20122 0.90274 0.92827 0.92378 1.21335 0.97408 0.93824 1.04648 1.73860 1.00675 1.19248 1.15126 1.43441 1.03277 1.53581 1.09711 0.71469 0.92426 0.92727 0.92384 0.91070 0.91984 0.90729 0.89077 0.82207 0.92992 0.90648 0.90628 0.94216 0.90438 0.93685 0.92817 0.94941 0.95173 0.93922 0.97357 0.88855 0.95131 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 3 C -0.05 -0.27 5.77 -27.88 -0.16 -0.43 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.18 -2.20 10.73 -39.36 -0.42 -2.62 16 6 C 0.00 0.00 6.75 -82.77 -0.56 -0.56 16 7 C 0.59 10.99 7.67 -12.39 -0.10 10.89 16 8 O -0.54 -11.48 16.30 5.30 0.09 -11.39 16 9 N -0.59 -10.68 2.64 -177.03 -0.47 -11.15 16 10 C 0.09 1.32 8.48 59.85 0.51 1.83 16 11 C 0.14 2.87 2.29 -69.60 -0.16 2.71 16 12 H 0.10 2.16 5.13 -51.93 -0.27 1.89 16 13 C -0.11 -2.23 4.82 -27.19 -0.13 -2.36 16 14 C -0.14 -2.78 6.40 -25.02 -0.16 -2.94 16 15 C 0.15 3.37 5.13 -4.92 -0.03 3.34 16 16 N -0.59 -14.65 2.61 -175.40 -0.46 -15.11 16 17 C -0.24 -6.51 9.63 -15.06 -0.15 -6.66 16 18 H 0.07 1.82 7.89 -52.48 -0.41 1.40 16 19 C 0.00 -0.03 4.92 -17.43 -0.09 -0.12 16 20 N -0.90 -24.68 9.40 55.49 0.52 -24.16 16 21 Si 0.90 21.55 29.60 -169.99 -5.03 16.52 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.17 4.06 5.25 -5.20 -0.03 4.03 16 26 C -0.13 -2.94 3.85 -30.19 -0.12 -3.05 16 27 N -0.25 -3.25 9.01 33.42 0.30 -2.95 16 28 N -0.39 -3.50 6.83 33.50 0.23 -3.28 16 29 H 0.44 2.32 8.96 -190.43 -1.71 0.61 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 40 H 0.08 1.22 7.14 -51.93 -0.37 0.85 16 41 H 0.04 0.73 7.83 -51.93 -0.41 0.33 16 42 H 0.08 1.74 6.83 -51.93 -0.35 1.39 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 46 H 0.03 0.64 6.90 -51.93 -0.36 0.29 16 47 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 48 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 49 H 0.09 2.48 6.02 -51.93 -0.31 2.16 16 50 H 0.03 0.66 8.02 -51.93 -0.42 0.24 16 51 H 0.10 2.54 5.05 -51.93 -0.26 2.28 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -31.27 391.33 -10.62 -41.90 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -9.80 Total: 1.23 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.90 Total: 2.49 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.13 Total: -56.64 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.27 -10.62 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948666049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.910 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds