Wall clock time and date at job start Tue Mar 31 2020 19:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47363 * 2 1 4 4 C 1.50700 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.38039 * 126.29198 * 269.71186 * 4 3 2 6 6 C 1.47431 * 126.41558 * 0.02562 * 5 4 3 7 7 O 1.21597 * 120.00207 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99663 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99610 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.49730 * 35.00077 * 9 8 6 11 11 C 1.53192 * 109.49747 * 274.93617 * 9 8 6 12 12 N 1.46927 * 108.77477 * 185.41292 * 11 9 8 13 13 C 1.36934 * 120.63216 * 233.58334 * 12 11 9 14 14 H 1.08004 * 120.00010 * 151.83052 * 13 12 11 15 15 C 1.38813 * 120.00104 * 331.83027 * 13 12 11 16 16 N 1.31623 * 119.99756 * 343.08786 * 15 13 12 17 17 Si 1.86798 * 119.99994 * 163.08062 * 15 13 12 18 18 H 1.48502 * 109.47027 * 60.00666 * 17 15 13 19 19 H 1.48499 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47697 * 300.00363 * 17 15 13 21 21 C 1.46923 * 118.73768 * 53.60796 * 12 11 9 22 22 C 1.53194 * 108.77846 * 306.39227 * 21 12 11 23 23 C 1.53034 * 109.33880 * 54.61685 * 22 21 12 24 24 H 1.08998 * 109.43561 * 58.69342 * 23 22 21 25 25 C 1.52999 * 109.48879 * 178.65031 * 23 22 21 26 26 C 1.41292 * 107.17284 * 179.91343 * 5 4 3 27 27 N 1.30453 * 108.01972 * 0.35659 * 26 5 4 28 28 N 1.34258 * 126.28980 * 90.02590 * 4 3 2 29 29 C 1.46502 * 125.75156 * 359.94550 * 28 4 3 30 30 H 1.09003 * 109.46818 * 300.00236 * 1 2 3 31 31 H 1.08993 * 109.46611 * 59.99813 * 1 2 3 32 32 H 1.08995 * 109.47059 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47237 * 240.00054 * 2 1 3 34 34 H 1.09003 * 109.47038 * 119.99885 * 2 1 3 35 35 H 1.08991 * 109.46998 * 300.00347 * 3 2 1 36 36 H 1.09001 * 109.46649 * 60.00334 * 3 2 1 37 37 H 0.96991 * 120.00701 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.58466 * 305.20330 * 11 9 8 39 39 H 1.08996 * 109.59052 * 65.62672 * 11 9 8 40 40 H 0.96999 * 119.99375 * 179.97438 * 16 15 13 41 41 H 1.09010 * 109.58853 * 66.17630 * 21 12 11 42 42 H 1.08998 * 109.59134 * 186.46227 * 21 12 11 43 43 H 1.09002 * 109.50084 * 174.58683 * 22 21 12 44 44 H 1.08997 * 109.49292 * 294.65502 * 22 21 12 45 45 H 1.08997 * 109.47435 * 180.08470 * 25 23 22 46 46 H 1.09003 * 109.46967 * 300.08901 * 25 23 22 47 47 H 1.09003 * 109.46826 * 60.08150 * 25 23 22 48 48 H 1.07992 * 125.99164 * 180.12109 * 26 5 4 49 49 H 1.09003 * 109.47285 * 90.00067 * 29 28 4 50 50 H 1.09004 * 109.46493 * 209.99489 * 29 28 4 51 51 H 1.09000 * 109.47151 * 329.99445 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3637 1.4482 1.1136 6 6 3.9248 1.4549 2.5210 7 8 2.7385 1.4564 2.7881 8 7 4.8386 1.4606 3.5118 9 6 4.4026 1.4679 4.9104 10 1 3.4910 0.8787 5.0103 11 6 4.1312 2.9089 5.3538 12 7 3.8218 2.9114 6.7901 13 6 2.6736 3.4947 7.2555 14 1 2.2150 3.1344 8.1646 15 6 2.0991 4.5490 6.5590 16 7 2.8027 5.2056 5.6611 17 14 0.3274 5.0358 6.8957 18 1 0.1839 5.4271 8.3211 19 1 -0.0444 6.1824 6.0284 20 1 -0.5658 3.8854 6.6060 21 6 4.7680 2.2765 7.7177 22 6 5.0323 0.8426 7.2477 23 6 5.4996 0.8648 5.7907 24 1 6.4036 1.4684 5.7089 25 6 5.7969 -0.5629 5.3281 26 6 5.6988 1.4437 0.6514 27 7 5.6744 1.4435 -0.6529 28 7 4.3422 1.4427 -1.0812 29 6 3.8910 1.4420 -2.4750 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 5.7849 1.4599 3.2989 38 1 5.0143 3.5205 5.1692 39 1 3.2840 3.3093 4.7969 40 1 2.4011 5.9421 5.1741 41 1 5.7032 2.8366 7.7258 42 1 4.3421 2.2618 8.7209 43 1 5.8049 0.3921 7.8708 44 1 4.1151 0.2591 7.3267 45 1 6.1311 -0.5467 4.2908 46 1 6.5782 -0.9927 5.9550 47 1 4.8929 -1.1667 5.4092 48 1 6.5844 1.4444 1.2695 49 1 3.7784 2.4696 -2.8210 50 1 4.6264 0.9286 -3.0946 51 1 2.9328 0.9274 -2.5465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967202710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:00 Heat of formation + Delta-G solvation = 19.712012 kcal Electronic energy + Delta-G solvation = -30374.850084 eV Core-core repulsion = 26502.802883 eV Total energy + Delta-G solvation = -3872.047200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.51995 -40.62817 -38.91555 -36.36817 -35.91166 -34.63282 -34.13659 -32.78864 -31.71859 -30.53702 -29.00977 -27.97033 -27.44063 -25.85339 -24.36736 -23.07829 -22.69856 -22.60407 -21.28908 -21.18694 -20.30043 -18.75025 -18.50904 -17.15549 -16.79233 -16.74772 -16.57961 -15.89565 -15.69529 -15.59209 -15.44633 -15.20079 -14.90646 -14.83017 -14.54668 -14.28750 -14.12364 -14.00247 -13.55291 -13.53813 -13.43110 -13.22774 -13.15035 -13.02475 -12.69321 -12.56087 -12.45520 -12.32241 -12.22237 -12.14170 -11.97582 -11.88141 -11.60350 -11.56381 -11.38024 -11.15304 -10.70365 -10.52548 -10.38267 -10.02488 -9.57008 -8.65964 -7.87057 -5.33367 0.49741 1.16892 1.39846 1.41193 1.46795 1.51574 2.35895 2.52224 2.57320 3.29006 3.45511 3.50704 3.79452 3.86013 3.87668 4.03914 4.06071 4.10337 4.17885 4.21945 4.37847 4.39724 4.50636 4.53779 4.57348 4.63375 4.64981 4.71290 4.76272 4.77310 4.88874 4.94887 4.96003 5.02236 5.14526 5.15907 5.21413 5.26015 5.30352 5.34277 5.37951 5.42400 5.49676 5.55803 5.58551 5.64361 5.85860 5.88314 6.38476 6.49841 6.79917 7.14003 7.49049 7.87515 8.36826 9.17365 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.004020 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.135584 B = 6964.266095 C = 8377.007526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.064 4.064 4 C 0.157 3.843 5 C -0.317 4.317 6 C 0.586 3.414 7 O -0.584 6.584 8 N -0.704 5.704 9 C 0.146 3.854 10 H 0.049 0.951 11 C 0.181 3.819 12 N -0.609 5.609 13 C -0.266 4.266 14 H 0.067 0.933 15 C -0.048 4.048 16 N -0.930 5.930 17 Si 0.961 3.039 18 H -0.267 1.267 19 H -0.294 1.294 20 H -0.284 1.284 21 C 0.136 3.864 22 C -0.115 4.115 23 C -0.085 4.085 24 H 0.078 0.922 25 C -0.134 4.134 26 C 0.087 3.913 27 N -0.316 5.316 28 N -0.359 5.359 29 C 0.083 3.917 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.408 0.592 38 H -0.004 1.004 39 H 0.043 0.957 40 H 0.246 0.754 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.041 0.959 48 H 0.216 0.784 49 H 0.091 0.909 50 H 0.106 0.894 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.535 -13.172 -15.470 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.103 4.103 4 C 0.023 3.977 5 C -0.332 4.332 6 C 0.374 3.626 7 O -0.466 6.466 8 N -0.355 5.355 9 C 0.039 3.961 10 H 0.067 0.933 11 C 0.054 3.946 12 N -0.333 5.333 13 C -0.397 4.397 14 H 0.085 0.915 15 C -0.243 4.243 16 N -0.576 5.576 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.220 1.220 20 H -0.210 1.210 21 C 0.011 3.989 22 C -0.154 4.154 23 C -0.104 4.104 24 H 0.097 0.903 25 C -0.191 4.191 26 C -0.100 4.100 27 N -0.136 5.136 28 N -0.138 5.138 29 C -0.056 4.056 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.244 0.756 38 H 0.014 0.986 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.232 0.768 49 H 0.110 0.890 50 H 0.125 0.875 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.353 -13.028 -16.591 21.764 hybrid contribution -1.043 0.999 0.976 1.744 sum 4.310 -12.029 -15.614 20.176 Atomic orbital electron populations 1.21727 0.94155 1.02487 1.02109 1.21309 0.96989 0.93936 1.01816 1.20542 0.85173 0.99911 1.04666 1.21684 0.95169 0.94281 0.86584 1.20066 0.94326 1.25992 0.92779 1.17603 0.85232 0.75002 0.84721 1.90738 1.18339 1.52634 1.84843 1.45590 1.09656 1.74950 1.05263 1.21421 0.97315 0.97489 0.79834 0.93300 1.20779 0.97319 0.91944 0.84574 1.44240 1.21796 1.65568 1.01718 1.19467 1.00922 1.09792 1.09492 0.91516 1.25772 1.02286 0.96180 1.00101 1.70177 1.36203 1.21939 1.29290 0.85441 0.80871 0.76944 0.77881 1.19256 1.22008 1.21045 1.21170 0.91958 0.92598 0.93177 1.21958 1.01174 0.96911 0.95396 1.21265 0.96890 0.97700 0.94591 0.90325 1.21755 1.01485 0.94153 1.01703 1.24380 0.97272 0.96273 0.92051 1.77090 0.97025 1.26121 1.13352 1.48636 1.03319 1.54422 1.07374 1.22389 1.02764 1.05276 0.75165 0.94280 0.90682 0.91483 0.90259 0.93988 0.87851 0.90471 0.75599 0.98609 0.93864 0.94463 0.96185 0.92687 0.88616 0.93186 0.91878 0.90417 0.93971 0.76780 0.89033 0.87514 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.15 16 2 C -0.10 -2.24 5.92 30.60 0.18 -2.06 16 3 C -0.06 -1.59 4.68 29.85 0.14 -1.45 16 4 C 0.16 4.28 6.26 42.14 0.26 4.54 16 5 C -0.32 -9.85 6.13 -20.15 -0.12 -9.97 16 6 C 0.59 22.35 7.78 86.66 0.67 23.02 16 7 O -0.58 -27.47 14.49 -4.02 -0.06 -27.53 16 8 N -0.70 -24.03 4.36 -445.42 -1.94 -25.98 16 9 C 0.15 5.86 2.06 45.07 0.09 5.96 16 10 H 0.05 2.30 7.58 -2.39 -0.02 2.29 16 11 C 0.18 9.36 4.88 86.36 0.42 9.78 16 12 N -0.61 -32.27 2.99 -699.09 -2.09 -34.36 16 13 C -0.27 -15.60 9.58 84.03 0.81 -14.80 16 14 H 0.07 3.78 7.89 -2.91 -0.02 3.75 16 15 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 16 N -0.93 -58.88 11.20 21.65 0.24 -58.64 16 17 Si 0.96 48.19 29.59 68.60 2.03 50.22 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 20 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 21 C 0.14 5.66 6.52 86.36 0.56 6.22 16 22 C -0.12 -3.72 5.36 30.67 0.16 -3.55 16 23 C -0.09 -2.62 2.27 -10.77 -0.02 -2.64 16 24 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 25 C -0.13 -3.14 9.02 71.98 0.65 -2.49 16 26 C 0.09 2.20 11.50 85.65 0.99 3.18 16 27 N -0.32 -8.06 12.50 -56.27 -0.70 -8.77 16 28 N -0.36 -8.08 3.98 -354.30 -1.41 -9.49 16 29 C 0.08 0.98 11.06 127.77 1.41 2.39 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.84 7.70 -2.39 -0.02 1.82 16 36 H 0.08 2.60 6.48 -2.39 -0.02 2.58 16 37 H 0.41 10.66 7.26 -92.72 -0.67 9.98 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.04 2.68 6.06 -2.39 -0.01 2.67 16 40 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 43 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.33 7.36 -2.39 -0.02 1.31 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 48 H 0.22 3.78 7.50 -2.91 -0.02 3.75 16 49 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 51 H 0.11 0.80 7.62 -2.39 -0.02 0.78 16 Total: -1.00 -81.66 403.96 3.64 -78.02 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.24 Total: 23.00 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 7.34 Total: 13.53 kcal Atomic # 7 Polarization: -131.33 SS G_CDS: -5.91 Total: -137.23 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.06 Total: -27.53 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -81.66 3.64 -78.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967202710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.728 kcal (2) G-P(sol) polarization free energy of solvation -81.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds