Wall clock time and date at job start Tue Mar 31 2020 19:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47552 * 2 1 4 4 C 1.50697 * 109.47327 * 120.00437 * 2 1 3 5 5 C 1.35368 * 126.38526 * 145.29058 * 4 2 1 6 6 C 1.41508 * 105.49895 * 180.08483 * 5 4 2 7 7 C 1.47710 * 126.51380 * 179.90030 * 6 5 4 8 8 O 1.21567 * 120.00423 * 359.71780 * 7 6 5 9 9 N 1.34780 * 120.00034 * 179.71435 * 7 6 5 10 10 C 1.46496 * 120.00234 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47413 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.44484 * 64.99911 * 11 10 9 13 13 C 1.54860 * 109.45184 * 184.94948 * 11 10 9 14 14 C 1.47046 * 110.34381 * 191.30101 * 13 11 10 15 15 C 1.52565 * 114.31413 * 297.16464 * 14 13 11 16 16 C 1.50877 * 109.34742 * 85.03022 * 15 14 13 17 17 C 1.53945 * 110.09434 * 268.11469 * 16 15 14 18 18 N 1.44576 * 109.45006 * 305.05940 * 11 10 9 19 19 C 1.36939 * 118.63777 * 329.28830 * 18 11 10 20 20 H 1.07996 * 120.00548 * 331.66918 * 19 18 11 21 21 C 1.38812 * 120.00020 * 151.67400 * 19 18 11 22 22 N 1.31620 * 119.99992 * 344.49671 * 21 19 18 23 23 Si 1.86806 * 120.00246 * 164.49141 * 21 19 18 24 24 H 1.48501 * 109.46551 * 90.00165 * 23 21 19 25 25 H 1.48496 * 109.47208 * 210.00116 * 23 21 19 26 26 H 1.48492 * 109.47121 * 330.00656 * 23 21 19 27 27 N 1.31800 * 106.96690 * 359.64419 * 6 5 4 28 28 N 1.28470 * 110.07548 * 0.22259 * 27 6 5 29 29 H 0.97001 * 124.89230 * 180.02562 * 28 27 6 30 30 H 1.09002 * 109.46927 * 299.99910 * 1 2 3 31 31 H 1.09004 * 109.47485 * 59.99489 * 1 2 3 32 32 H 1.09003 * 109.47610 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46927 * 240.00089 * 2 1 3 34 34 H 1.09000 * 109.47228 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47143 * 300.00721 * 3 2 1 36 36 H 1.09002 * 109.46931 * 60.00092 * 3 2 1 37 37 H 1.07994 * 127.24889 * 359.97438 * 5 4 2 38 38 H 0.97000 * 119.99692 * 0.02562 * 9 7 6 39 39 H 1.09003 * 109.46919 * 60.00162 * 10 9 7 40 40 H 1.09000 * 109.47466 * 300.00153 * 10 9 7 41 41 H 1.09001 * 109.33088 * 311.52308 * 13 11 10 42 42 H 1.08993 * 109.33296 * 71.00638 * 13 11 10 43 43 H 1.09004 * 108.52113 * 175.91743 * 14 13 11 44 44 H 1.08999 * 108.40157 * 58.33140 * 14 13 11 45 45 H 1.09000 * 109.48769 * 325.07092 * 15 14 13 46 46 H 1.08998 * 109.51414 * 205.01106 * 15 14 13 47 47 H 1.09007 * 109.36788 * 147.92433 * 16 15 14 48 48 H 1.08997 * 109.26870 * 28.24171 * 16 15 14 49 49 H 1.09003 * 108.94615 * 279.88030 * 17 16 15 50 50 H 1.08998 * 108.87714 * 161.20282 * 17 16 15 51 51 H 0.97004 * 119.99879 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 3.1446 -1.4771 1.3171 6 6 3.1933 -1.9224 2.6594 7 6 4.2234 -2.7948 3.2592 8 8 5.1430 -3.2060 2.5787 9 7 4.1438 -3.1347 4.5609 10 6 5.1657 -3.9994 5.1560 11 6 4.8418 -4.2296 6.6335 12 1 3.9082 -4.7859 6.7180 13 6 5.9859 -5.0391 7.2923 14 6 5.5810 -5.5026 8.6277 15 6 5.2924 -4.3812 9.6211 16 6 3.8663 -3.9185 9.4522 17 6 3.8045 -2.7494 8.4526 18 7 4.7042 -2.9543 7.3005 19 6 5.4387 -1.8924 6.8443 20 1 6.3883 -2.0615 6.3584 21 6 4.9628 -0.5985 7.0064 22 7 3.6984 -0.3957 7.3104 23 14 6.1169 0.8548 6.7932 24 1 6.1038 1.2932 5.3744 25 1 5.6697 1.9736 7.6612 26 1 7.4947 0.4529 7.1742 27 7 2.1478 -1.4063 3.2740 28 7 1.4601 -0.6962 2.4534 29 1 0.6470 -0.2182 2.6799 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 3.8461 -1.7029 0.5276 38 1 3.4099 -2.8068 5.1038 39 1 6.1417 -3.5223 5.0677 40 1 5.1806 -4.9564 4.6344 41 1 6.2235 -5.9010 6.6687 42 1 6.8696 -4.4074 7.3820 43 1 6.3765 -6.1279 9.0332 44 1 4.6832 -6.1117 8.5229 45 1 5.9697 -3.5477 9.4353 46 1 5.4378 -4.7485 10.6370 47 1 3.4760 -3.5911 10.4159 48 1 3.2617 -4.7452 9.0793 49 1 4.0892 -1.8303 8.9648 50 1 2.7817 -2.6496 8.0895 51 1 3.3659 0.5085 7.4241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969038196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:45 Heat of formation + Delta-G solvation = 22.279437 kcal Electronic energy + Delta-G solvation = -30365.842258 eV Core-core repulsion = 26493.906389 eV Total energy + Delta-G solvation = -3871.935869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.69175 -40.54395 -39.44249 -36.61904 -35.98491 -35.19692 -33.40047 -32.69407 -32.44030 -30.73526 -28.69470 -28.04731 -27.34692 -25.26066 -25.05169 -23.72545 -22.90303 -21.90650 -21.36210 -20.78046 -20.51978 -18.49868 -18.28958 -17.49329 -17.24641 -16.77128 -16.61465 -16.20204 -15.92114 -15.72147 -15.45282 -15.20902 -15.03181 -14.85043 -14.58036 -14.35434 -14.24928 -13.90087 -13.68947 -13.38297 -13.14985 -13.06312 -12.91254 -12.83183 -12.70762 -12.38365 -12.35977 -12.15691 -12.08459 -12.01069 -11.60948 -11.53035 -11.38837 -11.32044 -11.21504 -11.18600 -10.88042 -10.42800 -10.34618 -9.94123 -9.76072 -8.51632 -7.77846 -5.20096 0.62148 1.14752 1.37365 1.42291 1.47417 1.94645 2.38710 2.52857 2.57197 3.37607 3.49669 3.58553 3.62358 3.89354 4.05694 4.10274 4.17897 4.27078 4.33916 4.43827 4.45378 4.51872 4.59619 4.62826 4.68344 4.70873 4.77151 4.83198 4.94593 5.01326 5.02525 5.08781 5.13603 5.14464 5.27119 5.28334 5.33884 5.35382 5.36818 5.40217 5.44162 5.57356 5.65092 5.69773 5.78052 5.80890 5.90963 6.14045 6.48727 6.65599 6.97331 7.28679 7.32741 8.02836 8.41460 9.25635 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.003660 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.428405 B = 7649.213076 C = 8440.410116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.021 4.021 3 C -0.146 4.146 4 C 0.039 3.961 5 C -0.203 4.203 6 C -0.034 4.034 7 C 0.589 3.411 8 O -0.586 6.586 9 N -0.676 5.676 10 C 0.130 3.870 11 C 0.173 3.827 12 H 0.054 0.946 13 C -0.127 4.127 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.132 4.132 17 C 0.191 3.809 18 N -0.587 5.587 19 C -0.234 4.234 20 H 0.048 0.952 21 C -0.025 4.025 22 N -0.912 5.912 23 Si 0.928 3.072 24 H -0.303 1.303 25 H -0.292 1.292 26 H -0.278 1.278 27 N -0.267 5.267 28 N -0.366 5.366 29 H 0.455 0.545 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.164 0.836 38 H 0.411 0.589 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.037 0.963 50 H -0.002 1.002 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.898 -2.882 -9.354 12.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.040 4.040 3 C -0.204 4.204 4 C -0.088 4.088 5 C -0.231 4.231 6 C -0.194 4.194 7 C 0.374 3.626 8 O -0.467 6.467 9 N -0.324 5.324 10 C 0.005 3.995 11 C 0.065 3.935 12 H 0.072 0.928 13 C -0.168 4.168 14 C -0.137 4.137 15 C -0.141 4.141 16 C -0.171 4.171 17 C 0.067 3.933 18 N -0.310 5.310 19 C -0.365 4.365 20 H 0.065 0.935 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.759 3.241 24 H -0.232 1.232 25 H -0.219 1.219 26 H -0.203 1.203 27 N -0.104 5.104 28 N -0.082 5.082 29 H 0.302 0.698 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.182 0.818 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.016 0.984 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.840 -3.048 -8.682 12.089 hybrid contribution 0.527 1.698 -0.223 1.792 sum -7.314 -1.350 -8.905 11.602 Atomic orbital electron populations 1.21907 0.92495 1.02730 1.03720 1.19919 0.97163 0.95531 0.91437 1.21886 1.01159 0.94269 1.03076 1.21856 0.95294 1.01997 0.89653 1.21667 1.00936 1.04237 0.96253 1.21947 0.97276 1.05321 0.94839 1.17231 0.83713 0.79423 0.82192 1.90665 1.35638 1.57483 1.62867 1.45643 1.28625 1.49127 1.08971 1.21575 0.90978 0.92685 0.94233 1.20687 0.96741 0.87510 0.88533 0.92840 1.21267 0.98688 0.99340 0.97458 1.20265 1.01394 0.97422 0.94664 1.20907 0.96488 0.98232 0.98450 1.21938 0.97262 0.98830 0.99037 1.20744 0.91153 0.94980 0.86459 1.43750 1.49643 1.05563 1.32009 1.18924 0.98611 0.85720 1.33280 0.93461 1.25264 0.95846 0.98905 1.02117 1.70139 1.12487 1.19331 1.53801 0.85898 0.80166 0.81734 0.76309 1.23158 1.21865 1.20340 1.73692 1.06511 1.09156 1.21001 1.43368 1.22494 1.36317 1.06045 0.69820 0.92328 0.89286 0.92255 0.87074 0.93312 0.89204 0.93188 0.81834 0.75249 0.93643 0.91137 0.90710 0.93812 0.91748 0.92089 0.93902 0.91713 0.92029 0.92304 0.94404 0.98390 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.95 71.98 0.64 -1.02 16 2 C -0.02 -0.32 3.32 -11.54 -0.04 -0.36 16 3 C -0.15 -2.19 9.18 71.98 0.66 -1.53 16 4 C 0.04 0.97 5.92 41.40 0.25 1.22 16 5 C -0.20 -6.65 10.73 22.41 0.24 -6.41 16 6 C -0.03 -1.36 7.13 42.46 0.30 -1.06 16 7 C 0.59 26.63 7.82 86.75 0.68 27.31 16 8 O -0.59 -28.43 16.93 -3.93 -0.07 -28.50 16 9 N -0.68 -29.89 4.71 -466.10 -2.20 -32.09 16 10 C 0.13 5.29 4.52 86.38 0.39 5.68 16 11 C 0.17 6.66 2.19 45.99 0.10 6.76 16 12 H 0.05 1.99 8.06 -2.39 -0.02 1.97 16 13 C -0.13 -4.15 5.06 29.38 0.15 -4.00 16 14 C -0.10 -2.88 5.16 28.60 0.15 -2.74 16 15 C -0.10 -3.33 5.51 29.76 0.16 -3.17 16 16 C -0.13 -4.58 5.71 30.22 0.17 -4.41 16 17 C 0.19 8.63 4.66 86.49 0.40 9.04 16 18 N -0.59 -26.74 1.77 -674.27 -1.19 -27.93 16 19 C -0.23 -12.24 7.61 84.03 0.64 -11.60 16 20 H 0.05 2.60 6.75 -2.91 -0.02 2.58 16 21 C -0.02 -1.34 4.86 84.86 0.41 -0.93 16 22 N -0.91 -51.13 11.14 21.65 0.24 -50.89 16 23 Si 0.93 46.30 29.58 68.60 2.03 48.33 16 24 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 25 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 26 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 27 N -0.27 -10.11 11.92 -48.18 -0.57 -10.68 16 28 N -0.37 -10.11 6.64 -47.93 -0.32 -10.42 16 29 H 0.45 9.22 8.14 -219.99 -1.79 7.43 16 30 H 0.06 0.59 7.43 -2.39 -0.02 0.58 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.16 4.96 8.06 -2.91 -0.02 4.94 16 38 H 0.41 19.37 7.80 -92.71 -0.72 18.65 16 39 H 0.05 2.06 6.84 -2.39 -0.02 2.05 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.06 1.62 7.35 -2.39 -0.02 1.61 16 45 H 0.04 1.66 7.48 -2.39 -0.02 1.65 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.06 1.88 7.31 -2.39 -0.02 1.86 16 49 H 0.04 1.95 6.47 -2.39 -0.02 1.93 16 50 H 0.00 -0.10 8.02 -2.39 -0.02 -0.12 16 51 H 0.24 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -67.99 398.03 1.65 -66.34 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -1.58 Total: 33.06 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.31 Total: 12.79 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -4.04 Total: -132.02 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.07 Total: -28.50 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -67.99 1.65 -66.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969038196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.617 kcal (2) G-P(sol) polarization free energy of solvation -67.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds