Wall clock time and date at job start Tue Mar 31 2020 17:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47195 * 2 1 4 4 C 1.39673 * 126.06817 * 124.99729 * 3 2 1 5 5 C 1.38401 * 105.36193 * 180.02562 * 4 3 2 6 6 C 1.47162 * 126.88868 * 180.02562 * 5 4 3 7 7 O 1.21623 * 120.00389 * 174.73848 * 6 5 4 8 8 N 1.34782 * 119.99646 * 354.73530 * 6 5 4 9 9 C 1.46495 * 120.00008 * 184.79833 * 8 6 5 10 10 C 1.53002 * 109.47477 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.44686 * 295.00638 * 10 9 8 12 12 C 1.54864 * 109.42968 * 175.06605 * 10 9 8 13 13 C 1.47151 * 110.31328 * 168.74707 * 12 10 9 14 14 C 1.52567 * 114.34872 * 62.77694 * 13 12 10 15 15 C 1.50880 * 109.35079 * 274.99459 * 14 13 12 16 16 C 1.53946 * 110.09480 * 91.88088 * 15 14 13 17 17 N 1.44584 * 109.44671 * 54.94806 * 10 9 8 18 18 C 1.36942 * 118.64329 * 30.72957 * 17 10 9 19 19 H 1.07997 * 119.99868 * 31.04444 * 18 17 10 20 20 C 1.38809 * 119.99990 * 211.04659 * 18 17 10 21 21 N 1.31620 * 120.00377 * 10.25509 * 20 18 17 22 22 Si 1.86803 * 119.99925 * 190.25509 * 20 18 17 23 23 H 1.48505 * 109.46997 * 59.99931 * 22 20 18 24 24 H 1.48494 * 109.47095 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47097 * 300.00399 * 22 20 18 26 26 N 1.36603 * 106.22974 * 0.26275 * 5 4 3 27 27 C 1.46497 * 125.19011 * 179.73582 * 26 5 4 28 28 N 1.28440 * 109.61798 * 359.55580 * 26 5 4 29 29 H 1.08999 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47360 * 299.99638 * 1 2 3 31 31 H 1.09000 * 109.47176 * 59.99519 * 1 2 3 32 32 H 1.09003 * 109.46962 * 240.00599 * 2 1 3 33 33 H 1.08997 * 109.47680 * 120.00500 * 2 1 3 34 34 H 1.08004 * 127.31873 * 0.02562 * 4 3 2 35 35 H 0.96998 * 119.99771 * 4.80347 * 8 6 5 36 36 H 1.09002 * 109.47392 * 60.00022 * 9 8 6 37 37 H 1.09007 * 109.47022 * 300.00184 * 9 8 6 38 38 H 1.09003 * 109.32965 * 288.97956 * 12 10 9 39 39 H 1.08995 * 109.32970 * 48.46384 * 12 10 9 40 40 H 1.08996 * 108.49170 * 301.52931 * 13 12 10 41 41 H 1.09003 * 108.39727 * 183.95637 * 13 12 10 42 42 H 1.09001 * 109.49503 * 155.02807 * 14 13 12 43 43 H 1.09002 * 109.48950 * 34.95431 * 14 13 12 44 44 H 1.08998 * 109.36688 * 331.69478 * 15 14 13 45 45 H 1.08997 * 109.26251 * 212.00923 * 15 14 13 46 46 H 1.08994 * 108.94811 * 198.75388 * 16 15 14 47 47 H 1.09007 * 108.94310 * 80.12397 * 16 15 14 48 48 H 0.96998 * 120.00364 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.46842 * 93.61545 * 27 26 5 50 50 H 1.08993 * 109.47169 * 213.61437 * 27 26 5 51 51 H 1.09001 * 109.47204 * 333.61717 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9169 1.9803 0.9249 5 6 3.0834 3.2946 0.5243 6 6 3.9242 4.3151 1.1702 7 8 4.0543 5.4099 0.6567 8 7 4.5502 4.0365 2.3309 9 6 5.3012 5.0836 3.0278 10 6 5.9098 4.5084 4.3083 11 1 5.1114 4.2218 4.9927 12 6 6.8048 5.5793 4.9795 13 6 7.1832 5.1518 6.3357 14 6 8.0196 3.8767 6.3829 15 6 7.1044 2.6774 6.3613 16 6 6.8772 2.2115 4.9118 17 7 6.7055 3.3459 3.9831 18 6 7.3251 3.2949 2.7629 19 1 7.6540 4.2062 2.2858 20 6 7.5302 2.0719 2.1393 21 7 6.9573 0.9864 2.6145 22 14 8.6196 1.9665 0.6254 23 1 9.9887 2.4289 0.9676 24 1 8.6763 0.5597 0.1534 25 1 8.0603 2.8271 -0.4477 26 7 2.3066 3.4561 -0.5876 27 6 2.1704 4.7004 -1.3488 28 7 1.7167 2.3497 -0.8661 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3739 1.4912 1.7724 35 1 4.5034 3.1427 2.7047 36 1 4.6304 5.9046 3.2809 37 1 6.0976 5.4513 2.3807 38 1 7.7053 5.7228 4.3823 39 1 6.2591 6.5211 5.0368 40 1 6.2734 4.9904 6.9138 41 1 7.7512 5.9558 6.8039 42 1 8.6134 3.8648 7.2969 43 1 8.6822 3.8442 5.5179 44 1 6.1474 2.9449 6.8091 45 1 7.5581 1.8686 6.9341 46 1 5.9846 1.5870 4.8765 47 1 7.7345 1.6190 4.5920 48 1 7.1009 0.1317 2.1790 49 1 2.8863 4.7036 -2.1708 50 1 1.1588 4.7733 -1.7479 51 1 2.3649 5.5500 -0.6942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969090637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:44 Heat of formation + Delta-G solvation = 34.013384 kcal Electronic energy + Delta-G solvation = -30735.742247 eV Core-core repulsion = 26864.315201 eV Total energy + Delta-G solvation = -3871.427046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.54408 -40.57882 -39.45183 -36.18255 -35.62589 -35.18467 -33.55748 -32.59365 -32.42539 -31.69812 -28.64135 -27.84292 -27.22830 -25.17954 -24.56440 -24.29237 -23.20113 -21.77099 -21.25384 -20.75512 -20.24574 -18.79802 -17.85297 -17.41102 -17.24770 -17.15942 -16.38237 -16.18171 -15.92048 -15.58211 -15.29948 -15.16772 -15.02276 -14.81478 -14.67414 -14.51777 -14.24861 -13.78915 -13.66157 -13.43983 -13.35170 -13.16123 -12.98690 -12.87850 -12.83396 -12.70171 -12.39249 -12.34070 -12.17376 -12.00849 -11.53376 -11.51756 -11.36753 -11.29498 -11.18177 -11.15664 -10.86024 -10.34557 -10.24229 -9.85089 -9.76009 -8.46855 -7.76925 -5.23525 0.24305 1.39631 1.42917 1.44354 1.46619 1.54122 2.19919 2.40913 2.53090 3.39143 3.47314 3.60833 3.66331 3.98113 4.07095 4.11239 4.25957 4.26701 4.30362 4.36244 4.45494 4.47607 4.52866 4.57152 4.60301 4.64194 4.69132 4.77815 4.84853 4.88857 5.04562 5.10919 5.11535 5.16972 5.23913 5.28133 5.30327 5.37883 5.41745 5.45769 5.52295 5.57854 5.61894 5.71058 5.79121 5.79992 5.83492 5.96125 6.51842 6.59554 7.03564 7.19887 7.31001 8.03444 8.42645 9.25599 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.004089 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.260545 B = 6845.797620 C = 7272.052209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.037 4.037 3 C 0.019 3.981 4 C -0.181 4.181 5 C -0.049 4.049 6 C 0.582 3.418 7 O -0.585 6.585 8 N -0.670 5.670 9 C 0.134 3.866 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.128 4.128 13 C -0.100 4.100 14 C -0.103 4.103 15 C -0.133 4.133 16 C 0.191 3.809 17 N -0.587 5.587 18 C -0.235 4.235 19 H 0.045 0.955 20 C -0.017 4.017 21 N -0.911 5.911 22 Si 0.924 3.076 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.299 1.299 26 N -0.267 5.267 27 C 0.084 3.916 28 N -0.288 5.288 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.005 0.995 47 H 0.037 0.963 48 H 0.246 0.754 49 H 0.085 0.915 50 H 0.116 0.884 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 2.828 2.845 10.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.210 4.210 5 C -0.178 4.178 6 C 0.368 3.632 7 O -0.467 6.467 8 N -0.318 5.318 9 C 0.009 3.991 10 C 0.065 3.935 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.138 4.138 14 C -0.141 4.141 15 C -0.172 4.172 16 C 0.066 3.934 17 N -0.310 5.310 18 C -0.366 4.366 19 H 0.063 0.937 20 C -0.214 4.214 21 N -0.557 5.557 22 Si 0.756 3.244 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.227 1.227 26 N -0.055 5.055 27 C -0.055 4.055 28 N -0.122 5.122 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.179 0.821 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.023 0.977 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.104 0.896 50 H 0.134 0.866 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.236 3.779 1.455 11.007 hybrid contribution 1.671 -0.760 -0.479 1.897 sum -8.565 3.019 0.976 9.134 Atomic orbital electron populations 1.21646 0.93435 1.02716 1.01643 1.20008 0.97002 0.86620 1.03937 1.22455 0.99877 0.97838 0.93574 1.22358 1.02726 0.92447 1.03503 1.21472 1.03724 0.97208 0.95358 1.17035 0.79564 0.85467 0.81151 1.90672 1.66098 1.25141 1.64836 1.45434 1.48963 1.15619 1.21738 1.21578 0.94289 0.89236 0.93960 1.20694 0.92122 0.87862 0.92790 0.92321 1.21297 0.99903 0.98615 0.97036 1.20282 0.99742 0.97121 0.96631 1.20907 0.98000 0.94832 1.00383 1.21952 0.99396 0.98136 0.97716 1.20776 0.98229 0.87850 0.86536 1.43728 1.55400 1.17966 1.13886 1.18860 1.30521 0.91565 0.95615 0.93709 1.25254 1.00598 0.96984 0.98563 1.70037 1.45543 0.98392 1.41741 0.86043 0.80306 0.75799 0.82259 1.21124 1.22135 1.22692 1.45760 1.30380 1.09984 1.19376 1.22461 1.05404 0.80788 0.96812 1.72989 1.20846 0.92881 1.25454 0.90153 0.93194 0.93095 0.90048 0.88895 0.82075 0.75154 0.90850 0.93565 0.93974 0.90732 0.91947 0.92059 0.91999 0.94000 0.92149 0.92231 0.97664 0.94436 0.94393 0.89615 0.86607 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.87 71.98 0.71 -2.03 16 2 C -0.04 -0.88 6.51 29.85 0.19 -0.69 16 3 C 0.02 0.60 6.49 43.05 0.28 0.88 16 4 C -0.18 -6.42 10.43 22.66 0.24 -6.19 16 5 C -0.05 -1.85 6.96 40.78 0.28 -1.57 16 6 C 0.58 23.35 7.78 86.59 0.67 24.03 16 7 O -0.58 -24.95 14.69 -4.11 -0.06 -25.01 16 8 N -0.67 -25.99 4.70 -466.63 -2.20 -28.19 16 9 C 0.13 4.86 4.53 86.38 0.39 5.25 16 10 C 0.17 6.01 2.19 45.99 0.10 6.11 16 11 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 12 C -0.13 -3.84 5.07 29.41 0.15 -3.69 16 13 C -0.10 -2.69 5.16 28.63 0.15 -2.54 16 14 C -0.10 -3.16 5.51 29.76 0.16 -3.00 16 15 C -0.13 -4.31 5.71 30.22 0.17 -4.13 16 16 C 0.19 7.97 4.64 86.49 0.40 8.37 16 17 N -0.59 -24.59 1.77 -674.24 -1.19 -25.78 16 18 C -0.23 -11.45 7.54 84.03 0.63 -10.82 16 19 H 0.05 2.33 6.84 -2.91 -0.02 2.31 16 20 C -0.02 -0.86 4.98 84.86 0.42 -0.44 16 21 N -0.91 -47.64 11.00 21.65 0.24 -47.40 16 22 Si 0.92 44.66 29.57 68.60 2.03 46.69 16 23 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 25 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 26 N -0.27 -9.08 3.75 -356.04 -1.33 -10.41 16 27 C 0.08 2.23 10.87 127.77 1.39 3.62 16 28 N -0.29 -9.57 11.87 -47.49 -0.56 -10.14 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 34 H 0.16 5.68 7.58 -2.91 -0.02 5.66 16 35 H 0.41 16.62 7.11 -92.71 -0.66 15.96 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.05 1.92 6.90 -2.38 -0.02 1.91 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 40 H 0.06 1.52 7.36 -2.39 -0.02 1.51 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.04 1.55 7.48 -2.39 -0.02 1.53 16 44 H 0.06 1.77 7.32 -2.39 -0.02 1.76 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.01 0.24 7.98 -2.39 -0.02 0.22 16 47 H 0.04 1.83 6.51 -2.38 -0.02 1.81 16 48 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 49 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 50 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.10 2.90 6.23 -2.39 -0.01 2.88 16 Total: -1.00 -59.90 396.41 3.53 -56.37 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.26 Total: 30.70 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 6.35 Total: 13.16 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -5.05 Total: -121.92 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.06 Total: -25.01 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -59.90 3.53 -56.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969090637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.384 kcal (2) G-P(sol) polarization free energy of solvation -59.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds