Wall clock time and date at job start Tue Mar 31 2020 17:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46550 * 2 1 4 4 N 1.30451 * 125.98771 * 270.17396 * 3 2 1 5 5 N 1.39937 * 108.89270 * 180.29591 * 4 3 2 6 6 C 1.46504 * 125.75376 * 179.74866 * 5 4 3 7 7 C 1.34253 * 108.49628 * 359.71664 * 5 4 3 8 8 C 1.38048 * 107.41612 * 359.97438 * 7 5 4 9 9 C 1.47427 * 126.41472 * 179.97438 * 8 7 5 10 10 O 1.21605 * 119.99732 * 180.02562 * 9 8 7 11 11 N 1.34769 * 120.00313 * 0.03115 * 9 8 7 12 12 C 1.46500 * 120.00467 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47454 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.45218 * 64.94274 * 13 12 11 15 15 C 1.54872 * 109.44941 * 184.86842 * 13 12 11 16 16 C 1.47091 * 110.32107 * 191.29114 * 15 13 12 17 17 C 1.52569 * 114.32569 * 297.19026 * 16 15 13 18 18 C 1.50881 * 109.35251 * 85.03001 * 17 16 15 19 19 C 1.53943 * 110.09075 * 268.11225 * 18 17 16 20 20 N 1.44579 * 109.44461 * 304.99584 * 13 12 11 21 21 C 1.36941 * 118.64556 * 329.26500 * 20 13 12 22 22 H 1.07997 * 120.00127 * 331.68254 * 21 20 13 23 23 C 1.38807 * 119.99895 * 151.67483 * 21 20 13 24 24 N 1.31617 * 120.00303 * 344.50240 * 23 21 20 25 25 Si 1.86806 * 119.99920 * 164.49461 * 23 21 20 26 26 H 1.48497 * 109.47029 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46840 * 120.00299 * 25 23 21 28 28 H 1.48500 * 109.47168 * 240.00288 * 25 23 21 29 29 H 1.09001 * 109.47390 * 60.00140 * 1 2 3 30 30 H 1.09004 * 109.46706 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47491 * 299.99483 * 1 2 3 32 32 H 1.08999 * 109.46989 * 240.00639 * 2 1 3 33 33 H 1.08994 * 109.47667 * 120.00051 * 2 1 3 34 34 H 1.08996 * 109.47181 * 269.96548 * 6 5 4 35 35 H 1.09004 * 109.46636 * 29.96479 * 6 5 4 36 36 H 1.08998 * 109.47182 * 149.95901 * 6 5 4 37 37 H 1.08002 * 126.29689 * 179.97438 * 7 5 4 38 38 H 0.97006 * 120.00077 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.46939 * 300.00058 * 12 11 9 40 40 H 1.09000 * 109.47423 * 59.99559 * 12 11 9 41 41 H 1.09001 * 109.32415 * 311.54829 * 15 13 12 42 42 H 1.08999 * 109.32858 * 71.02399 * 15 13 12 43 43 H 1.08999 * 108.51296 * 175.93521 * 16 15 13 44 44 H 1.08994 * 108.38864 * 58.35069 * 16 15 13 45 45 H 1.08994 * 109.49585 * 325.05769 * 17 16 15 46 46 H 1.09007 * 109.50773 * 204.99949 * 17 16 15 47 47 H 1.09000 * 109.37011 * 147.92004 * 18 17 16 48 48 H 1.09000 * 109.26256 * 28.23618 * 18 17 16 49 49 H 1.09007 * 108.94547 * 279.87266 * 19 18 17 50 50 H 1.09000 * 108.87756 * 161.19937 * 19 18 17 51 51 H 0.97003 * 120.00152 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2846 2.1447 -1.0555 5 7 2.7379 3.4031 -0.6442 6 6 3.1315 4.5024 -1.5290 7 6 2.7508 3.4334 0.6979 8 6 2.3084 2.2039 1.1432 9 6 2.1596 1.7838 2.5485 10 8 1.7577 0.6661 2.8097 11 7 2.4688 2.6383 3.5437 12 6 2.3204 2.2211 4.9402 13 6 2.7347 3.3694 5.8624 14 1 2.0454 4.2040 5.7350 15 6 2.6953 2.8888 7.3341 16 6 2.8250 4.0333 8.2489 17 6 4.1480 4.7842 8.1324 18 6 4.0490 5.8023 7.0232 19 6 4.5344 5.1887 5.6974 20 7 4.0748 3.7963 5.5273 21 6 4.9539 2.8708 5.0314 22 1 4.8529 1.8304 5.3029 23 6 5.9746 3.2699 4.1797 24 7 5.9283 4.4537 3.6063 25 14 7.4143 2.1269 3.8473 26 1 7.2295 0.8644 4.6070 27 1 7.4814 1.8249 2.3949 28 1 8.6760 2.7826 4.2755 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.1962 4.4277 -1.7499 35 1 2.5629 4.4432 -2.4571 36 1 2.9281 5.4543 -1.0384 37 1 3.0518 4.2665 1.3158 38 1 2.7897 3.5297 3.3354 39 1 1.2801 1.9585 5.1323 40 1 2.9547 1.3552 5.1301 41 1 1.7491 2.3816 7.5227 42 1 3.5158 2.1927 7.5084 43 1 2.7210 3.6721 9.2721 44 1 2.0123 4.7303 8.0449 45 1 4.9481 4.0788 7.9083 46 1 4.3629 5.2911 9.0732 47 1 4.6665 6.6661 7.2692 48 1 3.0113 6.1183 6.9167 49 1 5.6241 5.2066 5.6771 50 1 4.1554 5.7899 4.8709 51 1 6.6419 4.7328 3.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968905232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:15 Heat of formation + Delta-G solvation = 46.678937 kcal Electronic energy + Delta-G solvation = -30849.125128 eV Core-core repulsion = 26978.247301 eV Total energy + Delta-G solvation = -3870.877827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.08329 -38.78950 -37.76448 -34.69477 -34.15572 -33.41917 -31.96742 -31.38963 -30.71846 -29.90290 -27.14055 -26.52360 -25.54581 -23.57766 -23.42308 -22.38955 -21.56022 -19.92683 -19.55581 -19.22461 -18.99380 -17.35595 -16.13705 -15.58517 -15.56829 -15.41890 -14.79744 -14.59702 -14.33562 -14.21238 -13.96691 -13.88440 -13.58011 -13.34406 -13.10730 -12.86145 -12.71838 -12.62872 -12.39927 -12.06182 -11.92421 -11.77733 -11.43923 -11.26107 -11.20902 -11.08854 -10.87019 -10.85760 -10.57670 -10.44458 -10.20084 -10.03129 -9.98503 -9.71467 -9.58571 -9.52661 -9.11927 -9.04401 -8.44102 -8.38476 -7.96393 -6.71112 -5.85044 -3.28114 1.90295 2.54406 2.58997 3.34395 3.43902 3.47215 4.04851 4.22557 4.47432 4.55538 4.98523 5.06746 5.15147 5.20330 5.34053 5.37633 5.39656 5.43218 5.50220 5.64087 5.64644 5.65205 5.77727 5.87922 5.94511 5.98211 6.04062 6.10725 6.15983 6.18073 6.36121 6.39077 6.44428 6.47263 6.57388 6.64017 6.65733 6.71022 6.77242 6.83250 6.85004 7.00387 7.07394 7.11378 7.36054 7.41243 7.62619 7.82260 7.87382 8.41099 8.50148 9.11942 9.19255 9.83662 10.28644 11.21896 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.004357 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.312408 B = 6424.933608 C = 7242.568293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 C 0.131 3.869 4 N -0.312 5.312 5 N -0.368 5.368 6 C 0.101 3.899 7 C 0.111 3.889 8 C -0.279 4.279 9 C 0.590 3.410 10 O -0.565 6.565 11 N -0.690 5.690 12 C 0.132 3.868 13 C 0.173 3.827 14 H 0.043 0.957 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.143 4.143 19 C 0.182 3.818 20 N -0.583 5.583 21 C -0.242 4.242 22 H 0.064 0.936 23 C 0.013 3.987 24 N -0.905 5.905 25 Si 0.889 3.111 26 H -0.278 1.278 27 H -0.293 1.293 28 H -0.291 1.291 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.186 0.814 38 H 0.407 0.593 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.023 0.977 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 2.603 -3.031 8.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C -0.037 4.037 4 N -0.134 5.134 5 N -0.146 5.146 6 C -0.040 4.040 7 C -0.039 4.039 8 C -0.293 4.293 9 C 0.377 3.623 10 O -0.447 6.447 11 N -0.339 5.339 12 C 0.008 3.992 13 C 0.064 3.936 14 H 0.061 0.939 15 C -0.177 4.177 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.182 4.182 19 C 0.057 3.943 20 N -0.305 5.305 21 C -0.372 4.372 22 H 0.081 0.919 23 C -0.185 4.185 24 N -0.550 5.550 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.220 1.220 28 H -0.218 1.218 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.203 0.797 38 H 0.242 0.758 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.091 0.909 50 H 0.041 0.959 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.758 2.112 -4.325 9.130 hybrid contribution 1.362 0.169 0.583 1.491 sum -6.396 2.280 -3.742 7.754 Atomic orbital electron populations 1.21591 0.94360 1.01592 1.01784 1.20061 0.96192 0.88396 1.03789 1.22373 0.95635 0.96643 0.89002 1.77058 1.22662 0.90773 1.22864 1.48190 1.49927 1.11622 1.04877 1.21903 1.01568 0.86177 0.94381 1.23247 0.96366 0.99509 0.84811 1.20335 1.18827 0.95254 0.94928 1.17134 0.77209 0.84489 0.83480 1.90654 1.49120 1.20421 1.84464 1.45499 1.65423 1.17509 1.05428 1.21426 0.98708 0.98533 0.80579 1.20518 0.87946 0.93856 0.91262 0.93854 1.21369 1.00615 0.98017 0.97702 1.20288 0.97596 0.97728 0.98206 1.20946 0.98280 0.98349 0.96838 1.22070 0.99953 0.97734 0.98450 1.20976 0.99513 0.83427 0.90396 1.43736 1.06612 1.06585 1.73604 1.19077 1.06983 0.90336 1.20812 0.91872 1.24857 1.00212 0.96689 0.96750 1.70025 1.32967 1.20083 1.31916 0.86417 0.83213 0.80739 0.77634 1.20328 1.21991 1.21806 0.93327 0.92282 0.92116 0.91198 0.88043 0.90504 0.89385 0.89176 0.79685 0.75761 0.93294 0.91485 0.93289 0.91836 0.94118 0.93565 0.90779 0.94250 0.93313 0.93817 0.90947 0.95917 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.89 37.16 0.37 -1.47 16 2 C -0.05 -0.70 5.97 -27.88 -0.17 -0.87 16 3 C 0.13 2.33 6.52 -82.02 -0.53 1.80 16 4 N -0.31 -5.37 12.50 33.90 0.42 -4.95 16 5 N -0.37 -5.58 3.98 -67.60 -0.27 -5.85 16 6 C 0.10 1.02 11.44 59.85 0.68 1.70 16 7 C 0.11 1.83 10.99 -16.56 -0.18 1.64 16 8 C -0.28 -5.18 6.13 -105.07 -0.64 -5.83 16 9 C 0.59 11.93 7.81 -12.52 -0.10 11.84 16 10 O -0.57 -12.44 14.92 5.27 0.08 -12.37 16 11 N -0.69 -13.40 4.71 -61.38 -0.29 -13.69 16 12 C 0.13 2.51 4.52 -4.04 -0.02 2.49 16 13 C 0.17 3.15 2.19 -67.97 -0.15 3.01 16 14 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 15 C -0.14 -2.24 5.06 -28.58 -0.14 -2.38 16 16 C -0.10 -1.54 5.16 -29.79 -0.15 -1.69 16 17 C -0.11 -1.75 5.51 -28.02 -0.15 -1.91 16 18 C -0.14 -2.45 5.71 -27.30 -0.16 -2.60 16 19 C 0.18 3.76 4.66 -2.94 -0.01 3.75 16 20 N -0.58 -12.19 1.77 -164.46 -0.29 -12.48 16 21 C -0.24 -5.80 7.62 -15.06 -0.11 -5.92 16 22 H 0.06 1.61 6.74 -52.49 -0.35 1.26 16 23 C 0.01 0.33 4.86 -17.43 -0.08 0.24 16 24 N -0.90 -22.77 11.13 55.49 0.62 -22.15 16 25 Si 0.89 21.18 29.58 -169.99 -5.03 16.16 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.75 6.56 -51.93 -0.34 1.41 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.19 2.78 7.46 -52.49 -0.39 2.39 16 38 H 0.41 7.98 7.00 -40.82 -0.29 7.70 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.42 6.84 -51.93 -0.36 1.07 16 41 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 45 H 0.07 1.41 7.48 -51.93 -0.39 1.02 16 46 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 49 H 0.07 1.72 6.47 -51.93 -0.34 1.39 16 50 H 0.02 0.50 8.02 -51.93 -0.42 0.09 16 51 H 0.25 6.30 8.31 -40.82 -0.34 5.96 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -28.48 397.38 -9.01 -37.48 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.68 Total: 8.07 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.56 Total: 3.78 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.19 Total: -59.12 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.48 -9.01 -37.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968905232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.161 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds