Wall clock time and date at job start Tue Mar 31 2020 19:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 C 1.50693 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.38047 * 126.29353 * 269.99753 * 4 3 2 6 6 C 1.47433 * 126.41148 * 359.93275 * 5 4 3 7 7 O 1.21593 * 120.00037 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99453 * 180.27132 * 6 5 4 9 9 C 1.46506 * 119.99583 * 179.72098 * 8 6 5 10 10 H 1.08998 * 109.49843 * 325.07179 * 9 8 6 11 11 C 1.53199 * 109.49291 * 85.16514 * 9 8 6 12 12 N 1.46925 * 108.77266 * 174.58804 * 11 9 8 13 13 C 1.36939 * 120.63395 * 126.37104 * 12 11 9 14 14 H 1.08000 * 119.99479 * 332.63749 * 13 12 11 15 15 C 1.38805 * 120.00324 * 152.64088 * 13 12 11 16 16 N 1.31617 * 120.00367 * 159.34085 * 15 13 12 17 17 Si 1.86803 * 119.99869 * 339.34720 * 15 13 12 18 18 H 1.48499 * 109.47450 * 92.96189 * 17 15 13 19 19 H 1.48499 * 109.46758 * 212.96120 * 17 15 13 20 20 H 1.48503 * 109.47103 * 332.95828 * 17 15 13 21 21 C 1.46931 * 118.73814 * 306.38847 * 12 11 9 22 22 C 1.53197 * 108.77463 * 53.60873 * 21 12 11 23 23 C 1.53035 * 109.49758 * 205.00068 * 9 8 6 24 24 H 1.09002 * 109.45901 * 298.70861 * 23 9 8 25 25 C 1.52999 * 109.45717 * 58.66751 * 23 9 8 26 26 C 1.41290 * 107.17366 * 180.19011 * 5 4 3 27 27 N 1.30451 * 108.02133 * 359.62329 * 26 5 4 28 28 N 1.34260 * 126.29457 * 89.95893 * 4 3 2 29 29 C 1.46504 * 125.74858 * 0.05726 * 28 4 3 30 30 H 1.08999 * 109.47227 * 59.99679 * 1 2 3 31 31 H 1.09003 * 109.47459 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47175 * 300.00029 * 1 2 3 33 33 H 1.09004 * 109.47175 * 239.99971 * 2 1 3 34 34 H 1.08999 * 109.47227 * 120.00321 * 2 1 3 35 35 H 1.09004 * 109.46973 * 59.99848 * 3 2 1 36 36 H 1.08999 * 109.47186 * 300.00346 * 3 2 1 37 37 H 0.97000 * 120.00417 * 359.72844 * 8 6 5 38 38 H 1.09005 * 109.58525 * 294.37267 * 11 9 8 39 39 H 1.08998 * 109.58720 * 54.79727 * 11 9 8 40 40 H 0.96995 * 120.00547 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.58404 * 293.82375 * 21 12 11 42 42 H 1.08999 * 109.70383 * 173.47003 * 21 12 11 43 43 H 1.08998 * 109.49741 * 185.41259 * 22 21 12 44 44 H 1.09003 * 109.49598 * 65.31450 * 22 21 12 45 45 H 1.08993 * 109.47385 * 60.00357 * 25 23 9 46 46 H 1.09008 * 109.46761 * 179.97438 * 25 23 9 47 47 H 1.09003 * 109.47271 * 299.99575 * 25 23 9 48 48 H 1.07996 * 125.99274 * 179.77065 * 26 5 4 49 49 H 1.09000 * 109.47282 * 89.99725 * 29 28 4 50 50 H 1.08996 * 109.46990 * 209.99692 * 29 28 4 51 51 H 1.09000 * 109.46947 * 329.99764 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3636 1.4426 1.1136 6 6 3.9247 1.4443 2.5211 7 8 2.7384 1.4461 2.7881 8 7 4.8385 1.4498 3.5119 9 6 4.4024 1.4576 4.9105 10 1 3.4899 2.0465 5.0037 11 6 4.1340 0.0212 5.3703 12 7 3.8245 0.0345 6.8065 13 6 2.6771 -0.5450 7.2785 14 1 1.8075 -0.6175 6.6421 15 6 2.6315 -1.0392 8.5748 16 7 1.4716 -1.2174 9.1709 17 14 4.2164 -1.4513 9.4735 18 1 4.6544 -0.2764 10.2690 19 1 3.9858 -2.6047 10.3800 20 1 5.2690 -1.8007 8.4859 21 6 4.7694 0.6818 7.7268 22 6 5.0308 2.1108 7.2405 23 6 5.4985 2.0722 5.7839 24 1 6.4034 1.4691 5.7089 25 6 5.7936 3.4951 5.3053 26 6 5.6988 1.4470 0.6514 27 7 5.6743 1.4410 -0.6529 28 7 4.3421 1.4415 -1.0811 29 6 3.8911 1.4414 -2.4750 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 5.7848 1.4487 3.2989 38 1 3.2876 -0.3872 4.8179 39 1 5.0184 -0.5907 5.1927 40 1 1.4397 -1.5631 10.0766 41 1 5.7056 0.1238 7.7414 42 1 4.3448 0.7092 8.7303 43 1 5.8025 2.5700 7.8584 44 1 4.1122 2.6933 7.3122 45 1 4.8888 4.0984 5.3796 46 1 6.5740 3.9332 5.9276 47 1 6.1279 3.4677 4.2682 48 1 6.5844 1.4517 1.2695 49 1 3.7800 2.4691 -2.8210 50 1 4.6255 0.9269 -3.0945 51 1 2.9320 0.9283 -2.5465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967202708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:51 Heat of formation + Delta-G solvation = 47.562946 kcal Electronic energy + Delta-G solvation = -30076.047916 eV Core-core repulsion = 26205.208422 eV Total energy + Delta-G solvation = -3870.839493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.64441 -39.42637 -37.64741 -35.46220 -34.48617 -33.53059 -32.90932 -31.36066 -30.80862 -29.44969 -27.78063 -27.03969 -26.66466 -23.92548 -23.20233 -22.05671 -21.85657 -21.23823 -20.37365 -19.91909 -19.22987 -17.54291 -16.76871 -16.02671 -15.90789 -15.58273 -15.12272 -14.97931 -14.72998 -14.64705 -13.95580 -13.87108 -13.67879 -13.64484 -13.45280 -13.26124 -13.05665 -12.98515 -12.79704 -12.56764 -12.36410 -12.12972 -12.02476 -11.62919 -11.61351 -11.40123 -11.23842 -11.08909 -10.87701 -10.83117 -10.70167 -10.58922 -10.08673 -9.84903 -9.68788 -9.60654 -9.53453 -9.36889 -8.91786 -8.69930 -8.40331 -6.90688 -5.87924 -3.23803 1.41859 2.09225 2.12583 3.35499 3.49869 3.52362 3.55338 3.65196 4.22149 4.29339 4.58491 4.66043 4.74849 4.81029 4.91672 5.00477 5.03123 5.05302 5.13061 5.14693 5.20276 5.30736 5.36166 5.39762 5.49281 5.59805 5.67499 5.77815 5.82462 5.89298 5.90678 5.98452 6.01379 6.10564 6.16931 6.17699 6.20200 6.25687 6.33759 6.41041 6.56525 6.63964 6.67318 6.68054 6.72439 6.87051 7.04273 7.37050 7.86219 8.03488 8.40745 8.60458 9.01557 9.78804 10.15066 11.28191 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.003276 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.000517 B = 8546.102245 C = 9826.864706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.066 4.066 4 C 0.160 3.840 5 C -0.290 4.290 6 C 0.591 3.409 7 O -0.538 6.538 8 N -0.718 5.718 9 C 0.135 3.865 10 H 0.091 0.909 11 C 0.145 3.855 12 N -0.601 5.601 13 C -0.256 4.256 14 H 0.087 0.913 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.882 3.118 18 H -0.289 1.289 19 H -0.304 1.304 20 H -0.271 1.271 21 C 0.122 3.878 22 C -0.126 4.126 23 C -0.092 4.092 24 H 0.068 0.932 25 C -0.143 4.143 26 C 0.082 3.918 27 N -0.302 5.302 28 N -0.365 5.365 29 C 0.096 3.904 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.392 0.608 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.188 0.812 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.412 8.041 -21.845 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.105 4.105 4 C 0.027 3.973 5 C -0.305 4.305 6 C 0.378 3.622 7 O -0.416 6.416 8 N -0.369 5.369 9 C 0.030 3.970 10 H 0.109 0.891 11 C 0.017 3.983 12 N -0.325 5.325 13 C -0.384 4.384 14 H 0.104 0.896 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.713 3.287 18 H -0.217 1.217 19 H -0.233 1.233 20 H -0.196 1.196 21 C -0.003 4.003 22 C -0.166 4.166 23 C -0.111 4.111 24 H 0.086 0.914 25 C -0.201 4.201 26 C -0.106 4.106 27 N -0.121 5.121 28 N -0.144 5.144 29 C -0.045 4.045 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.225 0.775 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.205 0.795 49 H 0.096 0.904 50 H 0.111 0.889 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.116 7.960 -22.736 25.118 hybrid contribution 1.082 -0.283 1.172 1.620 sum 8.198 7.677 -21.564 24.314 Atomic orbital electron populations 1.21736 0.94881 1.02044 1.02057 1.21389 0.96439 0.94755 1.02415 1.20577 0.85616 0.99381 1.04879 1.21553 0.94660 0.94846 0.86193 1.20111 0.92667 1.23781 0.93914 1.17145 0.85699 0.75933 0.83396 1.90772 1.16305 1.50518 1.84029 1.45824 1.09015 1.75685 1.06330 1.21665 0.97801 0.99626 0.77905 0.89111 1.21231 0.98943 0.92562 0.85524 1.44292 1.23346 1.63992 1.00887 1.18954 0.88817 1.32284 0.98326 0.89581 1.25258 0.96236 0.99066 0.97026 1.69841 1.23811 1.48367 1.13187 0.86959 0.85346 0.77161 0.79252 1.21659 1.23269 1.19631 1.21391 0.93028 0.90867 0.95055 1.22068 1.00878 0.99594 0.94035 1.21302 0.97897 0.96006 0.95929 0.91404 1.21832 1.01350 0.96558 1.00341 1.23995 0.97283 0.97341 0.91969 1.77150 0.96118 1.25539 1.13311 1.48312 1.04050 1.55794 1.06284 1.21944 1.01342 1.03702 0.77503 0.93069 0.92424 0.91780 0.92838 0.90625 0.86743 0.90999 0.77466 0.91387 0.96107 0.92843 0.95749 0.90816 0.92327 0.91396 0.92727 0.92992 0.93082 0.79527 0.90400 0.88915 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.11 -1.15 5.92 -26.73 -0.16 -1.31 16 3 C -0.07 -0.68 4.67 -27.89 -0.13 -0.81 16 4 C 0.16 1.87 6.26 -81.60 -0.51 1.36 16 5 C -0.29 -3.76 6.13 -105.06 -0.64 -4.41 16 6 C 0.59 9.05 7.78 -12.51 -0.10 8.95 16 7 O -0.54 -10.10 14.50 5.28 0.08 -10.02 16 8 N -0.72 -9.91 4.36 -54.76 -0.24 -10.15 16 9 C 0.14 2.29 2.07 -67.81 -0.14 2.15 16 10 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 11 C 0.14 2.99 6.09 -3.71 -0.02 2.97 16 12 N -0.60 -14.59 2.77 -172.31 -0.48 -15.06 16 13 C -0.26 -7.35 10.04 -15.06 -0.15 -7.50 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 16 N -0.91 -28.39 13.97 55.49 0.78 -27.61 16 17 Si 0.88 22.63 24.35 -169.99 -4.14 18.49 16 18 H -0.29 -7.09 6.62 56.52 0.37 -6.72 16 19 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 20 H -0.27 -6.82 6.63 56.52 0.37 -6.45 16 21 C 0.12 2.65 4.20 -3.71 -0.02 2.63 16 22 C -0.13 -2.17 5.36 -26.61 -0.14 -2.32 16 23 C -0.09 -1.36 2.27 -90.58 -0.21 -1.57 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 C -0.14 -1.73 9.02 37.16 0.34 -1.40 16 26 C 0.08 0.91 11.50 -16.98 -0.20 0.71 16 27 N -0.30 -3.59 12.50 30.86 0.39 -3.20 16 28 N -0.36 -3.81 3.98 -63.34 -0.25 -4.06 16 29 C 0.10 0.57 11.06 59.85 0.66 1.23 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.11 1.46 6.50 -51.93 -0.34 1.12 16 36 H 0.07 0.55 7.70 -51.93 -0.40 0.15 16 37 H 0.39 4.19 7.26 -40.82 -0.30 3.89 16 38 H 0.07 1.54 7.93 -51.93 -0.41 1.13 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 41 H 0.02 0.52 7.08 -51.93 -0.37 0.15 16 42 H 0.07 1.76 4.50 -51.93 -0.23 1.53 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 47 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 48 H 0.19 1.45 7.50 -52.49 -0.39 1.05 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.38 7.62 -51.93 -0.40 -0.02 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -35.01 397.52 -7.74 -42.75 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.72 Total: 2.64 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.14 Total: 0.24 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.19 Total: -60.09 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.14 Total: 18.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.01 -7.74 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967202708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.310 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds