Wall clock time and date at job start Tue Mar 31 2020 19:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.50696 * 109.47178 * 180.02562 * 3 2 1 5 5 C 1.35370 * 126.38961 * 84.99686 * 4 3 2 6 6 C 1.41501 * 105.50378 * 179.97438 * 5 4 3 7 7 C 1.47715 * 126.51615 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99913 * 6.28962 * 7 6 5 9 9 N 1.34775 * 119.99789 * 186.28452 * 7 6 5 10 10 C 1.46499 * 120.00249 * 5.29688 * 9 7 6 11 11 C 1.46504 * 119.99730 * 185.29874 * 9 7 6 12 12 H 1.08997 * 110.21356 * 1.93187 * 11 9 7 13 13 C 1.50123 * 110.24899 * 124.01778 * 11 9 7 14 14 C 1.54845 * 110.81765 * 216.65349 * 13 11 9 15 15 C 1.54416 * 110.06780 * 321.07660 * 14 13 11 16 16 N 1.43435 * 116.38938 * 318.64968 * 15 14 13 17 17 C 1.36930 * 120.53722 * 271.72664 * 16 15 14 18 18 H 1.08006 * 120.00090 * 336.66666 * 17 16 15 19 19 C 1.38808 * 120.00228 * 156.66011 * 17 16 15 20 20 N 1.31629 * 119.99866 * 340.75252 * 19 17 16 21 21 Si 1.86803 * 120.00353 * 160.74762 * 19 17 16 22 22 H 1.48501 * 109.46577 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.47223 * 120.00205 * 21 19 17 24 24 H 1.48497 * 109.47183 * 240.00557 * 21 19 17 25 25 C 1.50164 * 118.92322 * 91.45886 * 16 15 14 26 26 C 1.46245 * 107.53202 * 289.83779 * 25 16 15 27 27 N 1.31803 * 106.96632 * 0.27014 * 6 5 4 28 28 N 1.28476 * 110.06976 * 359.54641 * 27 6 5 29 29 H 0.97001 * 124.88125 * 180.20335 * 28 27 6 30 30 H 1.08999 * 109.46788 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46759 * 299.99879 * 1 2 3 32 32 H 1.08994 * 109.47119 * 60.00073 * 1 2 3 33 33 H 1.09005 * 109.47222 * 240.00079 * 2 1 3 34 34 H 1.09004 * 109.47558 * 119.99609 * 2 1 3 35 35 H 1.08993 * 109.47606 * 59.99890 * 3 2 1 36 36 H 1.09001 * 109.46692 * 299.99746 * 3 2 1 37 37 H 1.08002 * 127.24525 * 359.97438 * 5 4 3 38 38 H 1.08998 * 109.46748 * 275.46833 * 10 9 7 39 39 H 1.09000 * 109.46939 * 35.46705 * 10 9 7 40 40 H 1.09002 * 109.46768 * 155.46980 * 10 9 7 41 41 H 1.08991 * 109.21247 * 336.99945 * 13 11 9 42 42 H 1.09006 * 109.20828 * 96.36030 * 13 11 9 43 43 H 1.08999 * 109.36037 * 81.33887 * 14 13 11 44 44 H 1.08994 * 109.36211 * 201.06522 * 14 13 11 45 45 H 1.08996 * 107.88740 * 196.93242 * 15 14 13 46 46 H 1.09001 * 108.10131 * 80.53523 * 15 14 13 47 47 H 0.96996 * 119.99476 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.85115 * 49.34254 * 25 16 15 49 49 H 1.09003 * 109.84602 * 170.26701 * 25 16 15 50 50 H 1.08996 * 108.52041 * 179.65613 * 26 25 16 51 51 H 1.09002 * 108.51898 * 297.16859 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3497 1.3476 -1.0866 6 6 5.6719 1.3921 -0.5846 7 6 6.9160 1.3225 -1.3779 8 8 6.8638 1.3313 -2.5925 9 7 8.1090 1.2494 -0.7552 10 6 8.1676 1.1218 0.7031 11 6 9.3473 1.2975 -1.5366 12 1 9.1201 1.4276 -2.5947 13 6 10.2260 2.4131 -1.0498 14 6 10.9686 3.0843 -2.2312 15 6 11.4117 2.0158 -3.2541 16 7 11.9399 0.7965 -2.7141 17 6 13.2752 0.6807 -2.4335 18 1 13.9899 1.3145 -2.9376 19 6 13.7103 -0.2510 -1.5011 20 7 12.8644 -0.7484 -0.6237 21 14 15.4960 -0.7990 -1.4915 22 1 16.2354 -0.0958 -2.5704 23 1 16.1073 -0.4715 -0.1784 24 1 15.5651 -2.2650 -1.7178 25 6 11.0038 -0.3489 -2.4557 26 6 10.1559 0.0219 -1.3234 27 7 5.5824 1.5010 0.7258 28 7 4.3485 1.5377 1.0819 29 1 4.0374 1.6180 1.9972 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6768 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 4.0449 1.2570 -2.1187 38 1 8.1006 2.1105 1.1572 39 1 7.3364 0.5066 1.0476 40 1 9.1094 0.6536 0.9892 41 1 9.6125 3.1575 -0.5425 42 1 10.9578 2.0130 -0.3479 43 1 10.3036 3.7982 -2.7172 44 1 11.8475 3.6076 -1.8549 45 1 12.1726 2.4612 -3.8950 46 1 10.5530 1.7673 -3.8777 47 1 13.1685 -1.3997 0.0275 48 1 10.3872 -0.5288 -3.3364 49 1 11.5743 -1.2457 -2.2140 50 1 9.4647 -0.7973 -1.1255 51 1 10.7889 0.1558 -0.4461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948666049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:57 Heat of formation + Delta-G solvation = 48.588943 kcal Electronic energy + Delta-G solvation = -29846.485326 eV Core-core repulsion = 25975.690324 eV Total energy + Delta-G solvation = -3870.795003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.72309 -41.11057 -39.19654 -36.75166 -36.20304 -34.59653 -33.28154 -32.60892 -32.27924 -31.73713 -28.18550 -27.81679 -27.34103 -26.22182 -24.92719 -24.27456 -22.85010 -21.90282 -21.60466 -20.64805 -19.88873 -18.81562 -18.58604 -17.65178 -17.18927 -17.00267 -16.79773 -15.94050 -15.88311 -15.73541 -15.49509 -15.34489 -14.87899 -14.80417 -14.63171 -14.30047 -14.11844 -13.95001 -13.57104 -13.51511 -13.36951 -13.14118 -13.02624 -12.90947 -12.63335 -12.54501 -12.42873 -12.11032 -12.03134 -11.82674 -11.74197 -11.69948 -11.63183 -11.50026 -11.19135 -11.05185 -11.03661 -10.46090 -10.42119 -9.92789 -9.56805 -8.66096 -7.79978 -5.21046 0.50898 1.10735 1.48451 1.52243 1.60904 1.80302 2.17001 2.32900 2.56367 3.28971 3.33238 3.59116 3.67070 3.85589 4.00145 4.14320 4.18733 4.21370 4.23325 4.37134 4.47839 4.52661 4.56123 4.60247 4.64274 4.71491 4.75928 4.85035 4.86796 4.91168 4.95308 4.98275 5.00438 5.07260 5.19276 5.22689 5.25083 5.32653 5.34504 5.35150 5.37304 5.49320 5.50303 5.61661 5.70534 5.72000 6.05334 6.13208 6.42228 6.44882 6.83318 7.12788 7.18994 7.91154 8.43864 9.25084 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025481 B = 0.002439 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.612820 B =11477.334784 C =11756.046084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.045 4.045 4 C 0.040 3.960 5 C -0.200 4.200 6 C -0.032 4.032 7 C 0.589 3.411 8 O -0.577 6.577 9 N -0.592 5.592 10 C 0.092 3.908 11 C 0.155 3.845 12 H 0.080 0.920 13 C -0.100 4.100 14 C -0.133 4.133 15 C 0.149 3.851 16 N -0.599 5.599 17 C -0.256 4.256 18 H 0.064 0.936 19 C -0.043 4.043 20 N -0.917 5.917 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.294 1.294 25 C 0.171 3.829 26 C -0.115 4.115 27 N -0.259 5.259 28 N -0.364 5.364 29 H 0.461 0.539 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.158 0.842 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.035 0.965 46 H 0.033 0.967 47 H 0.247 0.753 48 H 0.012 0.988 49 H 0.067 0.933 50 H 0.027 0.973 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.187 4.784 7.159 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.084 4.084 4 C -0.087 4.087 5 C -0.228 4.228 6 C -0.190 4.190 7 C 0.377 3.623 8 O -0.456 6.456 9 N -0.323 5.323 10 C -0.050 4.050 11 C 0.053 3.947 12 H 0.098 0.902 13 C -0.138 4.138 14 C -0.174 4.174 15 C 0.021 3.979 16 N -0.321 5.321 17 C -0.386 4.386 18 H 0.082 0.918 19 C -0.239 4.239 20 N -0.563 5.563 21 Si 0.789 3.211 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.221 1.221 25 C 0.047 3.953 26 C -0.155 4.155 27 N -0.096 5.096 28 N -0.081 5.081 29 H 0.309 0.691 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.176 0.824 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.030 0.970 49 H 0.085 0.915 50 H 0.046 0.954 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.452 4.745 7.558 26.030 hybrid contribution 0.825 -0.556 -0.105 1.000 sum -23.628 4.189 7.453 25.127 Atomic orbital electron populations 1.21758 0.94187 1.02186 1.02675 1.21521 0.96825 0.95237 1.02267 1.20369 0.83487 0.98691 1.05856 1.21768 0.96287 1.04495 0.86123 1.21645 0.90087 1.10180 1.00851 1.21660 0.94662 1.12081 0.90637 1.17458 0.82546 0.76064 0.86255 1.90727 1.87033 1.53220 1.14574 1.47958 1.05016 1.70395 1.08900 1.21897 1.02926 1.02466 0.77756 1.20308 0.82364 0.96579 0.95488 0.90153 1.21579 0.97166 0.96585 0.98517 1.22662 0.98971 0.98423 0.97360 1.20437 0.96290 0.87073 0.94067 1.44362 1.04476 1.08430 1.74875 1.19439 0.83571 1.19014 1.16573 0.91827 1.25519 1.00614 1.02114 0.95673 1.70110 1.34871 1.32969 1.18386 0.85331 0.81412 0.77454 0.76898 1.19905 1.22198 1.22066 1.19994 0.90151 0.91971 0.93146 1.21073 0.96834 0.94825 1.02758 1.73734 1.02491 1.19404 1.13971 1.43529 1.02266 1.51391 1.10901 0.69066 0.92646 0.91557 0.92112 0.92595 0.91968 0.87835 0.88150 0.82423 0.91626 0.89422 0.91747 0.92489 0.93114 0.91277 0.92972 0.94696 0.94870 0.94307 0.97019 0.91501 0.95400 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.12 -1.02 5.92 30.59 0.18 -0.84 16 3 C -0.05 -0.35 5.77 29.85 0.17 -0.17 16 4 C 0.04 0.62 6.48 41.40 0.27 0.89 16 5 C -0.20 -4.80 10.73 22.41 0.24 -4.56 16 6 C -0.03 -0.93 6.75 42.46 0.29 -0.65 16 7 C 0.59 22.02 7.67 86.75 0.67 22.68 16 8 O -0.58 -25.20 16.30 -3.95 -0.06 -25.26 16 9 N -0.59 -21.60 2.64 -832.28 -2.20 -23.80 16 10 C 0.09 2.80 8.48 127.77 1.08 3.88 16 11 C 0.16 6.37 2.29 43.90 0.10 6.47 16 12 H 0.08 3.62 5.13 -2.39 -0.01 3.61 16 13 C -0.10 -3.98 4.82 30.30 0.15 -3.84 16 14 C -0.13 -5.20 6.40 31.71 0.20 -5.00 16 15 C 0.15 6.57 5.13 87.43 0.45 7.02 16 16 N -0.60 -30.43 2.61 -708.83 -1.85 -32.28 16 17 C -0.26 -13.99 9.63 84.03 0.81 -13.18 16 18 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 19 C -0.04 -2.37 4.92 84.86 0.42 -1.95 16 20 N -0.92 -51.26 9.40 21.65 0.20 -51.06 16 21 Si 0.96 44.82 29.60 68.60 2.03 46.85 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 C 0.17 8.55 5.25 83.58 0.44 8.99 16 26 C -0.12 -5.26 3.85 28.36 0.11 -5.16 16 27 N -0.26 -6.15 9.01 -48.18 -0.43 -6.59 16 28 N -0.36 -5.52 6.83 -47.93 -0.33 -5.85 16 29 H 0.46 3.07 8.96 -219.99 -1.97 1.10 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.64 16 34 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.09 2.45 5.95 -2.39 -0.01 2.44 16 40 H 0.06 2.10 7.14 -2.39 -0.02 2.08 16 41 H 0.06 2.05 7.83 -2.39 -0.02 2.04 16 42 H 0.05 2.31 6.83 -2.38 -0.02 2.29 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.03 1.50 7.99 -2.39 -0.02 1.48 16 46 H 0.03 1.43 6.90 -2.39 -0.02 1.41 16 47 H 0.25 13.53 8.31 -92.71 -0.77 12.75 16 48 H 0.01 0.57 8.13 -2.39 -0.02 0.55 16 49 H 0.07 3.68 6.02 -2.39 -0.01 3.67 16 50 H 0.03 1.24 8.02 -2.39 -0.02 1.22 16 51 H 0.08 4.18 5.05 -2.39 -0.01 4.17 16 Total: -1.00 -68.96 391.33 2.60 -66.36 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -1.04 Total: 17.25 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.28 Total: 14.38 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -4.61 Total: -119.58 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.06 Total: -25.26 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.96 2.60 -66.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948666049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.947 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds