Wall clock time and date at job start Tue Mar 31 2020 19:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.46880 * 2 1 4 4 C 1.50700 * 109.46739 * 180.02562 * 3 2 1 5 5 C 1.38049 * 126.29056 * 269.99941 * 4 3 2 6 6 C 1.47426 * 126.41511 * 0.02562 * 5 4 3 7 7 O 1.21607 * 120.00109 * 359.71714 * 6 5 4 8 8 N 1.34770 * 120.00219 * 179.71349 * 6 5 4 9 9 C 1.46502 * 120.00317 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.49587 * 34.93206 * 9 8 6 11 11 C 1.53196 * 109.52414 * 274.85425 * 9 8 6 12 12 N 1.46922 * 108.77358 * 294.66782 * 11 9 8 13 13 C 1.36932 * 120.63517 * 126.36891 * 12 11 9 14 14 H 1.08007 * 119.99621 * 332.62871 * 13 12 11 15 15 C 1.38811 * 120.00415 * 152.62606 * 13 12 11 16 16 N 1.31620 * 119.99933 * 159.36253 * 15 13 12 17 17 Si 1.86798 * 120.00113 * 339.35772 * 15 13 12 18 18 H 1.48496 * 109.46899 * 92.90191 * 17 15 13 19 19 H 1.48496 * 109.47202 * 212.90397 * 17 15 13 20 20 H 1.48503 * 109.46761 * 332.90616 * 17 15 13 21 21 C 1.46928 * 118.73740 * 306.38692 * 12 11 9 22 22 C 1.53190 * 108.77704 * 53.61118 * 21 12 11 23 23 C 1.53038 * 109.50251 * 154.99679 * 9 8 6 24 24 H 1.09004 * 109.46290 * 178.62017 * 23 9 8 25 25 C 1.52996 * 109.46214 * 298.60268 * 23 9 8 26 26 C 1.41295 * 107.17086 * 179.76365 * 5 4 3 27 27 N 1.30449 * 108.01972 * 0.23788 * 26 5 4 28 28 N 1.34259 * 126.29511 * 90.18410 * 4 3 2 29 29 C 1.46497 * 125.75357 * 359.97438 * 28 4 3 30 30 H 1.09000 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46958 * 299.99750 * 1 2 3 32 32 H 1.08998 * 109.47134 * 59.99999 * 1 2 3 33 33 H 1.08997 * 109.46756 * 239.99531 * 2 1 3 34 34 H 1.09003 * 109.46773 * 119.99743 * 2 1 3 35 35 H 1.09001 * 109.47120 * 60.00350 * 3 2 1 36 36 H 1.08998 * 109.47237 * 299.99937 * 3 2 1 37 37 H 0.96998 * 120.00022 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.58309 * 54.44928 * 11 9 8 39 39 H 1.08993 * 109.58682 * 174.87912 * 11 9 8 40 40 H 0.97000 * 119.99782 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.58490 * 173.39809 * 21 12 11 42 42 H 1.09000 * 109.58758 * 293.67947 * 21 12 11 43 43 H 1.08997 * 109.50229 * 185.41366 * 22 21 12 44 44 H 1.09009 * 109.49698 * 65.31415 * 22 21 12 45 45 H 1.08992 * 109.47346 * 59.99403 * 25 23 9 46 46 H 1.08997 * 109.47257 * 180.02562 * 25 23 9 47 47 H 1.09003 * 109.46683 * 299.99579 * 25 23 9 48 48 H 1.08000 * 125.98351 * 180.20355 * 26 5 4 49 49 H 1.09005 * 109.47017 * 270.32368 * 29 28 4 50 50 H 1.09003 * 109.47189 * 30.31571 * 29 28 4 51 51 H 1.08999 * 109.47593 * 150.32245 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3646 1.4423 1.1117 6 6 3.9269 1.4415 2.5195 7 8 2.7407 1.4462 2.7875 8 7 4.8413 1.4356 3.5095 9 6 4.4064 1.4343 4.9085 10 1 3.4916 0.8495 5.0045 11 6 4.1437 2.8731 5.3643 12 7 5.4133 3.6123 5.3521 13 6 5.5268 4.7931 4.6681 14 1 4.9000 4.9819 3.8090 15 6 6.4472 5.7476 5.0789 16 7 6.8549 6.6737 4.2372 17 14 7.1071 5.7176 6.8262 18 1 8.3679 4.9340 6.8657 19 1 7.3733 7.1067 7.2786 20 1 6.1048 5.0883 7.7231 21 6 6.5592 3.0602 6.0876 22 6 6.7949 1.6193 5.6238 23 6 5.5007 0.8182 5.7831 24 1 5.1867 0.8399 6.8267 25 6 5.7416 -0.6302 5.3532 26 6 5.6994 1.4367 0.6484 27 7 5.6738 1.4389 -0.6559 28 7 4.3413 1.4460 -1.0831 29 6 3.8892 1.4502 -2.4765 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 5.7875 1.4322 3.2958 38 1 3.4375 3.3488 4.6837 39 1 3.7338 2.8674 6.3742 40 1 7.4984 7.3404 4.5241 41 1 7.4469 3.6593 5.8843 42 1 6.3474 3.0721 7.1567 43 1 7.5801 1.1661 6.2288 44 1 7.0963 1.6190 4.5762 45 1 6.0552 -0.6521 4.3096 46 1 6.5207 -1.0694 5.9764 47 1 4.8203 -1.2013 5.4679 48 1 6.5854 1.4321 1.2659 49 1 3.7719 0.4235 -2.8235 50 1 2.9330 1.9689 -2.5467 51 1 4.6261 1.9612 -3.0961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967202698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:45 Heat of formation + Delta-G solvation = 49.439074 kcal Electronic energy + Delta-G solvation = -30721.256899 eV Core-core repulsion = 26850.498761 eV Total energy + Delta-G solvation = -3870.758138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.39209 -39.44589 -37.50151 -35.32751 -34.26624 -33.33555 -32.58859 -31.35907 -30.64988 -29.65136 -27.73020 -26.89527 -26.53011 -23.89175 -22.98821 -22.29574 -21.78023 -21.23356 -20.55443 -19.44356 -18.69152 -17.52639 -16.63904 -15.91302 -15.68831 -15.31188 -15.18129 -14.96083 -14.53200 -14.45752 -13.96024 -13.79844 -13.66009 -13.50790 -13.38270 -13.32771 -13.00968 -12.78847 -12.57855 -12.45437 -12.27459 -12.23800 -11.86165 -11.54543 -11.54013 -11.42679 -11.37014 -11.18039 -10.92874 -10.62966 -10.58519 -10.54957 -10.17141 -9.84467 -9.66468 -9.40990 -9.36251 -9.29246 -8.76229 -8.52437 -8.24581 -6.88159 -5.89202 -3.24205 1.65686 2.36210 2.38877 3.33964 3.51563 3.54320 3.74426 3.93361 4.43871 4.48284 4.57164 4.80327 4.89191 4.99046 5.00867 5.02074 5.08232 5.16709 5.18548 5.24402 5.25658 5.28708 5.47043 5.48396 5.62321 5.63597 5.74870 5.79637 5.81165 5.85953 5.93714 6.00210 6.04771 6.13896 6.16147 6.19942 6.24336 6.31101 6.38970 6.45537 6.54427 6.60134 6.66666 6.76935 6.85172 6.89121 7.14351 7.63978 8.02128 8.12624 8.39404 8.81743 9.00837 9.78296 10.15401 11.26971 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.003860 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.459279 B = 7252.378811 C = 7995.218668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.064 4.064 4 C 0.154 3.846 5 C -0.284 4.284 6 C 0.597 3.403 7 O -0.559 6.559 8 N -0.697 5.697 9 C 0.138 3.862 10 H 0.082 0.918 11 C 0.137 3.863 12 N -0.601 5.601 13 C -0.250 4.250 14 H 0.083 0.917 15 C 0.022 3.978 16 N -0.910 5.910 17 Si 0.882 3.118 18 H -0.290 1.290 19 H -0.306 1.306 20 H -0.271 1.271 21 C 0.123 3.877 22 C -0.130 4.130 23 C -0.095 4.095 24 H 0.078 0.922 25 C -0.143 4.143 26 C 0.088 3.912 27 N -0.302 5.302 28 N -0.366 5.366 29 C 0.098 3.902 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.188 0.812 49 H 0.075 0.925 50 H 0.088 0.912 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 -16.370 -8.531 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.102 4.102 4 C 0.022 3.978 5 C -0.299 4.299 6 C 0.385 3.615 7 O -0.439 6.439 8 N -0.347 5.347 9 C 0.032 3.968 10 H 0.100 0.900 11 C 0.010 3.990 12 N -0.324 5.324 13 C -0.378 4.378 14 H 0.101 0.899 15 C -0.176 4.176 16 N -0.553 5.553 17 Si 0.713 3.287 18 H -0.218 1.218 19 H -0.234 1.234 20 H -0.196 1.196 21 C -0.003 4.003 22 C -0.169 4.169 23 C -0.114 4.114 24 H 0.096 0.904 25 C -0.201 4.201 26 C -0.099 4.099 27 N -0.121 5.121 28 N -0.145 5.145 29 C -0.043 4.043 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.204 0.796 49 H 0.094 0.906 50 H 0.106 0.894 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.854 -16.189 -9.595 20.028 hybrid contribution 0.743 0.299 1.536 1.732 sum -6.111 -15.890 -8.058 18.836 Atomic orbital electron populations 1.21738 0.95154 1.01656 1.02101 1.21363 0.96110 0.95125 1.02165 1.20529 0.85947 0.98913 1.04852 1.21450 0.94455 0.95572 0.86289 1.20066 0.92654 1.23281 0.93898 1.17063 0.85474 0.75464 0.83520 1.90676 1.16545 1.52389 1.84290 1.45600 1.09451 1.74185 1.05479 1.21461 0.96756 0.98511 0.80111 0.90011 1.21342 0.88925 0.90384 0.98319 1.44296 1.05320 1.23163 1.59651 1.18886 1.20911 0.91174 1.06870 0.89929 1.25269 0.98745 0.96131 0.97490 1.69845 1.32865 1.18660 1.33947 0.86966 0.78413 0.75433 0.87881 1.21810 1.23411 1.19649 1.21362 0.91994 0.92476 0.94434 1.22084 0.95965 0.97463 1.01410 1.21319 0.96089 0.94342 0.99614 0.90377 1.21826 1.01056 0.95935 1.01262 1.24014 0.97435 0.96596 0.91873 1.77163 0.95809 1.25694 1.13408 1.48278 1.04166 1.55966 1.06138 1.21894 1.01242 1.03415 0.77757 0.92715 0.91966 0.92955 0.92837 0.90984 0.86803 0.91101 0.76743 0.91275 0.95305 0.92929 0.90958 0.95750 0.92460 0.92055 0.92771 0.93015 0.93041 0.79552 0.90606 0.89358 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.93 16 2 C -0.11 -1.12 5.92 -26.73 -0.16 -1.28 16 3 C -0.06 -0.75 4.90 -27.89 -0.14 -0.88 16 4 C 0.15 2.18 6.26 -81.60 -0.51 1.67 16 5 C -0.28 -4.57 6.13 -105.06 -0.64 -5.21 16 6 C 0.60 10.42 7.78 -12.52 -0.10 10.32 16 7 O -0.56 -10.68 14.50 5.27 0.08 -10.61 16 8 N -0.70 -11.46 4.24 -54.76 -0.23 -11.69 16 9 C 0.14 2.27 2.24 -67.81 -0.15 2.12 16 10 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 11 C 0.14 2.77 6.12 -3.71 -0.02 2.74 16 12 N -0.60 -13.87 2.69 -172.32 -0.46 -14.33 16 13 C -0.25 -6.94 10.03 -15.06 -0.15 -7.09 16 14 H 0.08 2.54 8.06 -52.48 -0.42 2.11 16 15 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 16 N -0.91 -28.02 13.97 55.49 0.78 -27.24 16 17 Si 0.88 22.36 24.34 -169.99 -4.14 18.23 16 18 H -0.29 -7.06 6.62 56.52 0.37 -6.68 16 19 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 20 H -0.27 -6.77 6.64 56.52 0.38 -6.40 16 21 C 0.12 2.56 4.21 -3.71 -0.02 2.54 16 22 C -0.13 -2.09 5.20 -26.61 -0.14 -2.22 16 23 C -0.09 -1.36 2.48 -90.58 -0.22 -1.58 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 C -0.14 -1.70 9.05 37.16 0.34 -1.36 16 26 C 0.09 1.34 11.50 -16.98 -0.20 1.15 16 27 N -0.30 -4.63 12.50 30.86 0.39 -4.24 16 28 N -0.37 -4.81 3.98 -63.34 -0.25 -5.06 16 29 C 0.10 0.80 11.24 59.85 0.67 1.47 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 1.62 6.50 -51.93 -0.34 1.28 16 36 H 0.07 0.66 7.05 -51.93 -0.37 0.29 16 37 H 0.40 6.21 5.59 -40.82 -0.23 5.98 16 38 H 0.07 1.54 7.93 -51.93 -0.41 1.13 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 41 H 0.07 1.67 4.50 -51.93 -0.23 1.44 16 42 H 0.02 0.51 7.07 -51.93 -0.37 0.14 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.98 6.40 -51.92 -0.33 0.65 16 45 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.19 2.43 7.50 -52.49 -0.39 2.03 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 0.54 7.02 -51.93 -0.36 0.18 16 51 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -33.86 393.54 -7.58 -41.44 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.51 Total: 5.57 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.16 Total: 2.00 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 0.21 Total: -62.56 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.86 -7.58 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967202698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.881 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds