Wall clock time and date at job start Tue Mar 31 2020 19:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47507 * 2 1 4 4 C 1.50698 * 109.46964 * 179.97438 * 3 2 1 5 5 C 1.35364 * 126.38534 * 85.00732 * 4 3 2 6 6 C 1.41504 * 105.50070 * 180.02562 * 5 4 3 7 7 C 1.47707 * 126.51552 * 179.97438 * 6 5 4 8 8 O 1.21576 * 120.00412 * 355.98605 * 7 6 5 9 9 N 1.34777 * 120.00181 * 175.99198 * 7 6 5 10 10 C 1.46499 * 119.99586 * 6.35269 * 9 7 6 11 11 C 1.46502 * 120.00242 * 186.35902 * 9 7 6 12 12 C 1.52995 * 109.47059 * 55.29392 * 11 9 7 13 13 C 1.53003 * 109.46938 * 60.00438 * 12 11 9 14 14 C 1.52997 * 109.47395 * 59.99943 * 13 12 11 15 15 N 1.46502 * 109.47227 * 180.02562 * 14 13 12 16 16 C 1.36938 * 119.99532 * 274.99554 * 15 14 13 17 17 H 1.07994 * 120.00412 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99236 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99291 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00465 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47086 * 90.00095 * 20 18 16 22 22 H 1.48504 * 109.46772 * 210.00033 * 20 18 16 23 23 H 1.48500 * 109.47276 * 329.99937 * 20 18 16 24 24 C 1.53006 * 109.46797 * 299.99831 * 14 13 12 25 25 C 1.52997 * 109.47334 * 175.29879 * 11 9 7 26 26 N 1.31807 * 106.96364 * 0.26137 * 6 5 4 27 27 N 1.28470 * 110.07501 * 359.55581 * 26 6 5 28 28 H 0.96994 * 124.88352 * 180.20158 * 27 26 6 29 29 H 1.08998 * 109.47757 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47282 * 299.99975 * 1 2 3 31 31 H 1.09010 * 109.46901 * 59.99535 * 1 2 3 32 32 H 1.09005 * 109.46908 * 240.00216 * 2 1 3 33 33 H 1.09001 * 109.46793 * 120.00763 * 2 1 3 34 34 H 1.09001 * 109.46438 * 60.00411 * 3 2 1 35 35 H 1.08994 * 109.47148 * 300.00537 * 3 2 1 36 36 H 1.07998 * 127.24554 * 0.02562 * 5 4 3 37 37 H 1.08998 * 109.47592 * 275.46280 * 10 9 7 38 38 H 1.08999 * 109.47327 * 35.47315 * 10 9 7 39 39 H 1.09007 * 109.46635 * 155.47127 * 10 9 7 40 40 H 1.09000 * 109.46927 * 295.29794 * 11 9 7 41 41 H 1.09008 * 109.47140 * 179.97438 * 12 11 9 42 42 H 1.08994 * 109.47633 * 300.00549 * 12 11 9 43 43 H 1.09002 * 109.47341 * 179.97438 * 13 12 11 44 44 H 1.08998 * 109.47046 * 299.99358 * 13 12 11 45 45 H 1.08998 * 109.47501 * 59.99693 * 14 13 12 46 46 H 0.97002 * 119.99807 * 95.00202 * 15 14 13 47 47 H 0.97000 * 119.99473 * 180.02562 * 19 18 16 48 48 H 1.08999 * 109.47269 * 299.99715 * 24 14 13 49 49 H 1.09004 * 109.46988 * 180.02562 * 24 14 13 50 50 H 1.09002 * 109.47309 * 59.99063 * 25 11 9 51 51 H 1.08998 * 109.47536 * 180.02562 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3505 1.3473 -1.0846 6 6 5.6723 1.3905 -0.5815 7 6 6.9170 1.3203 -1.3737 8 8 6.8638 1.1410 -2.5750 9 7 8.1119 1.4547 -0.7648 10 6 8.1848 1.5310 0.6964 11 6 9.3376 1.5249 -1.5641 12 6 9.2161 2.6572 -2.5857 13 6 9.0082 3.9845 -1.8536 14 6 10.2017 4.2526 -0.9346 15 7 10.0022 5.5232 -0.2331 16 6 10.3663 6.7000 -0.8313 17 1 10.8007 6.6914 -1.8200 18 6 10.1777 7.9038 -0.1664 19 7 10.5272 9.0350 -0.7416 20 14 9.4282 7.9185 1.5445 21 1 10.5078 7.8128 2.5588 22 1 8.6813 9.1860 1.7468 23 1 8.4997 6.7685 1.6881 24 6 10.3231 3.1201 0.0871 25 6 10.5311 1.7928 -0.6451 26 7 5.5817 1.4991 0.7290 27 7 4.3476 1.5365 1.0840 28 1 4.0358 1.6168 1.9990 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8932 -0.5140 0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 4.0465 1.2574 -2.1170 37 1 8.0158 2.5594 1.0156 38 1 7.4227 0.8852 1.1325 39 1 9.1706 1.2050 1.0284 40 1 9.4858 0.5793 -2.0857 41 1 10.1284 2.7097 -3.1802 42 1 8.3659 2.4664 -3.2404 43 1 8.9221 4.7914 -2.5814 44 1 8.0962 3.9324 -1.2589 45 1 11.1137 4.3047 -1.5293 46 1 9.6124 5.5308 0.6551 47 1 10.3958 9.8762 -0.2768 48 1 9.4112 3.0680 0.6818 49 1 11.1731 3.3113 0.7421 50 1 10.6176 0.9861 0.0828 51 1 11.4431 1.8455 -1.2399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963771004.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:06 Heat of formation + Delta-G solvation = 58.981977 kcal Electronic energy + Delta-G solvation = -29952.092604 eV Core-core repulsion = 26081.748277 eV Total energy + Delta-G solvation = -3870.344327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.87773 -40.30026 -37.76714 -35.77532 -35.11602 -33.33111 -31.95060 -31.30787 -30.96750 -30.67336 -28.40352 -26.83935 -26.35532 -24.38036 -22.90067 -22.38358 -22.26157 -21.20829 -20.76297 -19.82844 -18.47256 -17.99984 -17.49590 -16.60779 -16.13690 -15.65950 -15.56449 -15.39309 -14.97967 -14.34980 -14.17159 -14.08659 -13.87009 -13.63169 -13.52764 -13.26756 -12.97964 -12.71102 -12.64710 -12.48692 -12.23240 -12.03190 -11.93381 -11.78556 -11.75344 -11.60564 -11.24809 -11.20604 -10.91960 -10.70034 -10.56184 -10.32645 -10.18806 -10.00554 -9.65517 -9.58966 -9.51395 -9.47858 -9.14213 -8.80954 -8.39231 -7.18385 -5.71508 -3.05573 1.49953 1.93964 2.61911 3.10769 3.39608 3.42245 3.46833 3.46959 4.16292 4.32469 4.45152 4.57753 4.63391 4.77963 4.93309 4.98060 5.03289 5.09784 5.20665 5.24521 5.29718 5.33566 5.43785 5.53717 5.55159 5.59168 5.61216 5.64660 5.69786 5.76184 5.79419 5.83133 5.91378 5.93094 5.95980 6.03146 6.11555 6.23275 6.28488 6.43254 6.53521 6.60420 6.64769 6.80113 6.90484 7.03549 7.17112 7.47700 7.70847 8.06632 8.29194 8.48316 9.27445 10.00351 10.21033 11.47306 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.003210 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.608213 B = 8720.897849 C =10090.320307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.051 4.051 4 C 0.016 3.984 5 C -0.175 4.175 6 C -0.003 4.003 7 C 0.602 3.398 8 O -0.532 6.532 9 N -0.590 5.590 10 C 0.070 3.930 11 C 0.154 3.846 12 C -0.137 4.137 13 C -0.128 4.128 14 C 0.185 3.815 15 N -0.749 5.749 16 C -0.236 4.236 17 H 0.090 0.910 18 C 0.001 3.999 19 N -0.937 5.937 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.279 1.279 24 C -0.151 4.151 25 C -0.120 4.120 26 N -0.254 5.254 27 N -0.384 5.384 28 H 0.442 0.558 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.358 0.642 47 H 0.258 0.742 48 H 0.078 0.922 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 -22.509 4.989 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.090 4.090 4 C -0.110 4.110 5 C -0.203 4.203 6 C -0.164 4.164 7 C 0.388 3.612 8 O -0.407 6.407 9 N -0.323 5.323 10 C -0.072 4.072 11 C 0.052 3.948 12 C -0.175 4.175 13 C -0.168 4.168 14 C 0.076 3.924 15 N -0.391 5.391 16 C -0.366 4.366 17 H 0.107 0.893 18 C -0.194 4.194 19 N -0.585 5.585 20 Si 0.715 3.285 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.205 1.205 24 C -0.189 4.189 25 C -0.158 4.158 26 N -0.090 5.090 27 N -0.098 5.098 28 H 0.286 0.714 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.178 0.822 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.191 0.809 47 H 0.068 0.932 48 H 0.097 0.903 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.165 -22.331 5.104 27.472 hybrid contribution -1.192 0.362 1.145 1.693 sum -16.357 -21.969 6.250 28.094 Atomic orbital electron populations 1.21783 0.95221 1.02009 1.02078 1.21538 0.96005 0.95489 1.02802 1.20229 0.86384 0.98242 1.04158 1.21400 0.94970 1.07217 0.87395 1.21482 0.90450 1.08637 0.99748 1.21978 0.95280 1.09291 0.89869 1.16872 0.81416 0.76874 0.86069 1.90744 1.86487 1.49720 1.13798 1.47679 1.05798 1.71273 1.07512 1.22334 1.02982 1.02556 0.79356 1.21084 0.82917 0.98840 0.91998 1.21970 1.02964 0.94731 0.97876 1.22105 1.00073 0.95289 0.99326 1.20172 0.95718 0.84657 0.91887 1.42795 1.75959 1.02364 1.17995 1.19099 1.33398 0.83000 1.01099 0.89256 1.24668 1.01475 0.95279 0.98017 1.69708 1.53862 0.96986 1.37938 0.86545 0.79205 0.76654 0.86114 1.21184 1.21907 1.20490 1.22382 1.02973 0.94233 0.99298 1.21802 0.97344 0.97968 0.98701 1.73788 1.00798 1.19286 1.15113 1.43443 1.03254 1.53272 1.09809 0.71372 0.92451 0.92659 0.92333 0.91146 0.92053 0.90608 0.88951 0.82177 0.91765 0.89916 0.90464 0.91096 0.91317 0.90262 0.91940 0.93226 0.92976 0.80917 0.93201 0.90339 0.91824 0.91614 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.15 0.37 -0.29 16 2 C -0.12 -0.63 5.92 -26.73 -0.16 -0.78 16 3 C -0.05 -0.29 5.77 -27.88 -0.16 -0.45 16 4 C 0.02 0.14 6.48 -82.21 -0.53 -0.39 16 5 C -0.18 -2.10 10.73 -39.36 -0.42 -2.52 16 6 C 0.00 -0.05 6.83 -82.77 -0.57 -0.61 16 7 C 0.60 9.54 7.19 -12.39 -0.09 9.45 16 8 O -0.53 -9.66 14.97 5.30 0.08 -9.58 16 9 N -0.59 -8.38 2.27 -175.10 -0.40 -8.78 16 10 C 0.07 0.86 7.33 59.85 0.44 1.30 16 11 C 0.15 2.14 2.98 -67.93 -0.20 1.94 16 12 C -0.14 -2.20 5.17 -26.73 -0.14 -2.34 16 13 C -0.13 -2.45 5.34 -26.73 -0.14 -2.59 16 14 C 0.18 3.64 2.77 -67.93 -0.19 3.45 16 15 N -0.75 -18.14 4.92 -53.42 -0.26 -18.40 16 16 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 19 N -0.94 -30.01 13.97 55.49 0.78 -29.24 16 20 Si 0.88 22.61 27.74 -169.99 -4.71 17.90 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 24 C -0.15 -2.33 4.82 -26.72 -0.13 -2.46 16 25 C -0.12 -1.49 4.91 -26.73 -0.13 -1.62 16 26 N -0.25 -3.06 8.84 33.42 0.30 -2.77 16 27 N -0.38 -3.42 6.83 33.50 0.23 -3.19 16 28 H 0.44 2.35 8.96 -190.44 -1.71 0.65 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.25 8.14 -51.92 -0.42 -0.18 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.06 0.88 6.50 -51.93 -0.34 0.54 16 38 H 0.08 0.95 5.73 -51.93 -0.30 0.65 16 39 H 0.08 0.81 5.22 -51.93 -0.27 0.54 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 42 H 0.08 1.40 6.05 -51.93 -0.31 1.08 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.05 1.01 7.52 -51.93 -0.39 0.62 16 45 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 46 H 0.36 8.56 5.66 -40.82 -0.23 8.33 16 47 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 48 H 0.08 1.19 3.87 -51.93 -0.20 0.99 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.07 0.68 6.72 -51.93 -0.35 0.33 16 51 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -35.39 388.77 -10.05 -45.44 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -9.61 Total: 7.71 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.31 Total: -4.96 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.64 Total: -62.38 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.39 -10.05 -45.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963771004.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.421 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds