Wall clock time and date at job start Tue Mar 31 2020 19:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 C 1.50693 * 109.47399 * 119.99918 * 2 1 3 5 5 N 1.30451 * 125.98892 * 299.69019 * 4 2 1 6 6 N 1.39936 * 108.89532 * 179.84523 * 5 4 2 7 7 H 0.97006 * 125.75110 * 180.17865 * 6 5 4 8 8 C 1.34251 * 108.49314 * 0.42825 * 6 5 4 9 9 C 1.38041 * 107.42056 * 359.74924 * 8 6 5 10 10 C 1.47427 * 126.42043 * 180.02562 * 9 8 6 11 11 O 1.21598 * 120.00056 * 142.33045 * 10 9 8 12 12 N 1.34780 * 119.99562 * 322.33611 * 10 9 8 13 13 C 1.46491 * 120.00414 * 4.55415 * 12 10 9 14 14 C 1.46500 * 119.99460 * 184.55929 * 12 10 9 15 15 C 1.53002 * 109.47178 * 239.99803 * 14 12 10 16 16 C 1.53002 * 109.47338 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47116 * 59.99620 * 16 15 14 18 18 N 1.46508 * 109.46853 * 179.97438 * 17 16 15 19 19 C 1.36928 * 120.00432 * 275.00365 * 18 17 16 20 20 H 1.08004 * 120.00138 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00257 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99996 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00187 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47267 * 90.00160 * 23 21 19 25 25 H 1.48502 * 109.47671 * 209.99881 * 23 21 19 26 26 H 1.48494 * 109.47507 * 330.00285 * 23 21 19 27 27 C 1.52997 * 109.47436 * 300.00062 * 17 16 15 28 28 C 1.53001 * 109.46966 * 60.00268 * 27 17 16 29 29 H 1.08994 * 109.47256 * 299.99506 * 1 2 3 30 30 H 1.09001 * 109.46545 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47381 * 60.00227 * 1 2 3 32 32 H 1.09004 * 109.47205 * 240.00403 * 2 1 3 33 33 H 1.09002 * 109.47367 * 59.99961 * 3 2 1 34 34 H 1.09007 * 109.46951 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47234 * 299.99942 * 3 2 1 36 36 H 1.08006 * 126.29200 * 179.72557 * 8 6 5 37 37 H 1.09004 * 109.47051 * 84.76901 * 13 12 10 38 38 H 1.09001 * 109.47454 * 204.76581 * 13 12 10 39 39 H 1.09000 * 109.47694 * 324.76764 * 13 12 10 40 40 H 1.08999 * 109.47558 * 359.97438 * 14 12 10 41 41 H 1.09007 * 109.46952 * 300.00186 * 15 14 12 42 42 H 1.08993 * 109.47076 * 60.00053 * 15 14 12 43 43 H 1.09000 * 109.46415 * 299.99431 * 16 15 14 44 44 H 1.09003 * 109.46922 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.47208 * 60.00778 * 17 16 15 46 46 H 0.97005 * 119.99118 * 95.00637 * 18 17 16 47 47 H 0.96996 * 120.00104 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.47217 * 299.99853 * 27 17 16 49 49 H 1.09001 * 109.46942 * 179.97438 * 27 17 16 50 50 H 1.09004 * 109.46911 * 180.02562 * 28 27 17 51 51 H 1.08999 * 109.47491 * 59.99753 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7951 -0.3647 2.4657 6 7 2.4301 -1.2728 3.3203 7 1 2.4116 -1.2466 4.2898 8 6 3.0738 -2.1829 2.5722 9 6 2.8481 -1.8639 1.2483 10 6 3.3616 -2.5909 0.0730 11 8 2.6642 -2.7194 -0.9149 12 7 4.6039 -3.1132 0.0936 13 6 5.4066 -3.0460 1.3171 14 6 5.1515 -3.7480 -1.1078 15 6 5.4862 -5.2099 -0.8047 16 6 6.0587 -5.8727 -2.0593 17 6 7.3292 -5.1373 -2.4900 18 7 7.8777 -5.7725 -3.6910 19 6 8.7033 -6.8587 -3.5748 20 1 8.9505 -7.2471 -2.5978 21 6 9.2225 -7.4608 -4.7127 22 7 8.9216 -6.9872 -5.9033 23 14 10.3492 -8.9421 -4.5541 24 1 9.5373 -10.1855 -4.5687 25 1 11.3045 -8.9615 -5.6909 26 1 11.1016 -8.8574 -3.2767 27 6 6.9945 -3.6755 -2.7932 28 6 6.4221 -3.0126 -1.5387 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 3.6606 -3.0122 2.9389 37 1 5.1523 -3.8848 1.9650 38 1 6.4649 -3.0930 1.0604 39 1 5.2000 -2.1101 1.8364 40 1 4.4152 -3.7031 -1.9103 41 1 6.2225 -5.2551 -0.0021 42 1 4.5811 -5.7337 -0.4975 43 1 5.3227 -5.8275 -2.8620 44 1 6.2968 -6.9143 -1.8434 45 1 8.0652 -5.1826 -1.6873 46 1 7.6560 -5.4233 -4.5684 47 1 9.2841 -7.4082 -6.6984 48 1 6.2587 -3.6302 -3.5961 49 1 7.8998 -3.1515 -3.0997 50 1 6.1832 -1.9713 -1.7548 51 1 7.1580 -3.0579 -0.7358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963614389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:56 Heat of formation + Delta-G solvation = 8.921761 kcal Electronic energy + Delta-G solvation = -29463.615156 eV Core-core repulsion = 25591.100056 eV Total energy + Delta-G solvation = -3872.515101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.54401 -40.83012 -39.09570 -36.89914 -36.39299 -35.09286 -32.85928 -31.74890 -31.66825 -31.26117 -29.01114 -28.03782 -27.76204 -25.69687 -24.35193 -23.93899 -23.52385 -22.14956 -20.82193 -20.52462 -20.00503 -19.06268 -18.69227 -17.66044 -17.19422 -16.73963 -16.41401 -15.79585 -15.70882 -15.56975 -15.51879 -15.35789 -15.11358 -14.69724 -14.50079 -14.31652 -13.99290 -13.96199 -13.71260 -13.39428 -13.18607 -13.07163 -13.04999 -12.94088 -12.78167 -12.38070 -12.37407 -12.19966 -12.17045 -12.02603 -12.01026 -11.94727 -11.69719 -11.59288 -11.45909 -11.09925 -10.82865 -10.77499 -10.49976 -9.79775 -9.50214 -8.96966 -7.90746 -5.18949 0.63611 1.13949 1.48396 1.50276 1.58389 1.77083 2.05298 2.29903 2.58878 3.41603 3.42328 3.65243 3.75754 3.87043 3.92813 4.01771 4.09988 4.23583 4.25364 4.33045 4.40404 4.40931 4.45194 4.47757 4.58028 4.58243 4.62453 4.65457 4.78368 4.79616 4.85356 4.93838 4.94123 4.95810 5.06055 5.09179 5.15486 5.20122 5.26509 5.27376 5.31237 5.32516 5.47019 5.52167 5.57989 5.66478 5.68584 6.30287 6.31733 6.46090 6.60601 7.27080 7.36885 8.14944 8.37156 9.33239 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.002251 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.240741 B =12437.621392 C =12968.652026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 C -0.134 4.134 4 C 0.125 3.875 5 N -0.313 5.313 6 N -0.447 5.447 7 H 0.461 0.539 8 C 0.130 3.870 9 C -0.313 4.313 10 C 0.588 3.412 11 O -0.586 6.586 12 N -0.601 5.601 13 C 0.060 3.940 14 C 0.148 3.852 15 C -0.106 4.106 16 C -0.124 4.124 17 C 0.175 3.825 18 N -0.741 5.741 19 C -0.232 4.232 20 H 0.078 0.922 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.971 3.029 24 H -0.290 1.290 25 H -0.298 1.298 26 H -0.266 1.266 27 C -0.113 4.113 28 C -0.106 4.106 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.370 0.630 47 H 0.249 0.751 48 H 0.047 0.953 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.462 15.200 24.616 31.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.049 4.049 3 C -0.192 4.192 4 C -0.043 4.043 5 N -0.135 5.135 6 N -0.154 5.154 7 H 0.310 0.690 8 C -0.024 4.024 9 C -0.328 4.328 10 C 0.378 3.622 11 O -0.467 6.467 12 N -0.331 5.331 13 C -0.082 4.082 14 C 0.044 3.956 15 C -0.145 4.145 16 C -0.165 4.165 17 C 0.067 3.933 18 N -0.380 5.380 19 C -0.364 4.364 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.801 3.199 24 H -0.217 1.217 25 H -0.225 1.225 26 H -0.191 1.191 27 C -0.152 4.152 28 C -0.144 4.144 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.245 0.755 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.201 0.799 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.273 15.855 25.007 32.449 hybrid contribution 0.871 -1.630 -1.085 2.144 sum -12.402 14.225 23.921 30.469 Atomic orbital electron populations 1.21705 0.92955 1.01511 1.02848 1.19768 0.96977 0.96123 0.92049 1.21757 1.00705 0.93761 1.02968 1.22418 0.94258 0.93706 0.93874 1.77050 1.20924 1.15305 1.00250 1.46165 1.38455 1.20398 1.10334 0.69045 1.23800 0.94320 0.94750 0.89542 1.20196 1.14391 1.04617 0.93636 1.17695 0.80930 0.77354 0.86224 1.90740 1.58288 1.60992 1.36668 1.47786 1.14531 1.57197 1.13629 1.22319 0.96880 1.03271 0.85715 1.20945 0.95329 0.92156 0.87161 1.21706 1.00883 0.93916 0.97946 1.22034 0.98160 0.99482 0.96805 1.20463 0.92958 0.90997 0.88889 1.42710 1.56474 1.34583 1.04210 1.19641 1.19191 1.04840 0.92770 0.90374 1.25569 1.03592 1.03022 0.95159 1.69829 1.50820 1.44470 0.97330 0.85164 0.78335 0.79426 0.77018 1.21728 1.22514 1.19084 1.21646 1.00304 0.95442 0.97840 1.21700 0.96424 0.98750 0.97567 0.91862 0.93889 0.90718 0.90465 0.91837 0.93191 0.90748 0.75481 0.89925 0.89521 0.89615 0.91211 0.89655 0.92196 0.94504 0.93420 0.93117 0.79901 0.94225 0.93420 0.91967 0.91529 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.18 71.98 0.66 -1.86 16 2 C -0.03 -0.61 3.25 -11.54 -0.04 -0.65 16 3 C -0.13 -2.31 9.17 71.98 0.66 -1.65 16 4 C 0.13 2.68 5.77 43.51 0.25 2.94 16 5 N -0.31 -5.78 12.63 -46.68 -0.59 -6.37 16 6 N -0.45 -4.49 7.29 -56.32 -0.41 -4.90 16 7 H 0.46 0.96 8.96 -213.42 -1.91 -0.96 16 8 C 0.13 1.33 9.74 84.28 0.82 2.15 16 9 C -0.31 -6.27 5.37 -20.15 -0.11 -6.38 16 10 C 0.59 15.14 7.38 86.66 0.64 15.77 16 11 O -0.59 -20.49 14.97 -4.02 -0.06 -20.55 16 12 N -0.60 -12.46 2.76 -826.48 -2.28 -14.74 16 13 C 0.06 0.64 8.06 127.77 1.03 1.67 16 14 C 0.15 3.81 2.51 44.99 0.11 3.92 16 15 C -0.11 -2.72 5.20 30.60 0.16 -2.56 16 16 C -0.12 -4.36 5.50 30.59 0.17 -4.19 16 17 C 0.17 6.69 2.77 44.99 0.12 6.82 16 18 N -0.74 -37.52 5.12 -322.94 -1.65 -39.17 16 19 C -0.23 -12.84 9.93 84.03 0.83 -12.00 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 22 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 23 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C -0.11 -3.69 5.39 30.59 0.16 -3.53 16 28 C -0.11 -2.60 5.19 30.60 0.16 -2.44 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 2.04 6.48 -2.39 -0.02 2.03 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.23 0.31 6.29 -2.91 -0.02 0.29 16 37 H 0.08 0.46 7.32 -2.39 -0.02 0.44 16 38 H 0.09 0.85 6.44 -2.39 -0.02 0.84 16 39 H 0.09 0.68 5.91 -2.39 -0.01 0.66 16 40 H 0.07 2.30 6.91 -2.39 -0.02 2.28 16 41 H 0.08 1.80 7.67 -2.38 -0.02 1.78 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 46 H 0.37 20.47 7.80 -92.70 -0.72 19.74 16 47 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 48 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 51 H 0.09 1.77 6.66 -2.39 -0.02 1.75 16 Total: -1.00 -78.21 398.98 1.73 -76.48 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -1.69 Total: 27.48 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 6.11 Total: -6.26 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -4.65 Total: -125.45 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.55 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -78.21 1.73 -76.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963614389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.405 kcal (2) G-P(sol) polarization free energy of solvation -78.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds