Wall clock time and date at job start Tue Mar 31 2020 19:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.46880 * 2 1 4 4 C 1.50700 * 109.46739 * 180.02562 * 3 2 1 5 5 C 1.38049 * 126.29056 * 269.99941 * 4 3 2 6 6 C 1.47426 * 126.41511 * 0.02562 * 5 4 3 7 7 O 1.21607 * 120.00109 * 359.71714 * 6 5 4 8 8 N 1.34770 * 120.00219 * 179.71349 * 6 5 4 9 9 C 1.46502 * 120.00317 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.49587 * 34.93206 * 9 8 6 11 11 C 1.53196 * 109.52414 * 274.85425 * 9 8 6 12 12 N 1.46922 * 108.77358 * 294.66782 * 11 9 8 13 13 C 1.36932 * 120.63517 * 126.36891 * 12 11 9 14 14 H 1.08007 * 119.99621 * 332.62871 * 13 12 11 15 15 C 1.38811 * 120.00415 * 152.62606 * 13 12 11 16 16 N 1.31620 * 119.99933 * 159.36253 * 15 13 12 17 17 Si 1.86798 * 120.00113 * 339.35772 * 15 13 12 18 18 H 1.48496 * 109.46899 * 92.90191 * 17 15 13 19 19 H 1.48496 * 109.47202 * 212.90397 * 17 15 13 20 20 H 1.48503 * 109.46761 * 332.90616 * 17 15 13 21 21 C 1.46928 * 118.73740 * 306.38692 * 12 11 9 22 22 C 1.53190 * 108.77704 * 53.61118 * 21 12 11 23 23 C 1.53038 * 109.50251 * 154.99679 * 9 8 6 24 24 H 1.09004 * 109.46290 * 178.62017 * 23 9 8 25 25 C 1.52996 * 109.46214 * 298.60268 * 23 9 8 26 26 C 1.41295 * 107.17086 * 179.76365 * 5 4 3 27 27 N 1.30449 * 108.01972 * 0.23788 * 26 5 4 28 28 N 1.34259 * 126.29511 * 90.18410 * 4 3 2 29 29 C 1.46497 * 125.75357 * 359.97438 * 28 4 3 30 30 H 1.09000 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46958 * 299.99750 * 1 2 3 32 32 H 1.08998 * 109.47134 * 59.99999 * 1 2 3 33 33 H 1.08997 * 109.46756 * 239.99531 * 2 1 3 34 34 H 1.09003 * 109.46773 * 119.99743 * 2 1 3 35 35 H 1.09001 * 109.47120 * 60.00350 * 3 2 1 36 36 H 1.08998 * 109.47237 * 299.99937 * 3 2 1 37 37 H 0.96998 * 120.00022 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.58309 * 54.44928 * 11 9 8 39 39 H 1.08993 * 109.58682 * 174.87912 * 11 9 8 40 40 H 0.97000 * 119.99782 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.58490 * 173.39809 * 21 12 11 42 42 H 1.09000 * 109.58758 * 293.67947 * 21 12 11 43 43 H 1.08997 * 109.50229 * 185.41366 * 22 21 12 44 44 H 1.09009 * 109.49698 * 65.31415 * 22 21 12 45 45 H 1.08992 * 109.47346 * 59.99403 * 25 23 9 46 46 H 1.08997 * 109.47257 * 180.02562 * 25 23 9 47 47 H 1.09003 * 109.46683 * 299.99579 * 25 23 9 48 48 H 1.08000 * 125.98351 * 180.20355 * 26 5 4 49 49 H 1.09005 * 109.47017 * 270.32368 * 29 28 4 50 50 H 1.09003 * 109.47189 * 30.31571 * 29 28 4 51 51 H 1.08999 * 109.47593 * 150.32245 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3646 1.4423 1.1117 6 6 3.9269 1.4415 2.5195 7 8 2.7407 1.4462 2.7875 8 7 4.8413 1.4356 3.5095 9 6 4.4064 1.4343 4.9085 10 1 3.4916 0.8495 5.0045 11 6 4.1437 2.8731 5.3643 12 7 5.4133 3.6123 5.3521 13 6 5.5268 4.7931 4.6681 14 1 4.9000 4.9819 3.8090 15 6 6.4472 5.7476 5.0789 16 7 6.8549 6.6737 4.2372 17 14 7.1071 5.7176 6.8262 18 1 8.3679 4.9340 6.8657 19 1 7.3733 7.1067 7.2786 20 1 6.1048 5.0883 7.7231 21 6 6.5592 3.0602 6.0876 22 6 6.7949 1.6193 5.6238 23 6 5.5007 0.8182 5.7831 24 1 5.1867 0.8399 6.8267 25 6 5.7416 -0.6302 5.3532 26 6 5.6994 1.4367 0.6484 27 7 5.6738 1.4389 -0.6559 28 7 4.3413 1.4460 -1.0831 29 6 3.8892 1.4502 -2.4765 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 5.7875 1.4322 3.2958 38 1 3.4375 3.3488 4.6837 39 1 3.7338 2.8674 6.3742 40 1 7.4984 7.3404 4.5241 41 1 7.4469 3.6593 5.8843 42 1 6.3474 3.0721 7.1567 43 1 7.5801 1.1661 6.2288 44 1 7.0963 1.6190 4.5762 45 1 6.0552 -0.6521 4.3096 46 1 6.5207 -1.0694 5.9764 47 1 4.8203 -1.2013 5.4679 48 1 6.5854 1.4321 1.2659 49 1 3.7719 0.4235 -2.8235 50 1 2.9330 1.9689 -2.5467 51 1 4.6261 1.9612 -3.0961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967202698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:44 Heat of formation + Delta-G solvation = 26.974050 kcal Electronic energy + Delta-G solvation = -30722.231056 eV Core-core repulsion = 26850.498761 eV Total energy + Delta-G solvation = -3871.732295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.50639 -40.83196 -38.95637 -36.31161 -35.91179 -34.38735 -33.90582 -33.33793 -31.75960 -31.01233 -29.15289 -28.02146 -27.41629 -25.59069 -24.41217 -23.60415 -22.83388 -22.66585 -21.67500 -20.62017 -20.15096 -18.80194 -18.49108 -17.19352 -16.95593 -16.78918 -16.60052 -15.88014 -15.83931 -15.64211 -15.47780 -15.15227 -15.10130 -14.83226 -14.66267 -14.42259 -14.19107 -14.02834 -13.76447 -13.57084 -13.55004 -13.46632 -13.09494 -13.00182 -12.88809 -12.61130 -12.42197 -12.31024 -12.17757 -12.16915 -11.92222 -11.80031 -11.53733 -11.53211 -11.31724 -11.11945 -10.71289 -10.68294 -10.37992 -9.97987 -9.54294 -8.80763 -8.12720 -5.43585 0.53380 1.16237 1.31041 1.42952 1.43791 1.52863 2.43961 2.44119 2.63472 3.10813 3.36678 3.47362 3.52624 3.82886 3.89554 3.95557 4.07377 4.09935 4.12386 4.21979 4.34032 4.39247 4.41059 4.51052 4.56325 4.60988 4.62733 4.63779 4.75768 4.79530 4.81887 4.89441 4.93454 4.98989 5.01463 5.05006 5.07519 5.18097 5.20243 5.24593 5.34319 5.38983 5.42552 5.44139 5.52445 5.77306 5.90526 5.91994 6.15046 6.50513 6.79115 6.96278 7.46830 7.66866 8.05921 9.07760 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.003860 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.459279 B = 7252.378811 C = 7995.218668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.060 4.060 4 C 0.157 3.843 5 C -0.318 4.318 6 C 0.592 3.408 7 O -0.583 6.583 8 N -0.695 5.695 9 C 0.145 3.855 10 H 0.087 0.913 11 C 0.136 3.864 12 N -0.610 5.610 13 C -0.235 4.235 14 H 0.035 0.965 15 C -0.036 4.036 16 N -0.961 5.961 17 Si 0.952 3.048 18 H -0.270 1.270 19 H -0.317 1.317 20 H -0.262 1.262 21 C 0.116 3.884 22 C -0.122 4.122 23 C -0.086 4.086 24 H 0.091 0.909 25 C -0.135 4.135 26 C 0.081 3.919 27 N -0.322 5.322 28 N -0.360 5.360 29 C 0.084 3.916 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.401 0.599 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.259 0.741 41 H 0.049 0.951 42 H 0.035 0.965 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.199 0.801 49 H 0.100 0.900 50 H 0.112 0.888 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -19.096 -8.273 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.099 4.099 4 C 0.023 3.977 5 C -0.333 4.333 6 C 0.381 3.619 7 O -0.465 6.465 8 N -0.344 5.344 9 C 0.039 3.961 10 H 0.105 0.895 11 C 0.010 3.990 12 N -0.334 5.334 13 C -0.364 4.364 14 H 0.053 0.947 15 C -0.230 4.230 16 N -0.607 5.607 17 Si 0.781 3.219 18 H -0.196 1.196 19 H -0.247 1.247 20 H -0.186 1.186 21 C -0.008 4.008 22 C -0.161 4.161 23 C -0.105 4.105 24 H 0.109 0.891 25 C -0.192 4.192 26 C -0.106 4.106 27 N -0.142 5.142 28 N -0.139 5.139 29 C -0.055 4.055 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.237 0.763 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.215 0.785 49 H 0.118 0.882 50 H 0.131 0.869 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.735 -18.975 -9.338 22.195 hybrid contribution 0.596 1.155 1.316 1.849 sum -6.139 -17.820 -8.022 20.484 Atomic orbital electron populations 1.21716 0.93799 1.02478 1.02287 1.21299 0.97172 0.93741 1.01773 1.20566 0.84399 1.00073 1.04860 1.21798 0.95479 0.94227 0.86215 1.20163 0.93653 1.25729 0.93767 1.17362 0.85277 0.74921 0.84368 1.90651 1.17461 1.53622 1.84789 1.45592 1.09532 1.73857 1.05435 1.21366 0.98299 0.95927 0.80536 0.89534 1.21416 0.87162 0.92109 0.98283 1.44316 1.07359 1.22127 1.59635 1.18662 1.19220 0.93107 1.05449 0.94697 1.25880 0.99877 0.96034 1.01202 1.69990 1.34632 1.20174 1.35935 0.85846 0.78755 0.74894 0.82432 1.19610 1.24668 1.18621 1.21474 0.89844 0.94944 0.94584 1.21999 0.97870 0.94508 1.01706 1.21288 0.93992 0.95503 0.99707 0.89058 1.21744 1.02163 0.93849 1.01489 1.24224 0.97645 0.96539 0.92158 1.77091 0.97385 1.26329 1.13348 1.48660 1.03238 1.54362 1.07599 1.22381 1.02491 1.05512 0.75154 0.91583 0.93512 0.91038 0.90941 0.93579 0.89696 0.88084 0.76319 0.94713 0.93970 0.93164 0.93260 0.94750 0.89210 0.92354 0.93002 0.90900 0.92355 0.78456 0.88201 0.86937 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.99 0.71 -1.59 16 2 C -0.10 -1.97 5.92 30.60 0.18 -1.79 16 3 C -0.06 -1.38 4.90 29.85 0.15 -1.24 16 4 C 0.16 4.41 6.26 42.14 0.26 4.68 16 5 C -0.32 -10.52 6.13 -20.15 -0.12 -10.64 16 6 C 0.59 21.41 7.78 86.66 0.67 22.09 16 7 O -0.58 -23.31 14.50 -4.05 -0.06 -23.37 16 8 N -0.69 -23.09 4.24 -445.43 -1.89 -24.98 16 9 C 0.14 4.68 2.24 45.07 0.10 4.78 16 10 H 0.09 2.76 7.58 -2.38 -0.02 2.74 16 11 C 0.14 5.57 6.12 86.36 0.53 6.09 16 12 N -0.61 -28.36 2.69 -699.10 -1.88 -30.24 16 13 C -0.23 -13.56 10.03 84.03 0.84 -12.71 16 14 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 15 C -0.04 -2.11 5.23 84.86 0.44 -1.67 16 16 N -0.96 -61.50 13.97 21.65 0.30 -61.20 16 17 Si 0.95 46.83 24.34 68.60 1.67 48.50 16 18 H -0.27 -12.28 6.62 99.48 0.66 -11.62 16 19 H -0.32 -16.12 7.11 99.48 0.71 -15.41 16 20 H -0.26 -12.31 6.64 99.48 0.66 -11.65 16 21 C 0.12 4.62 4.21 86.36 0.36 4.98 16 22 C -0.12 -3.57 5.20 30.67 0.16 -3.41 16 23 C -0.09 -2.21 2.48 -10.77 -0.03 -2.24 16 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 25 C -0.14 -2.72 9.05 71.98 0.65 -2.07 16 26 C 0.08 2.52 11.50 85.65 0.99 3.51 16 27 N -0.32 -9.81 12.50 -56.27 -0.70 -10.51 16 28 N -0.36 -9.08 3.98 -354.31 -1.41 -10.49 16 29 C 0.08 1.16 11.24 127.77 1.44 2.59 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 2.51 6.50 -2.39 -0.02 2.50 16 36 H 0.10 1.67 7.05 -2.39 -0.02 1.65 16 37 H 0.40 12.59 5.59 -92.71 -0.52 12.07 16 38 H 0.03 1.62 7.93 -2.39 -0.02 1.61 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.05 2.20 4.50 -2.39 -0.01 2.19 16 42 H 0.03 1.32 7.07 -2.39 -0.02 1.31 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.76 6.40 -2.38 -0.02 1.74 16 45 H 0.05 1.08 7.54 -2.39 -0.02 1.06 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.20 5.29 7.50 -2.91 -0.02 5.26 16 49 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.11 1.02 7.02 -2.39 -0.02 1.00 16 51 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -77.71 393.54 3.68 -74.03 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.31 Total: 26.91 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 7.34 Total: 11.36 kcal Atomic # 7 Polarization: -131.85 SS G_CDS: -5.58 Total: -137.43 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.06 Total: -23.37 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.67 Total: 48.50 kcal Total: -77.71 3.68 -74.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967202698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.999 kcal (2) G-P(sol) polarization free energy of solvation -77.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds