Wall clock time and date at job start Tue Mar 31 2020 19:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 C 1.50693 * 109.47399 * 119.99918 * 2 1 3 5 5 N 1.30451 * 125.98892 * 299.69019 * 4 2 1 6 6 N 1.39936 * 108.89532 * 179.84523 * 5 4 2 7 7 H 0.97006 * 125.75110 * 180.17865 * 6 5 4 8 8 C 1.34251 * 108.49314 * 0.42825 * 6 5 4 9 9 C 1.38041 * 107.42056 * 359.74924 * 8 6 5 10 10 C 1.47427 * 126.42043 * 180.02562 * 9 8 6 11 11 O 1.21598 * 120.00056 * 142.33045 * 10 9 8 12 12 N 1.34780 * 119.99562 * 322.33611 * 10 9 8 13 13 C 1.46491 * 120.00414 * 4.55415 * 12 10 9 14 14 C 1.46500 * 119.99460 * 184.55929 * 12 10 9 15 15 C 1.53002 * 109.47178 * 239.99803 * 14 12 10 16 16 C 1.53002 * 109.47338 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47116 * 59.99620 * 16 15 14 18 18 N 1.46508 * 109.46853 * 179.97438 * 17 16 15 19 19 C 1.36928 * 120.00432 * 275.00365 * 18 17 16 20 20 H 1.08004 * 120.00138 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00257 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99996 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00187 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47267 * 90.00160 * 23 21 19 25 25 H 1.48502 * 109.47671 * 209.99881 * 23 21 19 26 26 H 1.48494 * 109.47507 * 330.00285 * 23 21 19 27 27 C 1.52997 * 109.47436 * 300.00062 * 17 16 15 28 28 C 1.53001 * 109.46966 * 60.00268 * 27 17 16 29 29 H 1.08994 * 109.47256 * 299.99506 * 1 2 3 30 30 H 1.09001 * 109.46545 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47381 * 60.00227 * 1 2 3 32 32 H 1.09004 * 109.47205 * 240.00403 * 2 1 3 33 33 H 1.09002 * 109.47367 * 59.99961 * 3 2 1 34 34 H 1.09007 * 109.46951 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47234 * 299.99942 * 3 2 1 36 36 H 1.08006 * 126.29200 * 179.72557 * 8 6 5 37 37 H 1.09004 * 109.47051 * 84.76901 * 13 12 10 38 38 H 1.09001 * 109.47454 * 204.76581 * 13 12 10 39 39 H 1.09000 * 109.47694 * 324.76764 * 13 12 10 40 40 H 1.08999 * 109.47558 * 359.97438 * 14 12 10 41 41 H 1.09007 * 109.46952 * 300.00186 * 15 14 12 42 42 H 1.08993 * 109.47076 * 60.00053 * 15 14 12 43 43 H 1.09000 * 109.46415 * 299.99431 * 16 15 14 44 44 H 1.09003 * 109.46922 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.47208 * 60.00778 * 17 16 15 46 46 H 0.97005 * 119.99118 * 95.00637 * 18 17 16 47 47 H 0.96996 * 120.00104 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.47217 * 299.99853 * 27 17 16 49 49 H 1.09001 * 109.46942 * 179.97438 * 27 17 16 50 50 H 1.09004 * 109.46911 * 180.02562 * 28 27 17 51 51 H 1.08999 * 109.47491 * 59.99753 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7951 -0.3647 2.4657 6 7 2.4301 -1.2728 3.3203 7 1 2.4116 -1.2466 4.2898 8 6 3.0738 -2.1829 2.5722 9 6 2.8481 -1.8639 1.2483 10 6 3.3616 -2.5909 0.0730 11 8 2.6642 -2.7194 -0.9149 12 7 4.6039 -3.1132 0.0936 13 6 5.4066 -3.0460 1.3171 14 6 5.1515 -3.7480 -1.1078 15 6 5.4862 -5.2099 -0.8047 16 6 6.0587 -5.8727 -2.0593 17 6 7.3292 -5.1373 -2.4900 18 7 7.8777 -5.7725 -3.6910 19 6 8.7033 -6.8587 -3.5748 20 1 8.9505 -7.2471 -2.5978 21 6 9.2225 -7.4608 -4.7127 22 7 8.9216 -6.9872 -5.9033 23 14 10.3492 -8.9421 -4.5541 24 1 9.5373 -10.1855 -4.5687 25 1 11.3045 -8.9615 -5.6909 26 1 11.1016 -8.8574 -3.2767 27 6 6.9945 -3.6755 -2.7932 28 6 6.4221 -3.0126 -1.5387 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 3.6606 -3.0122 2.9389 37 1 5.1523 -3.8848 1.9650 38 1 6.4649 -3.0930 1.0604 39 1 5.2000 -2.1101 1.8364 40 1 4.4152 -3.7031 -1.9103 41 1 6.2225 -5.2551 -0.0021 42 1 4.5811 -5.7337 -0.4975 43 1 5.3227 -5.8275 -2.8620 44 1 6.2968 -6.9143 -1.8434 45 1 8.0652 -5.1826 -1.6873 46 1 7.6560 -5.4233 -4.5684 47 1 9.2841 -7.4082 -6.6984 48 1 6.2587 -3.6302 -3.5961 49 1 7.8998 -3.1515 -3.0997 50 1 6.1832 -1.9713 -1.7548 51 1 7.1580 -3.0579 -0.7358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963614389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:58 Heat of formation + Delta-G solvation = 31.565407 kcal Electronic energy + Delta-G solvation = -29462.633254 eV Core-core repulsion = 25591.100056 eV Total energy + Delta-G solvation = -3871.533199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83908 -39.81340 -37.82866 -35.97559 -35.28823 -33.46537 -31.34604 -31.00487 -30.38149 -30.15284 -27.69304 -27.31221 -26.86165 -23.97374 -23.64882 -22.78575 -22.22425 -20.99713 -19.81136 -19.30888 -19.24917 -17.96515 -17.06833 -16.67782 -16.17102 -15.57920 -15.07418 -14.97312 -14.86892 -14.75174 -14.17254 -13.88835 -13.73203 -13.58099 -13.48583 -13.25564 -12.94356 -12.86724 -12.57650 -12.39664 -12.33278 -12.02650 -11.77392 -11.67594 -11.42378 -11.40661 -11.26734 -10.91418 -10.87749 -10.72342 -10.68043 -10.63245 -10.15944 -10.11802 -9.85071 -9.82780 -9.68807 -9.53677 -9.05500 -8.85286 -8.57318 -6.91985 -5.73589 -3.01976 1.26321 1.95056 2.34423 2.91557 3.16646 3.44573 3.49465 3.51328 4.11848 4.28236 4.60952 4.67016 4.69511 4.93492 4.97049 4.98808 5.03872 5.10506 5.16913 5.27367 5.31117 5.34792 5.44798 5.47334 5.55183 5.62136 5.65613 5.67763 5.69868 5.80969 5.82361 5.88468 5.92179 6.03511 6.06774 6.08578 6.21078 6.30256 6.31752 6.36132 6.47521 6.61229 6.70349 6.73862 6.75831 7.01356 7.16531 7.21888 7.40039 7.72116 8.20164 8.45305 9.56105 10.15393 10.49856 11.49215 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.002251 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.240741 B =12437.621392 C =12968.652026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.142 4.142 4 C 0.139 3.861 5 N -0.294 5.294 6 N -0.465 5.465 7 H 0.443 0.557 8 C 0.097 3.903 9 C -0.278 4.278 10 C 0.591 3.409 11 O -0.536 6.536 12 N -0.605 5.605 13 C 0.071 3.929 14 C 0.141 3.859 15 C -0.120 4.120 16 C -0.132 4.132 17 C 0.178 3.822 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.188 0.812 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.113 14.921 20.640 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 C -0.200 4.200 4 C -0.029 4.029 5 N -0.115 5.115 6 N -0.169 5.169 7 H 0.287 0.713 8 C -0.055 4.055 9 C -0.293 4.293 10 C 0.379 3.621 11 O -0.413 6.413 12 N -0.337 5.337 13 C -0.072 4.072 14 C 0.039 3.961 15 C -0.160 4.160 16 C -0.174 4.174 17 C 0.069 3.931 18 N -0.366 5.366 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.160 4.160 28 C -0.158 4.158 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.204 0.796 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.078 0.922 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.923 15.547 20.914 29.546 hybrid contribution 1.114 -1.575 0.053 1.930 sum -12.809 13.972 20.967 28.265 Atomic orbital electron populations 1.21759 0.93505 1.02301 1.02068 1.19801 0.96465 0.95449 0.92751 1.21822 1.01125 0.94708 1.02322 1.22352 0.93835 0.93180 0.93508 1.77107 1.20001 1.14073 1.00365 1.46126 1.39840 1.21447 1.09526 0.71263 1.23331 0.96059 0.94987 0.91146 1.20287 1.12287 1.03805 0.92928 1.17322 0.80887 0.77725 0.86137 1.90766 1.56798 1.59121 1.34615 1.47822 1.14699 1.58088 1.13136 1.21960 0.97127 1.01130 0.87020 1.21255 0.96062 0.92072 0.86703 1.21860 1.00341 0.94221 0.99534 1.22235 0.99420 1.00274 0.95423 1.20219 0.92559 0.89589 0.90779 1.42441 1.56356 1.34724 1.03066 1.19229 1.20135 1.04806 0.92569 0.91273 1.24739 1.01245 0.99797 0.95323 1.69660 1.48975 1.42767 0.96750 0.86218 0.80366 0.82972 0.76803 1.21792 1.21833 1.20843 1.21768 1.00708 0.97108 0.96428 1.21819 0.96282 0.99006 0.98672 0.92365 0.92372 0.91859 0.87913 0.92183 0.92679 0.91783 0.79560 0.92796 0.90241 0.91241 0.87990 0.92236 0.92577 0.92417 0.91768 0.93719 0.78284 0.93554 0.91962 0.91538 0.92165 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 2 C -0.02 -0.26 3.25 -91.77 -0.30 -0.55 16 3 C -0.14 -1.25 9.17 37.16 0.34 -0.91 16 4 C 0.14 1.55 5.77 -82.02 -0.47 1.08 16 5 N -0.29 -2.99 12.63 33.89 0.43 -2.56 16 6 N -0.46 -3.14 7.29 30.85 0.22 -2.92 16 7 H 0.44 1.35 8.96 -182.72 -1.64 -0.28 16 8 C 0.10 0.69 9.74 -16.57 -0.16 0.53 16 9 C -0.28 -3.02 5.37 -105.07 -0.56 -3.58 16 10 C 0.59 7.81 7.38 -12.52 -0.09 7.72 16 11 O -0.54 -8.99 14.97 5.28 0.08 -8.91 16 12 N -0.61 -6.94 2.76 -175.21 -0.48 -7.42 16 13 C 0.07 0.54 8.06 59.84 0.48 1.02 16 14 C 0.14 1.90 2.51 -67.93 -0.17 1.73 16 15 C -0.12 -1.67 5.20 -26.73 -0.14 -1.81 16 16 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 17 C 0.18 3.44 2.77 -67.93 -0.19 3.25 16 18 N -0.73 -18.05 5.12 -53.42 -0.27 -18.32 16 19 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.12 -1.98 5.39 -26.73 -0.14 -2.12 16 28 C -0.12 -1.56 5.19 -26.73 -0.14 -1.70 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 1.26 6.48 -51.93 -0.34 0.93 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.19 0.69 6.29 -52.48 -0.33 0.36 16 37 H 0.05 0.31 7.32 -51.93 -0.38 -0.07 16 38 H 0.08 0.59 6.44 -51.93 -0.33 0.26 16 39 H 0.07 0.44 5.91 -51.93 -0.31 0.14 16 40 H 0.10 1.62 6.91 -51.93 -0.36 1.26 16 41 H 0.06 0.75 7.67 -51.92 -0.40 0.35 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 46 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.06 0.75 6.66 -51.93 -0.35 0.41 16 LS Contribution 398.98 15.07 6.01 6.01 Total: -1.00 -34.29 398.98 -9.70 -43.98 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -9.79 Total: 6.32 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.60 Total: -5.96 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.62 Total: -58.78 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.29 -9.70 -43.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963614389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.548 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds