Wall clock time and date at job start Tue Mar 31 2020 17:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47195 * 2 1 4 4 C 1.39673 * 126.06817 * 124.99729 * 3 2 1 5 5 C 1.38401 * 105.36193 * 180.02562 * 4 3 2 6 6 C 1.47162 * 126.88868 * 180.02562 * 5 4 3 7 7 O 1.21623 * 120.00389 * 174.73848 * 6 5 4 8 8 N 1.34782 * 119.99646 * 354.73530 * 6 5 4 9 9 C 1.46495 * 120.00008 * 184.79833 * 8 6 5 10 10 C 1.53002 * 109.47477 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.44686 * 295.00638 * 10 9 8 12 12 C 1.54864 * 109.42968 * 175.06605 * 10 9 8 13 13 C 1.47151 * 110.31328 * 168.74707 * 12 10 9 14 14 C 1.52567 * 114.34872 * 62.77694 * 13 12 10 15 15 C 1.50880 * 109.35079 * 274.99459 * 14 13 12 16 16 C 1.53946 * 110.09480 * 91.88088 * 15 14 13 17 17 N 1.44584 * 109.44671 * 54.94806 * 10 9 8 18 18 C 1.36942 * 118.64329 * 30.72957 * 17 10 9 19 19 H 1.07997 * 119.99868 * 31.04444 * 18 17 10 20 20 C 1.38809 * 119.99990 * 211.04659 * 18 17 10 21 21 N 1.31620 * 120.00377 * 10.25509 * 20 18 17 22 22 Si 1.86803 * 119.99925 * 190.25509 * 20 18 17 23 23 H 1.48505 * 109.46997 * 59.99931 * 22 20 18 24 24 H 1.48494 * 109.47095 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47097 * 300.00399 * 22 20 18 26 26 N 1.36603 * 106.22974 * 0.26275 * 5 4 3 27 27 C 1.46497 * 125.19011 * 179.73582 * 26 5 4 28 28 N 1.28440 * 109.61798 * 359.55580 * 26 5 4 29 29 H 1.08999 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47360 * 299.99638 * 1 2 3 31 31 H 1.09000 * 109.47176 * 59.99519 * 1 2 3 32 32 H 1.09003 * 109.46962 * 240.00599 * 2 1 3 33 33 H 1.08997 * 109.47680 * 120.00500 * 2 1 3 34 34 H 1.08004 * 127.31873 * 0.02562 * 4 3 2 35 35 H 0.96998 * 119.99771 * 4.80347 * 8 6 5 36 36 H 1.09002 * 109.47392 * 60.00022 * 9 8 6 37 37 H 1.09007 * 109.47022 * 300.00184 * 9 8 6 38 38 H 1.09003 * 109.32965 * 288.97956 * 12 10 9 39 39 H 1.08995 * 109.32970 * 48.46384 * 12 10 9 40 40 H 1.08996 * 108.49170 * 301.52931 * 13 12 10 41 41 H 1.09003 * 108.39727 * 183.95637 * 13 12 10 42 42 H 1.09001 * 109.49503 * 155.02807 * 14 13 12 43 43 H 1.09002 * 109.48950 * 34.95431 * 14 13 12 44 44 H 1.08998 * 109.36688 * 331.69478 * 15 14 13 45 45 H 1.08997 * 109.26251 * 212.00923 * 15 14 13 46 46 H 1.08994 * 108.94811 * 198.75388 * 16 15 14 47 47 H 1.09007 * 108.94310 * 80.12397 * 16 15 14 48 48 H 0.96998 * 120.00364 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.46842 * 93.61545 * 27 26 5 50 50 H 1.08993 * 109.47169 * 213.61437 * 27 26 5 51 51 H 1.09001 * 109.47204 * 333.61717 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9169 1.9803 0.9249 5 6 3.0834 3.2946 0.5243 6 6 3.9242 4.3151 1.1702 7 8 4.0543 5.4099 0.6567 8 7 4.5502 4.0365 2.3309 9 6 5.3012 5.0836 3.0278 10 6 5.9098 4.5084 4.3083 11 1 5.1114 4.2218 4.9927 12 6 6.8048 5.5793 4.9795 13 6 7.1832 5.1518 6.3357 14 6 8.0196 3.8767 6.3829 15 6 7.1044 2.6774 6.3613 16 6 6.8772 2.2115 4.9118 17 7 6.7055 3.3459 3.9831 18 6 7.3251 3.2949 2.7629 19 1 7.6540 4.2062 2.2858 20 6 7.5302 2.0719 2.1393 21 7 6.9573 0.9864 2.6145 22 14 8.6196 1.9665 0.6254 23 1 9.9887 2.4289 0.9676 24 1 8.6763 0.5597 0.1534 25 1 8.0603 2.8271 -0.4477 26 7 2.3066 3.4561 -0.5876 27 6 2.1704 4.7004 -1.3488 28 7 1.7167 2.3497 -0.8661 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3739 1.4912 1.7724 35 1 4.5034 3.1427 2.7047 36 1 4.6304 5.9046 3.2809 37 1 6.0976 5.4513 2.3807 38 1 7.7053 5.7228 4.3823 39 1 6.2591 6.5211 5.0368 40 1 6.2734 4.9904 6.9138 41 1 7.7512 5.9558 6.8039 42 1 8.6134 3.8648 7.2969 43 1 8.6822 3.8442 5.5179 44 1 6.1474 2.9449 6.8091 45 1 7.5581 1.8686 6.9341 46 1 5.9846 1.5870 4.8765 47 1 7.7345 1.6190 4.5920 48 1 7.1009 0.1317 2.1790 49 1 2.8863 4.7036 -2.1708 50 1 1.1588 4.7733 -1.7479 51 1 2.3649 5.5500 -0.6942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969090637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:45 Heat of formation + Delta-G solvation = 47.973277 kcal Electronic energy + Delta-G solvation = -30735.136901 eV Core-core repulsion = 26864.315201 eV Total energy + Delta-G solvation = -3870.821700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.21856 -39.03250 -37.93293 -34.82372 -34.34402 -33.49395 -32.13975 -31.39823 -30.75183 -30.28760 -27.09693 -26.64447 -25.65424 -23.51172 -23.24689 -23.09464 -21.77526 -20.35798 -19.84829 -19.23011 -18.80003 -17.40669 -16.15402 -16.05453 -15.79162 -15.55144 -14.90664 -14.66251 -14.29243 -14.09548 -14.01225 -13.98910 -13.58247 -13.52813 -13.29770 -13.03016 -12.79451 -12.66344 -12.28990 -12.08686 -12.00001 -11.90368 -11.51584 -11.36352 -11.26896 -11.15021 -11.08277 -10.84666 -10.63395 -10.29879 -10.22639 -10.06047 -10.00535 -9.71701 -9.64132 -9.60260 -9.41097 -8.80905 -8.56550 -8.44022 -8.23896 -6.67355 -5.83677 -3.32459 1.67720 2.69632 2.84589 3.36387 3.41231 3.44912 3.71164 3.85835 4.45968 4.67446 4.96055 5.18708 5.20277 5.25934 5.32056 5.34653 5.42473 5.43462 5.47208 5.55850 5.62427 5.67274 5.72019 5.86284 5.90729 5.98506 5.99945 6.05488 6.10583 6.13076 6.24252 6.28154 6.31231 6.36627 6.54401 6.59765 6.63475 6.68412 6.73600 6.82756 6.83474 6.97061 7.04515 7.07516 7.16453 7.40454 7.66942 7.80524 8.15289 8.38431 8.43210 8.76189 9.19891 9.82332 10.28807 11.22597 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.004089 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.260545 B = 6845.797620 C = 7272.052209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.035 4.035 3 C 0.021 3.979 4 C -0.174 4.174 5 C -0.027 4.027 6 C 0.585 3.415 7 O -0.567 6.567 8 N -0.670 5.670 9 C 0.131 3.869 10 C 0.174 3.826 11 H 0.045 0.955 12 C -0.136 4.136 13 C -0.101 4.101 14 C -0.106 4.106 15 C -0.144 4.144 16 C 0.182 3.818 17 N -0.583 5.583 18 C -0.253 4.253 19 H 0.060 0.940 20 C 0.018 3.982 21 N -0.901 5.901 22 Si 0.891 3.109 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.284 1.284 26 N -0.265 5.265 27 C 0.090 3.910 28 N -0.285 5.285 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.164 0.836 35 H 0.415 0.585 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.025 0.975 47 H 0.073 0.927 48 H 0.254 0.746 49 H 0.079 0.921 50 H 0.086 0.914 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 2.307 1.527 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.135 4.135 4 C -0.203 4.203 5 C -0.155 4.155 6 C 0.370 3.630 7 O -0.448 6.448 8 N -0.318 5.318 9 C 0.006 3.994 10 C 0.064 3.936 11 H 0.063 0.937 12 C -0.177 4.177 13 C -0.138 4.138 14 C -0.144 4.144 15 C -0.183 4.183 16 C 0.057 3.943 17 N -0.305 5.305 18 C -0.383 4.383 19 H 0.078 0.922 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.721 3.279 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.211 1.211 26 N -0.052 5.052 27 C -0.051 4.051 28 N -0.118 5.118 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.182 0.818 35 H 0.253 0.747 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.043 0.957 47 H 0.091 0.909 48 H 0.064 0.936 49 H 0.098 0.902 50 H 0.104 0.896 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.099 3.233 0.123 9.657 hybrid contribution 1.322 -0.646 -0.059 1.473 sum -7.776 2.587 0.064 8.196 Atomic orbital electron populations 1.21698 0.94961 1.01282 1.02204 1.19835 0.95727 0.88744 1.03088 1.21895 1.00631 0.96492 0.94502 1.22258 1.02353 0.92530 1.03153 1.21507 1.02766 0.97027 0.94176 1.16833 0.79584 0.85411 0.81180 1.90694 1.65331 1.24373 1.64406 1.45387 1.49051 1.15684 1.21708 1.21543 0.94612 0.88793 0.94405 1.20515 0.91835 0.88494 0.92714 0.93674 1.21384 1.01116 0.98294 0.96903 1.20295 0.99020 0.97274 0.97241 1.20946 0.98291 0.94440 1.00731 1.22081 0.98172 0.97351 1.00665 1.21004 1.00762 0.88281 0.84258 1.43687 1.55020 1.17112 1.14712 1.18936 1.31816 0.92546 0.95008 0.92227 1.24971 0.99220 0.96590 0.97303 1.69960 1.44474 0.98674 1.41344 0.86549 0.80951 0.76677 0.83688 1.21113 1.21671 1.21074 1.45424 1.30967 1.09141 1.19658 1.22253 1.03365 0.82293 0.97159 1.72979 1.20805 0.92722 1.25321 0.92568 0.92821 0.92400 0.90770 0.89898 0.81826 0.74735 0.93005 0.91048 0.91821 0.93323 0.93512 0.94122 0.94241 0.90790 0.93821 0.93302 0.95689 0.90860 0.93590 0.90215 0.89576 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.87 37.16 0.37 -1.21 16 2 C -0.03 -0.44 6.51 -27.88 -0.18 -0.63 16 3 C 0.02 0.35 6.49 -82.47 -0.54 -0.19 16 4 C -0.17 -3.07 10.43 -38.99 -0.41 -3.47 16 5 C -0.03 -0.50 6.96 -82.06 -0.57 -1.07 16 6 C 0.59 11.60 7.78 -12.64 -0.10 11.50 16 7 O -0.57 -11.97 14.69 5.26 0.08 -11.90 16 8 N -0.67 -12.90 4.70 -61.47 -0.29 -13.19 16 9 C 0.13 2.41 4.53 -4.04 -0.02 2.40 16 10 C 0.17 3.12 2.19 -67.97 -0.15 2.97 16 11 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 12 C -0.14 -2.20 5.07 -28.56 -0.14 -2.34 16 13 C -0.10 -1.52 5.16 -29.76 -0.15 -1.68 16 14 C -0.11 -1.75 5.51 -28.02 -0.15 -1.90 16 15 C -0.14 -2.47 5.71 -27.30 -0.16 -2.62 16 16 C 0.18 3.79 4.64 -2.94 -0.01 3.78 16 17 N -0.58 -12.20 1.77 -164.46 -0.29 -12.49 16 18 C -0.25 -6.06 7.54 -15.06 -0.11 -6.18 16 19 H 0.06 1.50 6.84 -52.49 -0.36 1.14 16 20 C 0.02 0.46 4.98 -17.43 -0.09 0.38 16 21 N -0.90 -22.97 11.00 55.49 0.61 -22.36 16 22 Si 0.89 21.26 29.57 -169.99 -5.03 16.23 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 N -0.26 -4.54 3.75 -63.89 -0.24 -4.78 16 27 C 0.09 1.21 10.87 59.85 0.65 1.86 16 28 N -0.28 -4.85 11.87 33.64 0.40 -4.45 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.16 2.82 7.58 -52.48 -0.40 2.42 16 35 H 0.42 8.27 7.11 -40.82 -0.29 7.98 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.47 6.90 -51.93 -0.36 1.11 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.70 8.11 -51.93 -0.42 0.27 16 40 H 0.05 0.68 7.36 -51.93 -0.38 0.30 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.41 7.48 -51.93 -0.39 1.02 16 44 H 0.04 0.71 7.32 -51.93 -0.38 0.33 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.02 0.56 7.98 -51.93 -0.41 0.15 16 47 H 0.07 1.75 6.51 -51.93 -0.34 1.42 16 48 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.11 1.57 6.23 -51.93 -0.32 1.24 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -27.42 396.41 -9.23 -36.65 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -8.68 Total: 8.70 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.76 Total: 1.60 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.19 Total: -57.26 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -27.42 -9.23 -36.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969090637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.624 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds