Wall clock time and date at job start Tue Mar 31 2020 19:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47507 * 2 1 4 4 C 1.50698 * 109.46964 * 179.97438 * 3 2 1 5 5 C 1.35364 * 126.38534 * 85.00732 * 4 3 2 6 6 C 1.41504 * 105.50070 * 180.02562 * 5 4 3 7 7 C 1.47707 * 126.51552 * 179.97438 * 6 5 4 8 8 O 1.21576 * 120.00412 * 355.98605 * 7 6 5 9 9 N 1.34777 * 120.00181 * 175.99198 * 7 6 5 10 10 C 1.46499 * 119.99586 * 6.35269 * 9 7 6 11 11 C 1.46502 * 120.00242 * 186.35902 * 9 7 6 12 12 C 1.52995 * 109.47059 * 55.29392 * 11 9 7 13 13 C 1.53003 * 109.46938 * 60.00438 * 12 11 9 14 14 C 1.52997 * 109.47395 * 59.99943 * 13 12 11 15 15 N 1.46502 * 109.47227 * 180.02562 * 14 13 12 16 16 C 1.36938 * 119.99532 * 274.99554 * 15 14 13 17 17 H 1.07994 * 120.00412 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99236 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99291 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00465 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47086 * 90.00095 * 20 18 16 22 22 H 1.48504 * 109.46772 * 210.00033 * 20 18 16 23 23 H 1.48500 * 109.47276 * 329.99937 * 20 18 16 24 24 C 1.53006 * 109.46797 * 299.99831 * 14 13 12 25 25 C 1.52997 * 109.47334 * 175.29879 * 11 9 7 26 26 N 1.31807 * 106.96364 * 0.26137 * 6 5 4 27 27 N 1.28470 * 110.07501 * 359.55581 * 26 6 5 28 28 H 0.96994 * 124.88352 * 180.20158 * 27 26 6 29 29 H 1.08998 * 109.47757 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47282 * 299.99975 * 1 2 3 31 31 H 1.09010 * 109.46901 * 59.99535 * 1 2 3 32 32 H 1.09005 * 109.46908 * 240.00216 * 2 1 3 33 33 H 1.09001 * 109.46793 * 120.00763 * 2 1 3 34 34 H 1.09001 * 109.46438 * 60.00411 * 3 2 1 35 35 H 1.08994 * 109.47148 * 300.00537 * 3 2 1 36 36 H 1.07998 * 127.24554 * 0.02562 * 5 4 3 37 37 H 1.08998 * 109.47592 * 275.46280 * 10 9 7 38 38 H 1.08999 * 109.47327 * 35.47315 * 10 9 7 39 39 H 1.09007 * 109.46635 * 155.47127 * 10 9 7 40 40 H 1.09000 * 109.46927 * 295.29794 * 11 9 7 41 41 H 1.09008 * 109.47140 * 179.97438 * 12 11 9 42 42 H 1.08994 * 109.47633 * 300.00549 * 12 11 9 43 43 H 1.09002 * 109.47341 * 179.97438 * 13 12 11 44 44 H 1.08998 * 109.47046 * 299.99358 * 13 12 11 45 45 H 1.08998 * 109.47501 * 59.99693 * 14 13 12 46 46 H 0.97002 * 119.99807 * 95.00202 * 15 14 13 47 47 H 0.97000 * 119.99473 * 180.02562 * 19 18 16 48 48 H 1.08999 * 109.47269 * 299.99715 * 24 14 13 49 49 H 1.09004 * 109.46988 * 180.02562 * 24 14 13 50 50 H 1.09002 * 109.47309 * 59.99063 * 25 11 9 51 51 H 1.08998 * 109.47536 * 180.02562 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3505 1.3473 -1.0846 6 6 5.6723 1.3905 -0.5815 7 6 6.9170 1.3203 -1.3737 8 8 6.8638 1.1410 -2.5750 9 7 8.1119 1.4547 -0.7648 10 6 8.1848 1.5310 0.6964 11 6 9.3376 1.5249 -1.5641 12 6 9.2161 2.6572 -2.5857 13 6 9.0082 3.9845 -1.8536 14 6 10.2017 4.2526 -0.9346 15 7 10.0022 5.5232 -0.2331 16 6 10.3663 6.7000 -0.8313 17 1 10.8007 6.6914 -1.8200 18 6 10.1777 7.9038 -0.1664 19 7 10.5272 9.0350 -0.7416 20 14 9.4282 7.9185 1.5445 21 1 10.5078 7.8128 2.5588 22 1 8.6813 9.1860 1.7468 23 1 8.4997 6.7685 1.6881 24 6 10.3231 3.1201 0.0871 25 6 10.5311 1.7928 -0.6451 26 7 5.5817 1.4991 0.7290 27 7 4.3476 1.5365 1.0840 28 1 4.0358 1.6168 1.9990 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8932 -0.5140 0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 4.0465 1.2574 -2.1170 37 1 8.0158 2.5594 1.0156 38 1 7.4227 0.8852 1.1325 39 1 9.1706 1.2050 1.0284 40 1 9.4858 0.5793 -2.0857 41 1 10.1284 2.7097 -3.1802 42 1 8.3659 2.4664 -3.2404 43 1 8.9221 4.7914 -2.5814 44 1 8.0962 3.9324 -1.2589 45 1 11.1137 4.3047 -1.5293 46 1 9.6124 5.5308 0.6551 47 1 10.3958 9.8762 -0.2768 48 1 9.4112 3.0680 0.6818 49 1 11.1731 3.3113 0.7421 50 1 10.6176 0.9861 0.0828 51 1 11.4431 1.8455 -1.2399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963771004.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:04 Heat of formation + Delta-G solvation = 35.840986 kcal Electronic energy + Delta-G solvation = -29953.096073 eV Core-core repulsion = 26081.748277 eV Total energy + Delta-G solvation = -3871.347796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.72804 -41.49275 -39.10259 -36.72861 -36.24810 -34.89767 -33.37798 -32.57488 -32.04560 -31.82583 -29.94073 -27.56104 -27.36360 -25.76152 -24.58518 -23.62268 -22.88841 -22.18259 -21.91368 -21.18902 -19.81848 -19.41334 -18.76203 -17.64938 -17.17235 -16.90630 -16.79863 -16.40083 -16.03954 -15.93939 -15.35429 -15.00049 -14.86635 -14.81734 -14.70038 -14.53748 -14.37068 -13.96756 -13.90148 -13.62996 -13.28378 -13.21191 -13.06091 -12.90067 -12.88352 -12.68606 -12.45230 -12.20876 -12.13666 -11.99347 -11.85245 -11.72455 -11.53953 -11.51819 -11.37490 -11.10280 -11.05520 -10.66341 -10.40967 -9.94512 -9.52989 -9.28946 -8.02687 -5.35190 0.52228 1.09555 1.34091 1.38923 1.45845 1.80836 2.16176 2.37296 2.47401 3.27006 3.29897 3.53461 3.64567 3.74788 3.87393 3.96706 4.15829 4.18468 4.22070 4.28957 4.35457 4.38924 4.46421 4.51782 4.59281 4.61155 4.62363 4.69309 4.75815 4.82071 4.84074 4.93584 4.98112 5.00151 5.04408 5.12266 5.20390 5.22313 5.24718 5.27626 5.32396 5.36091 5.46776 5.47038 5.58170 5.73016 5.78573 6.10906 6.22320 6.38956 6.83195 7.08092 7.16056 7.85374 8.05032 9.19428 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.003210 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.608213 B = 8720.897849 C =10090.320307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.049 4.049 4 C 0.038 3.962 5 C -0.204 4.204 6 C -0.034 4.034 7 C 0.592 3.408 8 O -0.568 6.568 9 N -0.589 5.589 10 C 0.071 3.929 11 C 0.154 3.846 12 C -0.129 4.129 13 C -0.114 4.114 14 C 0.178 3.822 15 N -0.751 5.751 16 C -0.225 4.225 17 H 0.051 0.949 18 C -0.070 4.070 19 N -0.987 5.987 20 Si 0.959 3.041 21 H -0.273 1.273 22 H -0.298 1.298 23 H -0.256 1.256 24 C -0.142 4.142 25 C -0.110 4.110 26 N -0.258 5.258 27 N -0.368 5.368 28 H 0.460 0.540 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.022 0.978 44 H 0.036 0.964 45 H 0.040 0.960 46 H 0.364 0.636 47 H 0.257 0.743 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.102 0.898 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -24.844 8.112 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.087 4.087 4 C -0.088 4.088 5 C -0.232 4.232 6 C -0.194 4.194 7 C 0.380 3.620 8 O -0.446 6.446 9 N -0.321 5.321 10 C -0.071 4.071 11 C 0.052 3.948 12 C -0.168 4.168 13 C -0.154 4.154 14 C 0.071 3.929 15 N -0.393 5.393 16 C -0.357 4.357 17 H 0.069 0.931 18 C -0.261 4.261 19 N -0.638 5.638 20 Si 0.786 3.214 21 H -0.199 1.199 22 H -0.225 1.225 23 H -0.181 1.181 24 C -0.180 4.180 25 C -0.148 4.148 26 N -0.095 5.095 27 N -0.084 5.084 28 H 0.308 0.692 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.174 0.826 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.197 0.803 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.120 0.880 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.317 -24.726 8.263 30.756 hybrid contribution -0.882 1.080 0.081 1.396 sum -17.199 -23.647 8.344 30.407 Atomic orbital electron populations 1.21768 0.94323 1.02278 1.02544 1.21492 0.96692 0.94876 1.02412 1.20374 0.83823 0.98982 1.05551 1.21741 0.96232 1.04549 0.86322 1.21637 0.90505 1.10398 1.00657 1.21876 0.95185 1.11573 0.90728 1.17255 0.82469 0.76388 0.85937 1.90709 1.87140 1.51502 1.15295 1.47782 1.05400 1.70470 1.08429 1.22430 1.04729 1.01964 0.77950 1.21122 0.83626 0.98133 0.91954 1.21872 1.02711 0.93934 0.98285 1.21895 0.99349 0.95869 0.98326 1.20416 0.94952 0.84555 0.92992 1.42808 1.75817 1.02458 1.18255 1.19026 1.31975 0.84987 0.99667 0.93067 1.25541 1.02843 0.94718 1.02949 1.69904 1.56016 0.97738 1.40137 0.85347 0.78715 0.76991 0.80328 1.19880 1.22460 1.18111 1.22315 1.03773 0.93693 0.98225 1.21791 0.96811 0.97125 0.99036 1.73691 1.02218 1.19461 1.14110 1.43542 1.02476 1.51555 1.10825 0.69233 0.92336 0.91751 0.92317 0.92346 0.91718 0.88225 0.88555 0.82628 0.93135 0.89080 0.88036 0.89721 0.90236 0.92066 0.95858 0.94479 0.94184 0.80347 0.93451 0.89639 0.90978 0.87986 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 71.98 0.71 -0.26 16 2 C -0.12 -0.97 5.92 30.59 0.18 -0.79 16 3 C -0.05 -0.44 5.77 29.85 0.17 -0.26 16 4 C 0.04 0.62 6.48 41.40 0.27 0.89 16 5 C -0.20 -4.86 10.73 22.41 0.24 -4.62 16 6 C -0.03 -0.95 6.83 42.46 0.29 -0.66 16 7 C 0.59 18.84 7.19 86.75 0.62 19.46 16 8 O -0.57 -21.27 14.97 -3.96 -0.06 -21.33 16 9 N -0.59 -15.93 2.27 -826.16 -1.87 -17.80 16 10 C 0.07 1.54 7.33 127.77 0.94 2.48 16 11 C 0.15 4.00 2.98 44.99 0.13 4.13 16 12 C -0.13 -4.19 5.17 30.59 0.16 -4.03 16 13 C -0.11 -4.50 5.34 30.59 0.16 -4.34 16 14 C 0.18 6.98 2.77 44.99 0.12 7.10 16 15 N -0.75 -36.25 4.92 -322.93 -1.59 -37.84 16 16 C -0.23 -13.34 10.41 84.03 0.87 -12.46 16 17 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.99 -65.17 13.97 21.65 0.30 -64.86 16 20 Si 0.96 46.72 27.74 68.60 1.90 48.62 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 23 H -0.26 -11.39 6.52 99.48 0.65 -10.74 16 24 C -0.14 -4.00 4.82 30.60 0.15 -3.86 16 25 C -0.11 -2.34 4.91 30.60 0.15 -2.19 16 26 N -0.26 -5.80 8.84 -48.18 -0.43 -6.22 16 27 N -0.37 -5.70 6.83 -47.93 -0.33 -6.02 16 28 H 0.46 3.44 8.96 -220.00 -1.97 1.46 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.05 1.26 6.50 -2.39 -0.02 1.25 16 38 H 0.09 1.86 5.73 -2.39 -0.01 1.84 16 39 H 0.10 1.68 5.22 -2.38 -0.01 1.67 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.06 2.24 6.05 -2.39 -0.01 2.22 16 43 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.04 1.53 7.52 -2.39 -0.02 1.51 16 45 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 46 H 0.36 16.75 5.66 -92.71 -0.52 16.22 16 47 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 48 H 0.09 2.34 3.87 -2.39 -0.01 2.33 16 49 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 50 H 0.10 1.56 6.72 -2.39 -0.02 1.54 16 51 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -80.76 388.77 1.97 -78.79 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -1.60 Total: 29.85 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.65 Total: -3.19 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -3.91 Total: -132.75 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Total: -80.76 1.97 -78.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963771004.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.627 kcal (2) G-P(sol) polarization free energy of solvation -80.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds