Wall clock time and date at job start Tue Mar 31 2020 19:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47552 * 2 1 4 4 C 1.50697 * 109.47327 * 120.00437 * 2 1 3 5 5 C 1.35368 * 126.38526 * 145.29058 * 4 2 1 6 6 C 1.41508 * 105.49895 * 180.08483 * 5 4 2 7 7 C 1.47710 * 126.51380 * 179.90030 * 6 5 4 8 8 O 1.21567 * 120.00423 * 359.71780 * 7 6 5 9 9 N 1.34780 * 120.00034 * 179.71435 * 7 6 5 10 10 C 1.46496 * 120.00234 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47413 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.44484 * 64.99911 * 11 10 9 13 13 C 1.54860 * 109.45184 * 184.94948 * 11 10 9 14 14 C 1.47046 * 110.34381 * 191.30101 * 13 11 10 15 15 C 1.52565 * 114.31413 * 297.16464 * 14 13 11 16 16 C 1.50877 * 109.34742 * 85.03022 * 15 14 13 17 17 C 1.53945 * 110.09434 * 268.11469 * 16 15 14 18 18 N 1.44576 * 109.45006 * 305.05940 * 11 10 9 19 19 C 1.36939 * 118.63777 * 329.28830 * 18 11 10 20 20 H 1.07996 * 120.00548 * 331.66918 * 19 18 11 21 21 C 1.38812 * 120.00020 * 151.67400 * 19 18 11 22 22 N 1.31620 * 119.99992 * 344.49671 * 21 19 18 23 23 Si 1.86806 * 120.00246 * 164.49141 * 21 19 18 24 24 H 1.48501 * 109.46551 * 90.00165 * 23 21 19 25 25 H 1.48496 * 109.47208 * 210.00116 * 23 21 19 26 26 H 1.48492 * 109.47121 * 330.00656 * 23 21 19 27 27 N 1.31800 * 106.96690 * 359.64419 * 6 5 4 28 28 N 1.28470 * 110.07548 * 0.22259 * 27 6 5 29 29 H 0.97001 * 124.89230 * 180.02562 * 28 27 6 30 30 H 1.09002 * 109.46927 * 299.99910 * 1 2 3 31 31 H 1.09004 * 109.47485 * 59.99489 * 1 2 3 32 32 H 1.09003 * 109.47610 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46927 * 240.00089 * 2 1 3 34 34 H 1.09000 * 109.47228 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47143 * 300.00721 * 3 2 1 36 36 H 1.09002 * 109.46931 * 60.00092 * 3 2 1 37 37 H 1.07994 * 127.24889 * 359.97438 * 5 4 2 38 38 H 0.97000 * 119.99692 * 0.02562 * 9 7 6 39 39 H 1.09003 * 109.46919 * 60.00162 * 10 9 7 40 40 H 1.09000 * 109.47466 * 300.00153 * 10 9 7 41 41 H 1.09001 * 109.33088 * 311.52308 * 13 11 10 42 42 H 1.08993 * 109.33296 * 71.00638 * 13 11 10 43 43 H 1.09004 * 108.52113 * 175.91743 * 14 13 11 44 44 H 1.08999 * 108.40157 * 58.33140 * 14 13 11 45 45 H 1.09000 * 109.48769 * 325.07092 * 15 14 13 46 46 H 1.08998 * 109.51414 * 205.01106 * 15 14 13 47 47 H 1.09007 * 109.36788 * 147.92433 * 16 15 14 48 48 H 1.08997 * 109.26870 * 28.24171 * 16 15 14 49 49 H 1.09003 * 108.94615 * 279.88030 * 17 16 15 50 50 H 1.08998 * 108.87714 * 161.20282 * 17 16 15 51 51 H 0.97004 * 119.99879 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 3.1446 -1.4771 1.3171 6 6 3.1933 -1.9224 2.6594 7 6 4.2234 -2.7948 3.2592 8 8 5.1430 -3.2060 2.5787 9 7 4.1438 -3.1347 4.5609 10 6 5.1657 -3.9994 5.1560 11 6 4.8418 -4.2296 6.6335 12 1 3.9082 -4.7859 6.7180 13 6 5.9859 -5.0391 7.2923 14 6 5.5810 -5.5026 8.6277 15 6 5.2924 -4.3812 9.6211 16 6 3.8663 -3.9185 9.4522 17 6 3.8045 -2.7494 8.4526 18 7 4.7042 -2.9543 7.3005 19 6 5.4387 -1.8924 6.8443 20 1 6.3883 -2.0615 6.3584 21 6 4.9628 -0.5985 7.0064 22 7 3.6984 -0.3957 7.3104 23 14 6.1169 0.8548 6.7932 24 1 6.1038 1.2932 5.3744 25 1 5.6697 1.9736 7.6612 26 1 7.4947 0.4529 7.1742 27 7 2.1478 -1.4063 3.2740 28 7 1.4601 -0.6962 2.4534 29 1 0.6470 -0.2182 2.6799 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 3.8461 -1.7029 0.5276 38 1 3.4099 -2.8068 5.1038 39 1 6.1417 -3.5223 5.0677 40 1 5.1806 -4.9564 4.6344 41 1 6.2235 -5.9010 6.6687 42 1 6.8696 -4.4074 7.3820 43 1 6.3765 -6.1279 9.0332 44 1 4.6832 -6.1117 8.5229 45 1 5.9697 -3.5477 9.4353 46 1 5.4378 -4.7485 10.6370 47 1 3.4760 -3.5911 10.4159 48 1 3.2617 -4.7452 9.0793 49 1 4.0892 -1.8303 8.9648 50 1 2.7817 -2.6496 8.0895 51 1 3.3659 0.5085 7.4241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969038196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:46 Heat of formation + Delta-G solvation = 39.941441 kcal Electronic energy + Delta-G solvation = -30365.076376 eV Core-core repulsion = 26493.906389 eV Total energy + Delta-G solvation = -3871.169987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.42208 -38.86920 -37.80867 -35.79284 -34.37325 -33.37541 -31.86767 -31.31163 -30.61302 -29.55065 -27.44993 -26.97960 -25.65086 -23.70223 -23.35565 -22.62377 -21.45313 -20.74141 -19.83906 -19.14854 -18.92418 -17.35065 -16.62407 -15.85308 -15.62597 -15.37974 -15.06448 -14.74026 -14.56018 -14.15470 -14.01706 -13.86683 -13.51963 -13.48602 -13.24817 -13.14919 -12.74412 -12.67109 -12.48562 -12.01211 -11.87919 -11.54662 -11.45821 -11.39719 -11.30411 -11.17033 -11.02460 -10.77641 -10.54246 -10.41267 -10.15735 -9.97451 -9.92847 -9.64084 -9.57427 -9.48972 -9.31038 -9.04983 -8.73392 -8.34390 -8.05215 -6.60565 -5.74250 -3.17704 2.05268 2.39088 3.10214 3.40289 3.47212 3.50342 3.93828 4.14445 4.47714 4.54643 4.58701 4.84470 4.95876 5.18253 5.27381 5.32075 5.42049 5.47937 5.49583 5.52659 5.55827 5.68080 5.70820 5.72873 5.86621 5.91042 5.97986 6.02175 6.08441 6.15473 6.16277 6.21614 6.38122 6.43223 6.62945 6.66751 6.68951 6.71003 6.77257 6.82069 6.89843 7.05968 7.16557 7.21859 7.37056 7.46971 7.72498 7.90088 8.13964 8.50390 8.54133 9.04128 9.28330 9.93167 10.38617 11.32527 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.003660 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.428405 B = 7649.213076 C = 8440.410116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.023 4.023 3 C -0.147 4.147 4 C 0.009 3.991 5 C -0.180 4.180 6 C -0.001 4.001 7 C 0.596 3.404 8 O -0.560 6.560 9 N -0.674 5.674 10 C 0.128 3.872 11 C 0.174 3.826 12 H 0.044 0.956 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.106 4.106 16 C -0.143 4.143 17 C 0.182 3.818 18 N -0.582 5.582 19 C -0.251 4.251 20 H 0.062 0.938 21 C 0.016 3.984 22 N -0.895 5.895 23 Si 0.889 3.111 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.280 1.280 27 N -0.237 5.237 28 N -0.382 5.382 29 H 0.440 0.560 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.157 0.843 38 H 0.418 0.582 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.038 0.962 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.024 0.976 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 -1.965 -8.749 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.043 4.043 3 C -0.205 4.205 4 C -0.116 4.116 5 C -0.208 4.208 6 C -0.163 4.163 7 C 0.379 3.621 8 O -0.439 6.439 9 N -0.323 5.323 10 C 0.004 3.996 11 C 0.065 3.935 12 H 0.062 0.938 13 C -0.177 4.177 14 C -0.138 4.138 15 C -0.144 4.144 16 C -0.182 4.182 17 C 0.057 3.943 18 N -0.304 5.304 19 C -0.381 4.381 20 H 0.080 0.920 21 C -0.183 4.183 22 N -0.539 5.539 23 Si 0.719 3.281 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 N -0.072 5.072 28 N -0.096 5.096 29 H 0.284 0.716 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.175 0.825 38 H 0.256 0.744 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.090 0.910 50 H 0.042 0.958 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.855 -2.108 -8.100 10.819 hybrid contribution 0.253 1.404 -0.339 1.467 sum -6.602 -0.704 -8.439 10.738 Atomic orbital electron populations 1.21895 0.94453 1.02391 1.02294 1.19707 0.95609 0.95712 0.93308 1.21880 1.02069 0.94552 1.01971 1.21273 0.97110 1.04222 0.89010 1.21447 0.99257 1.02903 0.97224 1.22069 0.96805 1.04082 0.93325 1.16838 0.83452 0.79477 0.82292 1.90708 1.34463 1.56307 1.62406 1.45568 1.28756 1.48993 1.08966 1.21519 0.92388 0.92304 0.93416 1.20502 0.95287 0.88591 0.89162 0.93817 1.21365 1.00864 0.99291 0.96192 1.20277 0.99866 0.97639 0.96001 1.20945 0.98240 0.98758 0.96458 1.22072 0.95966 1.00308 0.99846 1.20973 0.92947 0.94338 0.86053 1.43687 1.50108 1.05152 1.31476 1.18967 0.99245 0.84883 1.34987 0.92038 1.24892 0.95070 0.97550 1.00835 1.70039 1.11839 1.19888 1.52155 0.86512 0.80975 0.83137 0.77478 1.21650 1.21833 1.20597 1.73787 1.05988 1.07826 1.19611 1.43305 1.22583 1.37571 1.06091 0.71631 0.92843 0.91501 0.92033 0.88631 0.91823 0.91901 0.92644 0.82513 0.74437 0.91270 0.93078 0.93311 0.91806 0.94134 0.93561 0.90757 0.94277 0.93330 0.93829 0.90991 0.95797 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.95 37.16 0.33 -0.75 16 2 C -0.02 -0.21 3.32 -91.78 -0.30 -0.51 16 3 C -0.15 -1.27 9.18 37.16 0.34 -0.93 16 4 C 0.01 0.12 5.92 -82.21 -0.49 -0.36 16 5 C -0.18 -2.93 10.73 -39.36 -0.42 -3.36 16 6 C 0.00 -0.02 7.13 -82.77 -0.59 -0.61 16 7 C 0.60 12.98 7.82 -12.39 -0.10 12.88 16 8 O -0.56 -13.16 16.93 5.31 0.09 -13.07 16 9 N -0.67 -14.43 4.71 -61.29 -0.29 -14.72 16 10 C 0.13 2.59 4.52 -4.04 -0.02 2.57 16 11 C 0.17 3.38 2.19 -67.98 -0.15 3.24 16 12 H 0.04 0.84 8.06 -51.93 -0.42 0.43 16 13 C -0.14 -2.35 5.06 -28.61 -0.14 -2.50 16 14 C -0.10 -1.61 5.16 -29.81 -0.15 -1.76 16 15 C -0.11 -1.84 5.51 -28.02 -0.15 -1.99 16 16 C -0.14 -2.60 5.71 -27.30 -0.16 -2.75 16 17 C 0.18 4.04 4.66 -2.95 -0.01 4.02 16 18 N -0.58 -13.05 1.77 -164.47 -0.29 -13.34 16 19 C -0.25 -6.36 7.61 -15.06 -0.11 -6.48 16 20 H 0.06 1.63 6.75 -52.49 -0.35 1.28 16 21 C 0.02 0.41 4.86 -17.43 -0.08 0.33 16 22 N -0.90 -24.26 11.14 55.49 0.62 -23.64 16 23 Si 0.89 21.90 29.58 -169.99 -5.03 16.87 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 27 N -0.24 -4.39 11.92 33.42 0.40 -3.99 16 28 N -0.38 -5.37 6.64 33.50 0.22 -5.14 16 29 H 0.44 4.71 8.14 -190.44 -1.55 3.16 16 30 H 0.05 0.35 7.43 -51.93 -0.39 -0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 38 H 0.42 9.49 7.80 -40.82 -0.32 9.17 16 39 H 0.07 1.52 6.84 -51.93 -0.36 1.17 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.71 7.35 -51.93 -0.38 0.33 16 45 H 0.07 1.48 7.48 -51.93 -0.39 1.09 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 48 H 0.04 0.76 7.31 -51.93 -0.38 0.38 16 49 H 0.07 1.81 6.47 -51.93 -0.34 1.47 16 50 H 0.02 0.58 8.02 -51.93 -0.42 0.16 16 51 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -29.95 398.03 -10.41 -40.37 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -9.91 Total: 9.65 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.22 Total: 1.02 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.66 Total: -60.84 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.95 -10.41 -40.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969038196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.307 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds