Wall clock time and date at job start Tue Mar 31 2020 19:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 C 1.50698 * 109.47273 * 120.00353 * 2 1 3 5 5 C 1.35361 * 126.39125 * 144.99762 * 4 2 1 6 6 C 1.41497 * 105.50765 * 179.97438 * 5 4 2 7 7 C 1.47711 * 126.52085 * 180.02562 * 6 5 4 8 8 O 1.21567 * 119.99916 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00159 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99975 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47012 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.45147 * 295.05066 * 11 10 9 13 13 C 1.54871 * 109.42593 * 175.11663 * 11 10 9 14 14 C 1.47089 * 110.32059 * 168.70748 * 13 11 10 15 15 C 1.52572 * 114.32880 * 62.79927 * 14 13 11 16 16 C 1.50883 * 109.36125 * 274.99078 * 15 14 13 17 17 C 1.54300 * 110.23644 * 91.79442 * 16 15 14 18 18 N 1.44576 * 109.44908 * 55.00016 * 11 10 9 19 19 C 1.36935 * 118.64479 * 30.71654 * 18 11 10 20 20 H 1.08001 * 120.00348 * 29.99446 * 19 18 11 21 21 C 1.38812 * 120.00098 * 209.98991 * 19 18 11 22 22 N 1.31620 * 119.99977 * 25.15545 * 21 19 18 23 23 Si 1.86798 * 120.00275 * 205.15685 * 21 19 18 24 24 H 1.48499 * 109.47217 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.47190 * 59.99614 * 23 21 19 26 26 H 1.48503 * 109.47165 * 299.99996 * 23 21 19 27 27 N 1.31816 * 106.96306 * 0.25796 * 6 5 4 28 28 N 1.28471 * 110.06605 * 359.56196 * 27 6 5 29 29 H 0.97002 * 124.87327 * 180.15545 * 28 27 6 30 30 H 1.09002 * 109.47053 * 299.99935 * 1 2 3 31 31 H 1.09003 * 109.47185 * 59.99940 * 1 2 3 32 32 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47053 * 240.00065 * 2 1 3 34 34 H 1.09002 * 109.47044 * 60.00060 * 3 2 1 35 35 H 1.09005 * 109.47083 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47654 * 299.99798 * 3 2 1 37 37 H 1.08004 * 127.24439 * 359.97438 * 5 4 2 38 38 H 0.97002 * 119.99888 * 359.97438 * 9 7 6 39 39 H 1.09003 * 109.47459 * 60.00074 * 10 9 7 40 40 H 1.08995 * 109.47368 * 300.00132 * 10 9 7 41 41 H 1.08997 * 109.32816 * 288.96409 * 13 11 10 42 42 H 1.08995 * 109.32681 * 48.61829 * 13 11 10 43 43 H 1.09000 * 108.51496 * 184.05620 * 14 13 11 44 44 H 1.09007 * 108.51537 * 301.70525 * 14 13 11 45 45 H 1.09004 * 109.48806 * 34.95322 * 15 14 13 46 46 H 1.08995 * 109.49271 * 155.02099 * 15 14 13 47 47 H 1.08991 * 109.36771 * 212.07430 * 16 15 14 48 48 H 1.09004 * 109.36336 * 331.69176 * 16 15 14 49 49 H 1.08997 * 109.13605 * 199.01629 * 17 16 15 50 50 H 1.08998 * 108.95478 * 80.26656 * 17 16 15 51 51 H 0.97003 * 120.00070 * 5.91197 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 3.1415 -1.4816 1.3159 6 6 3.1930 -1.9227 2.6593 7 6 4.2228 -2.7954 3.2592 8 8 5.1426 -3.2063 2.5788 9 7 4.1432 -3.1352 4.5609 10 6 5.1649 -4.0003 5.1559 11 6 4.8410 -4.2301 6.6335 12 1 4.9126 -3.2852 7.1721 13 6 5.8501 -5.2418 7.2307 14 6 5.7326 -5.2758 8.6965 15 6 4.3754 -5.7498 9.2074 16 6 3.4216 -4.5815 9.2516 17 6 2.6399 -4.4803 7.9251 18 7 3.4990 -4.7538 6.7564 19 6 3.0024 -5.5309 5.7442 20 1 3.6711 -6.1362 5.1502 21 6 1.6393 -5.5409 5.4816 22 7 0.8974 -4.5061 5.8148 23 14 0.8581 -7.0229 4.6555 24 1 -0.5984 -6.7862 4.4888 25 1 1.0701 -8.2278 5.4972 26 1 1.4814 -7.2333 3.3241 27 7 2.1445 -1.4108 3.2726 28 7 1.4601 -0.6960 2.4534 29 1 0.6467 -0.2184 2.6798 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 3.8402 -1.7117 0.5250 38 1 3.4098 -2.8064 5.1040 39 1 6.1411 -3.5235 5.0675 40 1 5.1793 -4.9572 4.6344 41 1 5.6461 -6.2345 6.8294 42 1 6.8628 -4.9441 6.9593 43 1 6.5019 -5.9401 9.0901 44 1 5.9135 -4.2722 9.0816 45 1 3.9821 -6.5153 8.5384 46 1 4.4885 -6.1650 10.2089 47 1 2.7205 -4.7182 10.0748 48 1 3.9844 -3.6612 9.4076 49 1 2.2235 -3.4774 7.8314 50 1 1.8225 -5.2012 7.9400 51 1 1.3141 -3.7030 6.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969038197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:50 Heat of formation + Delta-G solvation = 18.814077 kcal Electronic energy + Delta-G solvation = -30413.501243 eV Core-core repulsion = 26541.415105 eV Total energy + Delta-G solvation = -3872.086138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.71905 -40.64814 -39.56579 -36.62853 -36.09296 -35.44687 -33.49042 -32.73813 -32.32418 -30.75568 -28.62135 -28.03607 -27.40830 -25.24600 -25.01021 -23.79950 -23.00119 -21.93398 -21.42417 -20.82365 -20.65533 -18.85280 -18.50872 -17.60744 -17.22760 -16.84212 -16.68815 -16.16315 -15.79289 -15.68549 -15.57147 -15.45892 -15.04654 -14.88671 -14.61898 -14.37729 -14.30163 -13.90524 -13.79498 -13.59028 -13.43153 -13.05786 -12.92671 -12.64145 -12.61236 -12.37506 -12.16515 -12.08478 -12.03533 -11.97215 -11.70509 -11.62526 -11.46849 -11.38958 -11.31760 -11.04326 -10.98881 -10.46134 -10.27216 -9.96005 -9.83555 -8.74409 -8.02821 -5.24123 0.57981 1.12861 1.54543 1.58499 1.75601 1.91249 2.33038 2.50660 2.67284 3.29919 3.45140 3.53714 3.56710 3.87626 3.94931 4.01099 4.17565 4.19067 4.26175 4.33957 4.39283 4.42784 4.51001 4.54129 4.58445 4.70023 4.74077 4.76885 4.89143 4.94736 4.96095 5.01416 5.01680 5.13516 5.13998 5.15071 5.24643 5.32305 5.33702 5.34593 5.37687 5.42355 5.51602 5.55149 5.60191 5.69237 6.04798 6.11568 6.54192 6.63411 6.92553 7.23207 7.28705 7.94108 8.31111 9.18294 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003645 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.147411 B = 7680.108201 C = 8550.631780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.022 4.022 3 C -0.142 4.142 4 C 0.041 3.959 5 C -0.202 4.202 6 C -0.035 4.035 7 C 0.590 3.410 8 O -0.585 6.585 9 N -0.677 5.677 10 C 0.133 3.867 11 C 0.174 3.826 12 H 0.053 0.947 13 C -0.126 4.126 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.126 4.126 17 C 0.167 3.833 18 N -0.593 5.593 19 C -0.330 4.330 20 H 0.031 0.969 21 C -0.052 4.052 22 N -0.929 5.929 23 Si 1.085 2.915 24 H -0.294 1.294 25 H -0.283 1.283 26 H -0.297 1.297 27 N -0.268 5.268 28 N -0.365 5.365 29 H 0.455 0.545 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.164 0.836 38 H 0.407 0.593 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.062 0.938 49 H -0.001 1.001 50 H 0.032 0.968 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 11.336 -4.613 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.042 4.042 3 C -0.199 4.199 4 C -0.086 4.086 5 C -0.230 4.230 6 C -0.195 4.195 7 C 0.375 3.625 8 O -0.465 6.465 9 N -0.324 5.324 10 C 0.009 3.991 11 C 0.067 3.933 12 H 0.071 0.929 13 C -0.166 4.166 14 C -0.138 4.138 15 C -0.141 4.141 16 C -0.165 4.165 17 C 0.042 3.958 18 N -0.316 5.316 19 C -0.461 4.461 20 H 0.049 0.951 21 C -0.252 4.252 22 N -0.571 5.571 23 Si 0.914 3.086 24 H -0.221 1.221 25 H -0.210 1.210 26 H -0.224 1.224 27 N -0.105 5.105 28 N -0.081 5.081 29 H 0.302 0.698 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.182 0.818 38 H 0.242 0.758 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.017 0.983 50 H 0.051 0.949 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.664 10.385 -4.470 11.326 hybrid contribution 0.880 0.461 0.028 0.993 sum 1.544 10.846 -4.441 11.821 Atomic orbital electron populations 1.21923 0.92973 1.02324 1.03888 1.19928 0.96793 0.96172 0.91274 1.21852 1.01391 0.93446 1.03234 1.21856 0.95028 1.02087 0.89643 1.21654 1.01344 1.03929 0.96089 1.21910 0.96940 1.05378 0.95251 1.17250 0.83684 0.79576 0.81958 1.90666 1.35920 1.57659 1.62259 1.45579 1.28585 1.48565 1.09645 1.21523 0.89722 0.93185 0.94715 1.20678 0.85872 0.95039 0.91736 0.92943 1.21248 0.98861 0.99595 0.96914 1.20279 0.96888 1.01426 0.95170 1.20906 0.95412 0.97693 1.00096 1.21891 0.98836 0.98845 0.96881 1.21093 0.92319 0.96402 0.85999 1.43790 1.11920 1.58730 1.17162 1.19627 0.93353 1.20683 1.12408 0.95108 1.26274 0.95178 1.03141 1.00604 1.70853 1.38892 1.02980 1.44328 0.83233 0.75136 0.74832 0.75393 1.22053 1.20995 1.22436 1.73666 1.05692 1.09094 1.22028 1.43351 1.22583 1.35816 1.06330 0.69802 0.92048 0.89104 0.93201 0.87466 0.92664 0.92723 0.89418 0.81813 0.75782 0.91235 0.93912 0.93990 0.90769 0.91622 0.91995 0.93971 0.91336 0.91567 0.91932 0.98344 0.94936 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.95 71.98 0.64 -1.32 16 2 C -0.02 -0.34 3.32 -11.54 -0.04 -0.38 16 3 C -0.14 -1.78 9.18 71.98 0.66 -1.12 16 4 C 0.04 1.03 5.92 41.40 0.25 1.28 16 5 C -0.20 -6.67 10.73 22.41 0.24 -6.43 16 6 C -0.03 -1.42 7.13 42.45 0.30 -1.12 16 7 C 0.59 27.02 7.82 86.75 0.68 27.70 16 8 O -0.58 -28.80 16.93 -3.93 -0.07 -28.86 16 9 N -0.68 -30.26 4.71 -466.11 -2.20 -32.46 16 10 C 0.13 5.55 4.52 86.38 0.39 5.94 16 11 C 0.17 6.78 2.19 45.99 0.10 6.88 16 12 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 13 C -0.13 -4.19 5.06 29.40 0.15 -4.04 16 14 C -0.10 -2.90 5.16 28.61 0.15 -2.75 16 15 C -0.10 -3.32 5.51 29.76 0.16 -3.16 16 16 C -0.13 -4.26 5.71 30.35 0.17 -4.09 16 17 C 0.17 7.38 4.57 86.61 0.40 7.77 16 18 N -0.59 -27.02 1.60 -673.55 -1.08 -28.09 16 19 C -0.33 -17.49 7.45 84.03 0.63 -16.86 16 20 H 0.03 1.76 6.89 -2.91 -0.02 1.74 16 21 C -0.05 -2.90 4.58 84.86 0.39 -2.51 16 22 N -0.93 -53.52 12.64 21.65 0.27 -53.24 16 23 Si 1.08 52.87 29.99 68.60 2.06 54.92 16 24 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 27 N -0.27 -10.21 11.92 -48.17 -0.57 -10.79 16 28 N -0.36 -10.18 6.64 -47.93 -0.32 -10.49 16 29 H 0.45 9.40 8.14 -219.99 -1.79 7.61 16 30 H 0.06 0.69 7.43 -2.39 -0.02 0.67 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.16 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.41 19.11 7.81 -92.71 -0.72 18.38 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.04 2.02 6.87 -2.39 -0.02 2.00 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 2.11 8.11 -2.39 -0.02 2.10 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.64 7.35 -2.38 -0.02 1.62 16 45 H 0.04 1.65 7.49 -2.38 -0.02 1.63 16 46 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 1.94 7.31 -2.38 -0.02 1.92 16 49 H 0.00 -0.06 7.15 -2.39 -0.02 -0.08 16 50 H 0.03 1.64 6.84 -2.39 -0.02 1.63 16 51 H 0.26 15.05 6.42 -92.71 -0.59 14.46 16 Total: -1.00 -69.74 397.03 1.96 -67.78 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -1.41 Total: 35.44 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 5.27 Total: 5.80 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -3.89 Total: -135.08 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.07 Total: -28.86 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 2.06 Total: 54.92 kcal Total: -69.74 1.96 -67.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969038197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.591 kcal (2) G-P(sol) polarization free energy of solvation -69.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds