Wall clock time and date at job start Tue Mar 31 2020 19:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47363 * 2 1 4 4 C 1.50700 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.38039 * 126.29198 * 269.71186 * 4 3 2 6 6 C 1.47431 * 126.41558 * 0.02562 * 5 4 3 7 7 O 1.21597 * 120.00207 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99663 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99610 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.49730 * 35.00077 * 9 8 6 11 11 C 1.53192 * 109.49747 * 274.93617 * 9 8 6 12 12 N 1.46927 * 108.77477 * 185.41292 * 11 9 8 13 13 C 1.36934 * 120.63216 * 233.58334 * 12 11 9 14 14 H 1.08004 * 120.00010 * 151.83052 * 13 12 11 15 15 C 1.38813 * 120.00104 * 331.83027 * 13 12 11 16 16 N 1.31623 * 119.99756 * 343.08786 * 15 13 12 17 17 Si 1.86798 * 119.99994 * 163.08062 * 15 13 12 18 18 H 1.48502 * 109.47027 * 60.00666 * 17 15 13 19 19 H 1.48499 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47697 * 300.00363 * 17 15 13 21 21 C 1.46923 * 118.73768 * 53.60796 * 12 11 9 22 22 C 1.53194 * 108.77846 * 306.39227 * 21 12 11 23 23 C 1.53034 * 109.33880 * 54.61685 * 22 21 12 24 24 H 1.08998 * 109.43561 * 58.69342 * 23 22 21 25 25 C 1.52999 * 109.48879 * 178.65031 * 23 22 21 26 26 C 1.41292 * 107.17284 * 179.91343 * 5 4 3 27 27 N 1.30453 * 108.01972 * 0.35659 * 26 5 4 28 28 N 1.34258 * 126.28980 * 90.02590 * 4 3 2 29 29 C 1.46502 * 125.75156 * 359.94550 * 28 4 3 30 30 H 1.09003 * 109.46818 * 300.00236 * 1 2 3 31 31 H 1.08993 * 109.46611 * 59.99813 * 1 2 3 32 32 H 1.08995 * 109.47059 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47237 * 240.00054 * 2 1 3 34 34 H 1.09003 * 109.47038 * 119.99885 * 2 1 3 35 35 H 1.08991 * 109.46998 * 300.00347 * 3 2 1 36 36 H 1.09001 * 109.46649 * 60.00334 * 3 2 1 37 37 H 0.96991 * 120.00701 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.58466 * 305.20330 * 11 9 8 39 39 H 1.08996 * 109.59052 * 65.62672 * 11 9 8 40 40 H 0.96999 * 119.99375 * 179.97438 * 16 15 13 41 41 H 1.09010 * 109.58853 * 66.17630 * 21 12 11 42 42 H 1.08998 * 109.59134 * 186.46227 * 21 12 11 43 43 H 1.09002 * 109.50084 * 174.58683 * 22 21 12 44 44 H 1.08997 * 109.49292 * 294.65502 * 22 21 12 45 45 H 1.08997 * 109.47435 * 180.08470 * 25 23 22 46 46 H 1.09003 * 109.46967 * 300.08901 * 25 23 22 47 47 H 1.09003 * 109.46826 * 60.08150 * 25 23 22 48 48 H 1.07992 * 125.99164 * 180.12109 * 26 5 4 49 49 H 1.09003 * 109.47285 * 90.00067 * 29 28 4 50 50 H 1.09004 * 109.46493 * 209.99489 * 29 28 4 51 51 H 1.09000 * 109.47151 * 329.99445 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3637 1.4482 1.1136 6 6 3.9248 1.4549 2.5210 7 8 2.7385 1.4564 2.7881 8 7 4.8386 1.4606 3.5118 9 6 4.4026 1.4679 4.9104 10 1 3.4910 0.8787 5.0103 11 6 4.1312 2.9089 5.3538 12 7 3.8218 2.9114 6.7901 13 6 2.6736 3.4947 7.2555 14 1 2.2150 3.1344 8.1646 15 6 2.0991 4.5490 6.5590 16 7 2.8027 5.2056 5.6611 17 14 0.3274 5.0358 6.8957 18 1 0.1839 5.4271 8.3211 19 1 -0.0444 6.1824 6.0284 20 1 -0.5658 3.8854 6.6060 21 6 4.7680 2.2765 7.7177 22 6 5.0323 0.8426 7.2477 23 6 5.4996 0.8648 5.7907 24 1 6.4036 1.4684 5.7089 25 6 5.7969 -0.5629 5.3281 26 6 5.6988 1.4437 0.6514 27 7 5.6744 1.4435 -0.6529 28 7 4.3422 1.4427 -1.0812 29 6 3.8910 1.4420 -2.4750 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 5.7849 1.4599 3.2989 38 1 5.0143 3.5205 5.1692 39 1 3.2840 3.3093 4.7969 40 1 2.4011 5.9421 5.1741 41 1 5.7032 2.8366 7.7258 42 1 4.3421 2.2618 8.7209 43 1 5.8049 0.3921 7.8708 44 1 4.1151 0.2591 7.3267 45 1 6.1311 -0.5467 4.2908 46 1 6.5782 -0.9927 5.9550 47 1 4.8929 -1.1667 5.4092 48 1 6.5844 1.4444 1.2695 49 1 3.7784 2.4696 -2.8210 50 1 4.6264 0.9286 -3.0946 51 1 2.9328 0.9274 -2.5465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967202710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:01 Heat of formation + Delta-G solvation = 42.196143 kcal Electronic energy + Delta-G solvation = -30373.875099 eV Core-core repulsion = 26502.802883 eV Total energy + Delta-G solvation = -3871.072215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.47039 -39.12836 -37.33162 -35.34319 -34.18432 -33.38767 -32.87384 -30.91224 -30.64777 -29.00666 -27.47504 -26.80520 -26.54086 -24.01238 -22.96102 -21.82433 -21.67617 -20.98662 -20.10837 -19.67738 -18.97996 -17.35453 -16.71486 -15.86248 -15.75928 -15.32447 -14.92872 -14.77094 -14.56743 -14.07651 -13.82382 -13.66690 -13.59699 -13.41947 -13.33813 -13.05464 -12.93809 -12.81428 -12.62961 -12.32495 -12.26386 -11.90756 -11.58201 -11.53252 -11.49725 -11.34291 -10.97874 -10.84205 -10.65184 -10.60914 -10.52279 -10.38068 -10.11834 -9.88232 -9.81813 -9.44730 -9.41352 -9.20564 -8.60447 -8.35950 -8.28051 -6.57810 -5.68999 -3.12508 1.59187 2.27357 2.28368 3.46214 3.52031 3.54533 3.75318 3.91979 4.36284 4.43929 4.59721 4.79973 4.86620 4.93425 5.00079 5.12850 5.21498 5.25454 5.27890 5.33622 5.45505 5.47117 5.51346 5.61084 5.66406 5.67459 5.79220 5.87272 5.99528 6.06801 6.09194 6.11342 6.19390 6.24066 6.27278 6.32153 6.42375 6.48525 6.53785 6.63848 6.81201 6.81570 6.84830 7.03731 7.12243 7.40384 7.53341 7.81692 7.90382 8.14340 8.55322 8.87682 9.30032 9.94009 10.49272 11.38768 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.004020 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.135584 B = 6964.266095 C = 8377.007526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.067 4.067 4 C 0.157 3.843 5 C -0.285 4.285 6 C 0.590 3.410 7 O -0.538 6.538 8 N -0.715 5.715 9 C 0.128 3.872 10 H 0.082 0.918 11 C 0.167 3.833 12 N -0.588 5.588 13 C -0.256 4.256 14 H 0.065 0.935 15 C 0.008 3.992 16 N -0.899 5.899 17 Si 0.901 3.099 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.142 3.858 22 C -0.125 4.125 23 C -0.092 4.092 24 H 0.066 0.934 25 C -0.143 4.143 26 C 0.082 3.918 27 N -0.304 5.304 28 N -0.366 5.366 29 C 0.097 3.903 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.389 0.611 38 H 0.016 0.984 39 H 0.095 0.905 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.188 0.812 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -11.337 -14.106 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.106 4.106 4 C 0.025 3.975 5 C -0.300 4.300 6 C 0.377 3.623 7 O -0.416 6.416 8 N -0.365 5.365 9 C 0.023 3.977 10 H 0.100 0.900 11 C 0.040 3.960 12 N -0.311 5.311 13 C -0.386 4.386 14 H 0.082 0.918 15 C -0.191 4.191 16 N -0.542 5.542 17 Si 0.731 3.269 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.209 1.209 21 C 0.016 3.984 22 C -0.165 4.165 23 C -0.111 4.111 24 H 0.084 0.916 25 C -0.201 4.201 26 C -0.106 4.106 27 N -0.123 5.123 28 N -0.146 5.146 29 C -0.044 4.044 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.222 0.778 38 H 0.034 0.966 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.205 0.795 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.994 -11.166 -15.215 19.291 hybrid contribution -0.648 0.413 0.596 0.972 sum 3.347 -10.753 -14.619 18.454 Atomic orbital electron populations 1.21742 0.95032 1.01745 1.02230 1.21371 0.96288 0.94996 1.02126 1.20576 0.85789 0.99104 1.05109 1.21506 0.94578 0.95184 0.86203 1.20172 0.92617 1.23083 0.94104 1.17103 0.85769 0.76117 0.83318 1.90760 1.16334 1.50552 1.83970 1.45798 1.08734 1.75411 1.06536 1.21930 0.96721 1.01407 0.77680 0.90029 1.21097 1.00535 0.89239 0.85083 1.43955 1.21286 1.65227 1.00640 1.19094 0.99735 1.10166 1.09603 0.91759 1.25017 0.98661 0.95693 0.99744 1.70013 1.34848 1.21376 1.28005 0.86397 0.85438 0.77684 0.77416 1.20968 1.21696 1.20883 1.20953 0.93031 0.90533 0.93890 1.22060 1.00210 0.99921 0.94273 1.21301 0.98256 0.95566 0.96024 0.91576 1.21841 1.00993 0.96876 1.00357 1.23989 0.97338 0.97335 0.91924 1.77123 0.96105 1.25746 1.13330 1.48278 1.04065 1.56073 1.06185 1.21917 1.01159 1.03692 0.77629 0.91762 0.92990 0.92649 0.92918 0.90880 0.91021 0.86530 0.77797 0.96640 0.88711 0.93676 0.96523 0.92712 0.92737 0.92156 0.93171 0.93279 0.93000 0.79549 0.90437 0.89036 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.11 -1.22 5.92 -26.73 -0.16 -1.38 16 3 C -0.07 -0.83 4.68 -27.88 -0.13 -0.96 16 4 C 0.16 2.17 6.26 -81.60 -0.51 1.66 16 5 C -0.29 -4.39 6.13 -105.07 -0.64 -5.03 16 6 C 0.59 10.73 7.78 -12.51 -0.10 10.64 16 7 O -0.54 -11.71 14.49 5.28 0.08 -11.63 16 8 N -0.72 -11.95 4.36 -54.76 -0.24 -12.18 16 9 C 0.13 2.50 2.06 -67.81 -0.14 2.36 16 10 H 0.08 1.82 7.58 -51.93 -0.39 1.43 16 11 C 0.17 4.11 4.88 -3.71 -0.02 4.09 16 12 N -0.59 -15.06 2.99 -172.32 -0.52 -15.57 16 13 C -0.26 -7.26 9.58 -15.06 -0.14 -7.40 16 14 H 0.06 1.78 7.89 -52.48 -0.41 1.36 16 15 C 0.01 0.23 4.92 -17.43 -0.09 0.14 16 16 N -0.90 -27.04 11.20 55.49 0.62 -26.42 16 17 Si 0.90 22.62 29.59 -169.99 -5.03 17.59 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 22 C -0.12 -2.13 5.36 -26.61 -0.14 -2.27 16 23 C -0.09 -1.49 2.27 -90.58 -0.21 -1.70 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 C -0.14 -1.90 9.02 37.16 0.34 -1.56 16 26 C 0.08 1.08 11.50 -16.98 -0.20 0.88 16 27 N -0.30 -4.15 12.50 30.86 0.39 -3.76 16 28 N -0.37 -4.48 3.98 -63.34 -0.25 -4.73 16 29 C 0.10 0.72 11.06 59.85 0.66 1.38 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 36 H 0.12 1.82 6.48 -51.93 -0.34 1.48 16 37 H 0.39 5.24 7.26 -40.82 -0.30 4.95 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 2.75 6.06 -51.93 -0.31 2.43 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.19 1.84 7.50 -52.49 -0.39 1.45 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.09 0.49 7.62 -51.93 -0.40 0.09 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -34.55 403.96 -8.79 -43.33 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.79 Total: 4.60 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.13 Total: 2.68 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.00 Total: -62.66 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.55 -8.79 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967202710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.531 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds