Wall clock time and date at job start Tue Mar 31 2020 19:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46910 * 2 1 4 4 C 1.50700 * 109.47313 * 179.97438 * 3 2 1 5 5 C 1.35367 * 126.38331 * 274.71714 * 4 3 2 6 6 C 1.41503 * 105.49934 * 180.25601 * 5 4 3 7 7 C 1.47708 * 126.51657 * 179.97438 * 6 5 4 8 8 O 1.21565 * 120.00409 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00026 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00210 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47088 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.45081 * 65.00027 * 11 10 9 13 13 C 1.54872 * 109.44628 * 184.94454 * 11 10 9 14 14 C 1.47104 * 110.31108 * 191.32064 * 13 11 10 15 15 C 1.52565 * 114.31072 * 297.14924 * 14 13 11 16 16 C 1.50880 * 109.35107 * 85.04103 * 15 14 13 17 17 C 1.53947 * 110.09446 * 268.11573 * 16 15 14 18 18 N 1.44571 * 109.44987 * 305.04791 * 11 10 9 19 19 C 1.36941 * 118.64504 * 329.27024 * 18 11 10 20 20 H 1.08006 * 119.99718 * 331.66870 * 19 18 11 21 21 C 1.38808 * 120.00350 * 151.66980 * 19 18 11 22 22 N 1.31614 * 119.99990 * 344.50046 * 21 19 18 23 23 Si 1.86798 * 119.99955 * 164.49109 * 21 19 18 24 24 H 1.48508 * 109.46839 * 90.00409 * 23 21 19 25 25 H 1.48505 * 109.47212 * 210.00026 * 23 21 19 26 26 H 1.48497 * 109.47324 * 330.00365 * 23 21 19 27 27 N 1.31808 * 106.96391 * 0.02562 * 6 5 4 28 28 N 1.28463 * 110.07446 * 359.97438 * 27 6 5 29 29 H 0.97006 * 124.88550 * 179.97438 * 28 27 6 30 30 H 1.09006 * 109.46858 * 59.99944 * 1 2 3 31 31 H 1.08999 * 109.46869 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47341 * 299.99801 * 1 2 3 33 33 H 1.08999 * 109.47341 * 240.00199 * 2 1 3 34 34 H 1.08996 * 109.47164 * 119.99618 * 2 1 3 35 35 H 1.09006 * 109.47273 * 59.99758 * 3 2 1 36 36 H 1.08999 * 109.47280 * 300.00110 * 3 2 1 37 37 H 1.07991 * 127.25128 * 0.21655 * 5 4 3 38 38 H 0.97003 * 119.99883 * 359.97438 * 9 7 6 39 39 H 1.09003 * 109.46502 * 299.99378 * 10 9 7 40 40 H 1.09001 * 109.47357 * 59.99167 * 10 9 7 41 41 H 1.09004 * 109.32974 * 311.55032 * 13 11 10 42 42 H 1.08997 * 109.33198 * 71.03521 * 13 11 10 43 43 H 1.09008 * 108.51433 * 175.91192 * 14 13 11 44 44 H 1.09004 * 108.41647 * 58.31806 * 14 13 11 45 45 H 1.09001 * 109.48955 * 325.08047 * 15 14 13 46 46 H 1.09004 * 109.51609 * 205.01936 * 15 14 13 47 47 H 1.09000 * 109.36735 * 147.92696 * 16 15 14 48 48 H 1.09001 * 109.26021 * 28.24565 * 16 15 14 49 49 H 1.09002 * 108.94884 * 279.87525 * 17 16 15 50 50 H 1.09000 * 108.87338 * 161.20000 * 17 16 15 51 51 H 0.97009 * 120.00027 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3495 1.3532 1.0871 6 6 5.6718 1.4008 0.5854 7 6 6.9158 1.3384 1.3793 8 8 6.8603 1.2354 2.5893 9 7 8.1127 1.3958 0.7622 10 6 9.3465 1.3334 1.5494 11 6 10.5537 1.4174 0.6132 12 1 10.5698 2.3936 0.1284 13 6 11.8549 1.2264 1.4311 14 6 13.0278 1.5684 0.6119 15 6 13.2189 0.6797 -0.6135 16 6 12.3853 1.2128 -1.7525 17 6 11.0006 0.5402 -1.7546 18 7 10.4566 0.3825 -0.3915 19 6 9.8338 -0.7927 -0.0654 20 1 9.8346 -1.1384 0.9579 21 6 9.2016 -1.5397 -1.0498 22 7 8.9306 -0.9951 -2.2169 23 14 8.7355 -3.3179 -0.7181 24 1 7.3660 -3.3723 -0.1463 25 1 8.7719 -4.0846 -1.9894 26 1 9.6979 -3.9105 0.2451 27 7 5.5822 1.5124 -0.7249 28 7 4.3485 1.5380 -1.0819 29 1 4.0373 1.6154 -1.9974 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 4.0448 1.2649 2.1193 38 1 8.1571 1.4777 -0.2034 39 1 9.3721 2.1669 2.2514 40 1 9.3790 0.3934 2.1002 41 1 11.8275 1.8723 2.3087 42 1 11.9295 0.1877 1.7529 43 1 13.9189 1.4944 1.2353 44 1 12.9253 2.6009 0.2779 45 1 12.9047 -0.3371 -0.3778 46 1 14.2701 0.6780 -0.9017 47 1 12.8891 1.0060 -2.6968 48 1 12.2639 2.2898 -1.6359 49 1 11.0853 -0.4429 -2.2179 50 1 10.3134 1.1496 -2.3416 51 1 8.4891 -1.5173 -2.9050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968977243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:40 Heat of formation + Delta-G solvation = 19.496467 kcal Electronic energy + Delta-G solvation = -30124.100910 eV Core-core repulsion = 26252.044363 eV Total energy + Delta-G solvation = -3872.056547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.64372 -40.53713 -39.43603 -36.24230 -35.97624 -35.19594 -33.43961 -32.66701 -32.43565 -31.81827 -28.74679 -27.48785 -27.22499 -25.25074 -25.00833 -23.19633 -22.80401 -21.90179 -21.39958 -20.77905 -20.61661 -18.65414 -18.35501 -17.55792 -17.24574 -16.73898 -16.57710 -16.18138 -15.94031 -15.90857 -15.46907 -15.20782 -15.01443 -14.79430 -14.62985 -14.36878 -14.27183 -13.90366 -13.69047 -13.38280 -13.14854 -13.03242 -12.91377 -12.83032 -12.70656 -12.45293 -12.38324 -12.13526 -12.01067 -11.80982 -11.54567 -11.51955 -11.38733 -11.31921 -11.21221 -11.18536 -10.87861 -10.42269 -10.34651 -9.91964 -9.75966 -8.51525 -7.77927 -5.20140 0.62313 1.14412 1.37236 1.42226 1.47320 1.96698 2.39447 2.52834 2.57624 3.37608 3.50709 3.62325 3.68016 3.99615 4.05862 4.10433 4.16425 4.26005 4.31136 4.43954 4.48240 4.51757 4.57318 4.62846 4.68507 4.71365 4.82556 4.83692 4.96041 4.98056 5.02633 5.08886 5.14549 5.23229 5.27269 5.28412 5.31903 5.38662 5.40237 5.44234 5.46317 5.57418 5.65178 5.69798 5.78152 5.80900 5.91044 6.16711 6.48663 6.66009 6.97787 7.28691 7.32851 8.02887 8.41477 9.25551 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.003475 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.080291 B = 8055.193181 C = 8933.503259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.042 4.042 4 C 0.034 3.966 5 C -0.202 4.202 6 C -0.035 4.035 7 C 0.589 3.411 8 O -0.586 6.586 9 N -0.677 5.677 10 C 0.130 3.870 11 C 0.173 3.827 12 H 0.054 0.946 13 C -0.127 4.127 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.132 4.132 17 C 0.191 3.809 18 N -0.587 5.587 19 C -0.236 4.236 20 H 0.048 0.952 21 C -0.023 4.023 22 N -0.912 5.912 23 Si 0.927 3.073 24 H -0.303 1.303 25 H -0.292 1.292 26 H -0.278 1.278 27 N -0.268 5.268 28 N -0.367 5.367 29 H 0.457 0.543 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.037 0.963 50 H -0.002 1.002 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 8.414 0.909 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.080 4.080 4 C -0.092 4.092 5 C -0.230 4.230 6 C -0.195 4.195 7 C 0.374 3.626 8 O -0.467 6.467 9 N -0.324 5.324 10 C 0.006 3.994 11 C 0.065 3.935 12 H 0.072 0.928 13 C -0.167 4.167 14 C -0.138 4.138 15 C -0.141 4.141 16 C -0.170 4.170 17 C 0.066 3.934 18 N -0.309 5.309 19 C -0.366 4.366 20 H 0.065 0.935 21 C -0.220 4.220 22 N -0.557 5.557 23 Si 0.758 3.242 24 H -0.232 1.232 25 H -0.218 1.218 26 H -0.203 1.203 27 N -0.104 5.104 28 N -0.084 5.084 29 H 0.305 0.695 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.181 0.819 38 H 0.248 0.752 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.016 0.984 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.571 8.379 0.661 12.005 hybrid contribution -0.800 -1.626 -0.233 1.827 sum -9.371 6.753 0.428 11.559 Atomic orbital electron populations 1.21741 0.93614 1.02222 1.02884 1.21539 0.97261 0.95418 1.01923 1.20365 0.83115 0.98519 1.06020 1.21893 0.96482 1.04845 0.86029 1.21662 0.89919 1.10607 1.00840 1.21955 0.95540 1.11527 0.90484 1.17244 0.82817 0.76394 0.86146 1.90665 1.87676 1.53893 1.14439 1.45649 1.04674 1.70230 1.11845 1.21571 0.83643 1.00362 0.93866 1.20694 0.91913 0.91742 0.89180 0.92807 1.21279 0.95791 1.01054 0.98607 1.20277 0.97617 0.99336 0.96520 1.20907 0.98477 0.99434 0.95253 1.21935 0.96685 0.99823 0.98593 1.20753 0.90312 0.97787 0.84536 1.43738 1.64513 1.13233 1.09417 1.18934 1.26274 0.98034 0.93405 0.93471 1.25246 0.99060 1.00248 0.97460 1.70136 1.45115 1.34928 1.05563 0.85909 0.77360 0.84386 0.76509 1.23166 1.21846 1.20349 1.73684 1.02954 1.19067 1.14741 1.43438 1.02175 1.51945 1.10832 0.69548 0.91479 0.92681 0.91623 0.92786 0.92720 0.87498 0.87880 0.81904 0.75241 0.91141 0.93674 0.90716 0.93827 0.91759 0.92076 0.93908 0.91724 0.92037 0.92298 0.94405 0.98356 0.94755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.92 5.92 30.60 0.18 -1.74 16 3 C -0.04 -0.60 5.77 29.85 0.17 -0.43 16 4 C 0.03 0.83 6.48 41.40 0.27 1.10 16 5 C -0.20 -6.55 10.73 22.41 0.24 -6.31 16 6 C -0.04 -1.41 7.13 42.46 0.30 -1.11 16 7 C 0.59 26.58 7.82 86.75 0.68 27.26 16 8 O -0.59 -28.43 16.93 -3.92 -0.07 -28.49 16 9 N -0.68 -29.89 4.71 -466.11 -2.20 -32.09 16 10 C 0.13 5.30 4.52 86.38 0.39 5.69 16 11 C 0.17 6.63 2.19 45.99 0.10 6.73 16 12 H 0.05 1.99 8.06 -2.39 -0.02 1.98 16 13 C -0.13 -4.14 5.06 29.40 0.15 -3.99 16 14 C -0.10 -2.88 5.16 28.62 0.15 -2.73 16 15 C -0.10 -3.33 5.51 29.76 0.16 -3.17 16 16 C -0.13 -4.56 5.71 30.22 0.17 -4.39 16 17 C 0.19 8.60 4.66 86.49 0.40 9.01 16 18 N -0.59 -26.68 1.77 -674.23 -1.19 -27.87 16 19 C -0.24 -12.30 7.62 84.03 0.64 -11.66 16 20 H 0.05 2.60 6.75 -2.91 -0.02 2.58 16 21 C -0.02 -1.27 4.86 84.86 0.41 -0.86 16 22 N -0.91 -51.07 11.13 21.65 0.24 -50.83 16 23 Si 0.93 46.27 29.58 68.60 2.03 48.30 16 24 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 25 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 27 N -0.27 -10.05 11.92 -48.18 -0.57 -10.63 16 28 N -0.37 -9.89 6.83 -47.93 -0.33 -10.22 16 29 H 0.46 8.62 8.96 -219.99 -1.97 6.65 16 30 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.16 4.91 8.06 -2.92 -0.02 4.89 16 38 H 0.41 19.35 7.80 -92.71 -0.72 18.62 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.04 2.05 6.84 -2.39 -0.02 2.03 16 41 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.06 1.62 7.35 -2.38 -0.02 1.61 16 45 H 0.04 1.66 7.48 -2.39 -0.02 1.64 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.06 1.88 7.31 -2.39 -0.02 1.86 16 49 H 0.04 1.95 6.47 -2.39 -0.02 1.93 16 50 H 0.00 -0.08 8.02 -2.39 -0.02 -0.10 16 51 H 0.24 13.60 8.31 -92.70 -0.77 12.83 16 Total: -1.00 -68.42 400.47 1.28 -67.14 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -1.76 Total: 32.23 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 5.14 Total: 12.47 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -4.05 Total: -131.64 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.07 Total: -28.49 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -68.42 1.28 -67.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968977243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.632 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds