Wall clock time and date at job start Tue Mar 31 2020 17:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46550 * 2 1 4 4 N 1.30451 * 125.98771 * 270.17396 * 3 2 1 5 5 N 1.39937 * 108.89270 * 180.29591 * 4 3 2 6 6 C 1.46504 * 125.75376 * 179.74866 * 5 4 3 7 7 C 1.34253 * 108.49628 * 359.71664 * 5 4 3 8 8 C 1.38048 * 107.41612 * 359.97438 * 7 5 4 9 9 C 1.47427 * 126.41472 * 179.97438 * 8 7 5 10 10 O 1.21605 * 119.99732 * 180.02562 * 9 8 7 11 11 N 1.34769 * 120.00313 * 0.03115 * 9 8 7 12 12 C 1.46500 * 120.00467 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47454 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.45218 * 64.94274 * 13 12 11 15 15 C 1.54872 * 109.44941 * 184.86842 * 13 12 11 16 16 C 1.47091 * 110.32107 * 191.29114 * 15 13 12 17 17 C 1.52569 * 114.32569 * 297.19026 * 16 15 13 18 18 C 1.50881 * 109.35251 * 85.03001 * 17 16 15 19 19 C 1.53943 * 110.09075 * 268.11225 * 18 17 16 20 20 N 1.44579 * 109.44461 * 304.99584 * 13 12 11 21 21 C 1.36941 * 118.64556 * 329.26500 * 20 13 12 22 22 H 1.07997 * 120.00127 * 331.68254 * 21 20 13 23 23 C 1.38807 * 119.99895 * 151.67483 * 21 20 13 24 24 N 1.31617 * 120.00303 * 344.50240 * 23 21 20 25 25 Si 1.86806 * 119.99920 * 164.49461 * 23 21 20 26 26 H 1.48497 * 109.47029 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46840 * 120.00299 * 25 23 21 28 28 H 1.48500 * 109.47168 * 240.00288 * 25 23 21 29 29 H 1.09001 * 109.47390 * 60.00140 * 1 2 3 30 30 H 1.09004 * 109.46706 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47491 * 299.99483 * 1 2 3 32 32 H 1.08999 * 109.46989 * 240.00639 * 2 1 3 33 33 H 1.08994 * 109.47667 * 120.00051 * 2 1 3 34 34 H 1.08996 * 109.47181 * 269.96548 * 6 5 4 35 35 H 1.09004 * 109.46636 * 29.96479 * 6 5 4 36 36 H 1.08998 * 109.47182 * 149.95901 * 6 5 4 37 37 H 1.08002 * 126.29689 * 179.97438 * 7 5 4 38 38 H 0.97006 * 120.00077 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.46939 * 300.00058 * 12 11 9 40 40 H 1.09000 * 109.47423 * 59.99559 * 12 11 9 41 41 H 1.09001 * 109.32415 * 311.54829 * 15 13 12 42 42 H 1.08999 * 109.32858 * 71.02399 * 15 13 12 43 43 H 1.08999 * 108.51296 * 175.93521 * 16 15 13 44 44 H 1.08994 * 108.38864 * 58.35069 * 16 15 13 45 45 H 1.08994 * 109.49585 * 325.05769 * 17 16 15 46 46 H 1.09007 * 109.50773 * 204.99949 * 17 16 15 47 47 H 1.09000 * 109.37011 * 147.92004 * 18 17 16 48 48 H 1.09000 * 109.26256 * 28.23618 * 18 17 16 49 49 H 1.09007 * 108.94547 * 279.87266 * 19 18 17 50 50 H 1.09000 * 108.87756 * 161.19937 * 19 18 17 51 51 H 0.97003 * 120.00152 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2846 2.1447 -1.0555 5 7 2.7379 3.4031 -0.6442 6 6 3.1315 4.5024 -1.5290 7 6 2.7508 3.4334 0.6979 8 6 2.3084 2.2039 1.1432 9 6 2.1596 1.7838 2.5485 10 8 1.7577 0.6661 2.8097 11 7 2.4688 2.6383 3.5437 12 6 2.3204 2.2211 4.9402 13 6 2.7347 3.3694 5.8624 14 1 2.0454 4.2040 5.7350 15 6 2.6953 2.8888 7.3341 16 6 2.8250 4.0333 8.2489 17 6 4.1480 4.7842 8.1324 18 6 4.0490 5.8023 7.0232 19 6 4.5344 5.1887 5.6974 20 7 4.0748 3.7963 5.5273 21 6 4.9539 2.8708 5.0314 22 1 4.8529 1.8304 5.3029 23 6 5.9746 3.2699 4.1797 24 7 5.9283 4.4537 3.6063 25 14 7.4143 2.1269 3.8473 26 1 7.2295 0.8644 4.6070 27 1 7.4814 1.8249 2.3949 28 1 8.6760 2.7826 4.2755 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.1962 4.4277 -1.7499 35 1 2.5629 4.4432 -2.4571 36 1 2.9281 5.4543 -1.0384 37 1 3.0518 4.2665 1.3158 38 1 2.7897 3.5297 3.3354 39 1 1.2801 1.9585 5.1323 40 1 2.9547 1.3552 5.1301 41 1 1.7491 2.3816 7.5227 42 1 3.5158 2.1927 7.5084 43 1 2.7210 3.6721 9.2721 44 1 2.0123 4.7303 8.0449 45 1 4.9481 4.0788 7.9083 46 1 4.3629 5.2911 9.0732 47 1 4.6665 6.6661 7.2692 48 1 3.0113 6.1183 6.9167 49 1 5.6241 5.2066 5.6771 50 1 4.1554 5.7899 4.8709 51 1 6.6419 4.7328 3.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968905232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:13 Heat of formation + Delta-G solvation = 31.559319 kcal Electronic energy + Delta-G solvation = -30849.780764 eV Core-core repulsion = 26978.247301 eV Total energy + Delta-G solvation = -3871.533463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.38035 -40.33226 -39.29314 -36.05835 -35.52167 -35.10102 -33.38603 -32.58419 -32.41466 -31.27393 -28.60887 -27.78331 -27.06638 -25.17378 -24.78708 -23.72645 -22.93963 -21.37828 -20.95401 -20.73257 -20.41589 -18.78674 -17.79158 -17.20854 -16.97934 -16.66250 -16.29012 -16.11756 -15.86033 -15.59212 -15.42301 -15.18050 -15.09774 -14.80620 -14.46444 -14.25857 -13.99555 -13.73778 -13.64935 -13.47696 -13.32296 -13.10755 -12.90150 -12.84725 -12.81712 -12.67478 -12.41126 -12.34004 -12.09266 -11.98368 -11.73178 -11.50054 -11.36353 -11.28134 -11.15802 -10.99169 -10.62621 -10.33983 -10.32246 -9.85022 -9.43483 -8.50102 -7.77153 -5.18136 0.58416 1.15931 1.38170 1.45962 1.48265 1.50565 2.50344 2.56932 2.71807 3.38312 3.40012 3.65292 3.74108 4.03853 4.08195 4.15389 4.25427 4.29063 4.35625 4.39142 4.46931 4.48495 4.53041 4.57042 4.65406 4.66621 4.69574 4.72953 4.75229 4.92661 5.04840 5.05280 5.13905 5.17647 5.21108 5.30747 5.31025 5.33027 5.42722 5.47049 5.54914 5.59889 5.71420 5.77397 5.81165 5.86074 5.92868 5.94842 6.51452 6.56339 6.93004 7.31440 7.54879 8.04979 8.42818 9.26158 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.004357 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.312408 B = 6424.933608 C = 7242.568293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.045 4.045 3 C 0.119 3.881 4 N -0.323 5.323 5 N -0.361 5.361 6 C 0.089 3.911 7 C 0.120 3.880 8 C -0.312 4.312 9 C 0.585 3.415 10 O -0.591 6.591 11 N -0.688 5.688 12 C 0.136 3.864 13 C 0.174 3.826 14 H 0.058 0.942 15 C -0.128 4.128 16 C -0.100 4.100 17 C -0.104 4.104 18 C -0.133 4.133 19 C 0.191 3.809 20 N -0.586 5.586 21 C -0.225 4.225 22 H 0.044 0.956 23 C -0.019 4.019 24 N -0.912 5.912 25 Si 0.920 3.080 26 H -0.285 1.285 27 H -0.305 1.305 28 H -0.293 1.293 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.198 0.802 38 H 0.406 0.594 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.037 0.963 50 H 0.007 0.993 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 3.972 -2.660 10.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 C -0.048 4.048 4 N -0.145 5.145 5 N -0.138 5.138 6 C -0.050 4.050 7 C -0.033 4.033 8 C -0.326 4.326 9 C 0.374 3.626 10 O -0.474 6.474 11 N -0.336 5.336 12 C 0.011 3.989 13 C 0.066 3.934 14 H 0.076 0.924 15 C -0.169 4.169 16 C -0.137 4.137 17 C -0.142 4.142 18 C -0.172 4.172 19 C 0.066 3.934 20 N -0.308 5.308 21 C -0.356 4.356 22 H 0.062 0.938 23 C -0.216 4.216 24 N -0.559 5.559 25 Si 0.753 3.247 26 H -0.210 1.210 27 H -0.234 1.234 28 H -0.220 1.220 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.215 0.785 38 H 0.241 0.759 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.055 0.945 50 H 0.025 0.975 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.138 3.495 -3.952 10.552 hybrid contribution 1.799 -0.237 0.446 1.868 sum -7.339 3.258 -3.506 8.762 Atomic orbital electron populations 1.21519 0.92842 1.02832 1.01177 1.20089 0.97485 0.87494 1.03410 1.22667 0.95754 0.97490 0.88872 1.77003 1.23073 0.91675 1.22781 1.48614 1.48327 1.11846 1.05030 1.22357 1.02313 0.85667 0.94687 1.23368 0.95309 0.99021 0.85591 1.20364 1.21211 0.96745 0.94319 1.17436 0.76687 0.84176 0.84333 1.90626 1.50378 1.21386 1.85002 1.45504 1.65234 1.17314 1.05563 1.21415 0.98966 0.97836 0.80652 1.20668 0.86545 0.93938 0.92214 0.92382 1.21284 1.00960 0.98366 0.96289 1.20270 0.97230 0.97313 0.98917 1.20910 0.98003 0.97714 0.97528 1.21948 1.00947 0.97983 0.96298 1.20774 0.97366 0.83110 0.92167 1.43763 1.07392 1.06205 1.73488 1.18933 1.07086 0.90006 1.19567 0.93798 1.25095 1.01341 0.97379 0.97741 1.70072 1.32962 1.20309 1.32542 0.85938 0.82531 0.79831 0.76422 1.21033 1.23363 1.21981 0.92479 0.90145 0.93997 0.89648 0.90184 0.89712 0.87669 0.86466 0.78505 0.75864 0.91761 0.94298 0.90994 0.94103 0.92132 0.91967 0.93982 0.91988 0.92136 0.92125 0.94456 0.97487 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.89 71.98 0.71 -2.65 16 2 C -0.05 -1.43 5.97 29.85 0.18 -1.25 16 3 C 0.12 4.25 6.52 43.52 0.28 4.53 16 4 N -0.32 -10.86 12.50 -46.67 -0.58 -11.44 16 5 N -0.36 -10.46 3.98 -367.77 -1.46 -11.92 16 6 C 0.09 1.58 11.44 127.77 1.46 3.04 16 7 C 0.12 3.86 10.99 84.28 0.93 4.79 16 8 C -0.31 -11.70 6.13 -20.15 -0.12 -11.82 16 9 C 0.59 24.19 7.81 86.66 0.68 24.86 16 10 O -0.59 -26.77 14.92 -4.05 -0.06 -26.84 16 11 N -0.69 -26.97 4.71 -466.38 -2.20 -29.16 16 12 C 0.14 5.14 4.52 86.38 0.39 5.53 16 13 C 0.17 6.13 2.19 45.99 0.10 6.23 16 14 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 15 C -0.13 -3.97 5.06 29.40 0.15 -3.82 16 16 C -0.10 -2.72 5.16 28.61 0.15 -2.57 16 17 C -0.10 -3.17 5.51 29.76 0.16 -3.00 16 18 C -0.13 -4.23 5.71 30.22 0.17 -4.06 16 19 C 0.19 7.80 4.66 86.49 0.40 8.20 16 20 N -0.59 -24.40 1.77 -674.24 -1.20 -25.59 16 21 C -0.22 -10.97 7.62 84.03 0.64 -10.33 16 22 H 0.04 2.32 6.74 -2.91 -0.02 2.30 16 23 C -0.02 -0.97 4.86 84.86 0.41 -0.56 16 24 N -0.91 -46.44 11.13 21.65 0.24 -46.20 16 25 Si 0.92 44.36 29.58 68.60 2.03 46.39 16 26 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 2.85 6.56 -2.39 -0.02 2.84 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.20 5.76 7.46 -2.91 -0.02 5.74 16 38 H 0.41 15.95 7.00 -92.70 -0.65 15.30 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.04 1.69 6.84 -2.39 -0.02 1.67 16 41 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.54 7.35 -2.39 -0.02 1.52 16 45 H 0.04 1.56 7.48 -2.39 -0.02 1.54 16 46 H 0.06 1.62 8.14 -2.38 -0.02 1.61 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.06 1.75 7.31 -2.39 -0.02 1.73 16 49 H 0.04 1.78 6.47 -2.38 -0.02 1.77 16 50 H 0.01 0.31 8.02 -2.39 -0.02 0.29 16 51 H 0.24 12.48 8.31 -92.71 -0.77 11.71 16 Total: -1.00 -62.74 397.38 3.74 -59.01 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.27 Total: 28.62 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 6.70 Total: 17.14 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -5.20 Total: -124.32 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.84 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.74 3.74 -59.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968905232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.566 kcal (2) G-P(sol) polarization free energy of solvation -62.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds