Wall clock time and date at job start Tue Mar 31 2020 19:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 C 1.50693 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.38047 * 126.29353 * 269.99753 * 4 3 2 6 6 C 1.47433 * 126.41148 * 359.93275 * 5 4 3 7 7 O 1.21593 * 120.00037 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99453 * 180.27132 * 6 5 4 9 9 C 1.46506 * 119.99583 * 179.72098 * 8 6 5 10 10 H 1.08998 * 109.49843 * 325.07179 * 9 8 6 11 11 C 1.53199 * 109.49291 * 85.16514 * 9 8 6 12 12 N 1.46925 * 108.77266 * 174.58804 * 11 9 8 13 13 C 1.36939 * 120.63395 * 126.37104 * 12 11 9 14 14 H 1.08000 * 119.99479 * 332.63749 * 13 12 11 15 15 C 1.38805 * 120.00324 * 152.64088 * 13 12 11 16 16 N 1.31617 * 120.00367 * 159.34085 * 15 13 12 17 17 Si 1.86803 * 119.99869 * 339.34720 * 15 13 12 18 18 H 1.48499 * 109.47450 * 92.96189 * 17 15 13 19 19 H 1.48499 * 109.46758 * 212.96120 * 17 15 13 20 20 H 1.48503 * 109.47103 * 332.95828 * 17 15 13 21 21 C 1.46931 * 118.73814 * 306.38847 * 12 11 9 22 22 C 1.53197 * 108.77463 * 53.60873 * 21 12 11 23 23 C 1.53035 * 109.49758 * 205.00068 * 9 8 6 24 24 H 1.09002 * 109.45901 * 298.70861 * 23 9 8 25 25 C 1.52999 * 109.45717 * 58.66751 * 23 9 8 26 26 C 1.41290 * 107.17366 * 180.19011 * 5 4 3 27 27 N 1.30451 * 108.02133 * 359.62329 * 26 5 4 28 28 N 1.34260 * 126.29457 * 89.95893 * 4 3 2 29 29 C 1.46504 * 125.74858 * 0.05726 * 28 4 3 30 30 H 1.08999 * 109.47227 * 59.99679 * 1 2 3 31 31 H 1.09003 * 109.47459 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47175 * 300.00029 * 1 2 3 33 33 H 1.09004 * 109.47175 * 239.99971 * 2 1 3 34 34 H 1.08999 * 109.47227 * 120.00321 * 2 1 3 35 35 H 1.09004 * 109.46973 * 59.99848 * 3 2 1 36 36 H 1.08999 * 109.47186 * 300.00346 * 3 2 1 37 37 H 0.97000 * 120.00417 * 359.72844 * 8 6 5 38 38 H 1.09005 * 109.58525 * 294.37267 * 11 9 8 39 39 H 1.08998 * 109.58720 * 54.79727 * 11 9 8 40 40 H 0.96995 * 120.00547 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.58404 * 293.82375 * 21 12 11 42 42 H 1.08999 * 109.70383 * 173.47003 * 21 12 11 43 43 H 1.08998 * 109.49741 * 185.41259 * 22 21 12 44 44 H 1.09003 * 109.49598 * 65.31450 * 22 21 12 45 45 H 1.08993 * 109.47385 * 60.00357 * 25 23 9 46 46 H 1.09008 * 109.46761 * 179.97438 * 25 23 9 47 47 H 1.09003 * 109.47271 * 299.99575 * 25 23 9 48 48 H 1.07996 * 125.99274 * 179.77065 * 26 5 4 49 49 H 1.09000 * 109.47282 * 89.99725 * 29 28 4 50 50 H 1.08996 * 109.46990 * 209.99692 * 29 28 4 51 51 H 1.09000 * 109.46947 * 329.99764 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3636 1.4426 1.1136 6 6 3.9247 1.4443 2.5211 7 8 2.7384 1.4461 2.7881 8 7 4.8385 1.4498 3.5119 9 6 4.4024 1.4576 4.9105 10 1 3.4899 2.0465 5.0037 11 6 4.1340 0.0212 5.3703 12 7 3.8245 0.0345 6.8065 13 6 2.6771 -0.5450 7.2785 14 1 1.8075 -0.6175 6.6421 15 6 2.6315 -1.0392 8.5748 16 7 1.4716 -1.2174 9.1709 17 14 4.2164 -1.4513 9.4735 18 1 4.6544 -0.2764 10.2690 19 1 3.9858 -2.6047 10.3800 20 1 5.2690 -1.8007 8.4859 21 6 4.7694 0.6818 7.7268 22 6 5.0308 2.1108 7.2405 23 6 5.4985 2.0722 5.7839 24 1 6.4034 1.4691 5.7089 25 6 5.7936 3.4951 5.3053 26 6 5.6988 1.4470 0.6514 27 7 5.6743 1.4410 -0.6529 28 7 4.3421 1.4415 -1.0811 29 6 3.8911 1.4414 -2.4750 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 5.7848 1.4487 3.2989 38 1 3.2876 -0.3872 4.8179 39 1 5.0184 -0.5907 5.1927 40 1 1.4397 -1.5631 10.0766 41 1 5.7056 0.1238 7.7414 42 1 4.3448 0.7092 8.7303 43 1 5.8025 2.5700 7.8584 44 1 4.1122 2.6933 7.3122 45 1 4.8888 4.0984 5.3796 46 1 6.5740 3.9332 5.9276 47 1 6.1279 3.4677 4.2682 48 1 6.5844 1.4517 1.2695 49 1 3.7800 2.4691 -2.8210 50 1 4.6255 0.9269 -3.0945 51 1 2.9320 0.9283 -2.5465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967202708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:50 Heat of formation + Delta-G solvation = 23.234320 kcal Electronic energy + Delta-G solvation = -30077.102884 eV Core-core repulsion = 26205.208422 eV Total energy + Delta-G solvation = -3871.894462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.52216 -40.75149 -39.09960 -36.43867 -36.01870 -34.55890 -34.09162 -33.38516 -31.75945 -30.82342 -29.21932 -28.04366 -27.43273 -25.65363 -24.55966 -23.20195 -22.87995 -22.70495 -21.34805 -21.29771 -20.35922 -18.79214 -18.53147 -17.33339 -16.87917 -16.77536 -16.71569 -16.10754 -15.87273 -15.56096 -15.45653 -15.23327 -15.03837 -14.97174 -14.63269 -14.40480 -14.37257 -14.03019 -13.73540 -13.57253 -13.53586 -13.44518 -13.27003 -13.12683 -12.67734 -12.57807 -12.47849 -12.44443 -12.21926 -12.18614 -11.96806 -11.74803 -11.57732 -11.56139 -11.33032 -11.24305 -10.88714 -10.67168 -10.38079 -10.10633 -9.59265 -8.89743 -8.16594 -5.49958 0.49363 1.17795 1.30495 1.40205 1.42353 1.52746 2.30826 2.42147 2.51960 3.06741 3.36703 3.46679 3.55013 3.76775 3.87440 3.95375 4.03929 4.06504 4.09624 4.18175 4.35758 4.39112 4.39559 4.43700 4.53237 4.56136 4.58009 4.61239 4.65020 4.76533 4.85307 4.87948 4.89417 4.93144 4.99869 5.01304 5.11418 5.15577 5.18824 5.20631 5.31297 5.37527 5.41439 5.43397 5.49348 5.65847 5.85795 5.88169 6.11684 6.51058 6.75716 6.91055 7.44268 7.61447 7.99411 9.03916 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.003276 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.000517 B = 8546.102245 C = 9826.864706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.061 4.061 4 C 0.157 3.843 5 C -0.317 4.317 6 C 0.588 3.412 7 O -0.584 6.584 8 N -0.703 5.703 9 C 0.152 3.848 10 H 0.053 0.947 11 C 0.146 3.854 12 N -0.617 5.617 13 C -0.253 4.253 14 H 0.036 0.964 15 C -0.037 4.037 16 N -0.960 5.960 17 Si 0.957 3.043 18 H -0.267 1.267 19 H -0.311 1.311 20 H -0.257 1.257 21 C 0.114 3.886 22 C -0.120 4.120 23 C -0.084 4.084 24 H 0.093 0.907 25 C -0.135 4.135 26 C 0.089 3.911 27 N -0.319 5.319 28 N -0.359 5.359 29 C 0.083 3.917 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.412 0.588 38 H 0.029 0.971 39 H 0.040 0.960 40 H 0.263 0.737 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.039 0.961 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.219 0.781 49 H 0.096 0.904 50 H 0.103 0.897 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.336 9.275 -23.804 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.100 4.100 4 C 0.023 3.977 5 C -0.331 4.331 6 C 0.377 3.623 7 O -0.465 6.465 8 N -0.354 5.354 9 C 0.045 3.955 10 H 0.071 0.929 11 C 0.020 3.980 12 N -0.341 5.341 13 C -0.383 4.383 14 H 0.053 0.947 15 C -0.231 4.231 16 N -0.606 5.606 17 Si 0.785 3.215 18 H -0.193 1.193 19 H -0.240 1.240 20 H -0.181 1.181 21 C -0.010 4.010 22 C -0.160 4.160 23 C -0.103 4.103 24 H 0.111 0.889 25 C -0.193 4.193 26 C -0.098 4.098 27 N -0.138 5.138 28 N -0.138 5.138 29 C -0.056 4.056 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.249 0.751 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.235 0.765 49 H 0.114 0.886 50 H 0.122 0.878 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.122 9.228 -24.760 28.669 hybrid contribution -0.264 -0.666 1.628 1.779 sum 10.858 8.562 -23.132 26.950 Atomic orbital electron populations 1.21724 0.94197 1.02270 1.02310 1.21321 0.97015 0.94639 1.01495 1.20524 0.85126 0.99271 1.05080 1.21717 0.95173 0.94169 0.86621 1.20014 0.94208 1.26266 0.92661 1.17577 0.85154 0.74874 0.84648 1.90763 1.18372 1.52535 1.84823 1.45549 1.09962 1.75184 1.04719 1.21192 0.97837 0.96369 0.80104 0.92919 1.21283 0.97965 0.95381 0.83419 1.44360 1.22656 1.64451 1.02678 1.18775 0.89232 1.32427 0.97879 0.94654 1.25973 0.99880 0.99229 0.98044 1.69994 1.26519 1.50228 1.13849 0.85756 0.80730 0.77021 0.78006 1.19287 1.24006 1.18149 1.21537 0.92414 0.93620 0.93433 1.21997 1.01371 0.96269 0.96323 1.21270 0.97290 0.98202 0.93522 0.88855 1.21765 1.01481 0.94093 1.01935 1.24428 0.97326 0.96087 0.91981 1.77120 0.97001 1.26091 1.13583 1.48648 1.03391 1.54342 1.07399 1.22379 1.02603 1.05413 0.75244 0.90280 0.92250 0.94001 0.90611 0.94542 0.89708 0.87537 0.75050 0.95200 0.94196 0.92846 0.93888 0.93208 0.88556 0.93420 0.94225 0.90557 0.91199 0.76498 0.88596 0.87841 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.07 16 2 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 3 C -0.06 -1.25 4.67 29.85 0.14 -1.12 16 4 C 0.16 3.56 6.26 42.14 0.26 3.82 16 5 C -0.32 -8.04 6.13 -20.15 -0.12 -8.16 16 6 C 0.59 18.49 7.78 86.67 0.67 19.17 16 7 O -0.58 -23.67 14.50 -4.01 -0.06 -23.72 16 8 N -0.70 -18.86 4.36 -445.42 -1.94 -20.80 16 9 C 0.15 5.14 2.07 45.07 0.09 5.24 16 10 H 0.05 2.21 7.58 -2.39 -0.02 2.20 16 11 C 0.15 6.21 6.09 86.37 0.53 6.73 16 12 N -0.62 -30.65 2.77 -699.07 -1.94 -32.58 16 13 C -0.25 -15.46 10.04 84.03 0.84 -14.62 16 14 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 15 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16 16 N -0.96 -62.90 13.97 21.65 0.30 -62.60 16 17 Si 0.96 47.44 24.35 68.60 1.67 49.11 16 18 H -0.27 -12.19 6.62 99.48 0.66 -11.53 16 19 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 20 H -0.26 -12.04 6.63 99.48 0.66 -11.38 16 21 C 0.11 4.79 4.20 86.36 0.36 5.15 16 22 C -0.12 -3.87 5.36 30.67 0.16 -3.70 16 23 C -0.08 -2.23 2.27 -10.77 -0.02 -2.26 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 C -0.14 -2.78 9.02 71.98 0.65 -2.13 16 26 C 0.09 1.78 11.50 85.65 0.99 2.76 16 27 N -0.32 -6.80 12.50 -56.28 -0.70 -7.51 16 28 N -0.36 -6.69 3.98 -354.31 -1.41 -8.10 16 29 C 0.08 0.72 11.06 127.77 1.41 2.13 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 2.31 6.50 -2.39 -0.02 2.29 16 36 H 0.11 1.40 7.70 -2.39 -0.02 1.38 16 37 H 0.41 7.65 7.26 -92.71 -0.67 6.98 16 38 H 0.03 1.46 7.93 -2.38 -0.02 1.44 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.04 1.67 7.08 -2.39 -0.02 1.65 16 42 H 0.05 2.32 4.50 -2.39 -0.01 2.31 16 43 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.07 1.19 7.36 -2.39 -0.02 1.17 16 48 H 0.22 2.60 7.50 -2.91 -0.02 2.58 16 49 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.11 0.52 7.62 -2.39 -0.02 0.50 16 Total: -1.00 -83.66 397.52 3.38 -80.29 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.15 Total: 18.83 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 7.31 Total: 7.09 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -5.69 Total: -131.60 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.72 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.67 Total: 49.11 kcal Total: -83.66 3.38 -80.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967202708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.520 kcal (2) G-P(sol) polarization free energy of solvation -83.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds