Wall clock time and date at job start Tue Mar 31 2020 17:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47294 * 2 1 4 4 C 1.35371 * 126.38843 * 85.02092 * 3 2 1 5 5 C 1.41494 * 105.50438 * 179.97438 * 4 3 2 6 6 C 1.47713 * 126.51772 * 180.02562 * 5 4 3 7 7 O 1.21572 * 119.99848 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99780 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47024 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.45254 * 65.00450 * 10 9 8 12 12 C 1.54870 * 109.45100 * 184.95308 * 10 9 8 13 13 C 1.47048 * 110.34901 * 191.30067 * 12 10 9 14 14 C 1.52562 * 114.30927 * 297.16474 * 13 12 10 15 15 C 1.50885 * 109.35040 * 85.02897 * 14 13 12 16 16 C 1.53947 * 110.09256 * 268.10970 * 15 14 13 17 17 N 1.44581 * 109.44879 * 305.05401 * 10 9 8 18 18 C 1.36936 * 118.64693 * 329.29273 * 17 10 9 19 19 H 1.08000 * 119.99903 * 331.90719 * 18 17 10 20 20 C 1.38809 * 120.00125 * 151.89927 * 18 17 10 21 21 N 1.31618 * 120.00403 * 344.15487 * 20 18 17 22 22 Si 1.86798 * 119.99723 * 164.14809 * 20 18 17 23 23 H 1.48501 * 109.47300 * 94.37342 * 22 20 18 24 24 H 1.48501 * 109.47193 * 214.37544 * 22 20 18 25 25 H 1.48507 * 109.47290 * 334.37248 * 22 20 18 26 26 N 1.31814 * 106.96580 * 0.26170 * 5 4 3 27 27 N 1.28471 * 110.06885 * 359.55646 * 26 5 4 28 28 C 1.46495 * 124.88099 * 180.20178 * 27 26 5 29 29 H 1.09004 * 109.47166 * 60.00254 * 1 2 3 30 30 H 1.08997 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47510 * 300.00353 * 1 2 3 32 32 H 1.09003 * 109.47763 * 240.00027 * 2 1 3 33 33 H 1.09004 * 109.47166 * 119.99745 * 2 1 3 34 34 H 1.08001 * 127.24229 * 359.97382 * 4 3 2 35 35 H 0.96999 * 120.00187 * 0.02562 * 8 6 5 36 36 H 1.09006 * 109.47025 * 60.00414 * 9 8 6 37 37 H 1.08999 * 109.47472 * 300.00131 * 9 8 6 38 38 H 1.09006 * 109.32706 * 311.52364 * 12 10 9 39 39 H 1.08996 * 109.33114 * 71.00159 * 12 10 9 40 40 H 1.08996 * 108.51807 * 175.91183 * 13 12 10 41 41 H 1.08999 * 108.39684 * 58.32401 * 13 12 10 42 42 H 1.08996 * 109.49055 * 325.06563 * 14 13 12 43 43 H 1.09000 * 109.50747 * 205.00394 * 14 13 12 44 44 H 1.08996 * 109.36438 * 147.92003 * 15 14 13 45 45 H 1.09001 * 109.26078 * 28.23651 * 15 14 13 46 46 H 1.09000 * 108.94750 * 279.87613 * 16 15 14 47 47 H 1.08995 * 108.87383 * 161.19548 * 16 15 14 48 48 H 0.96992 * 119.99969 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.47220 * 270.29179 * 28 27 26 50 50 H 1.08998 * 109.47148 * 30.29423 * 28 27 26 51 51 H 1.08998 * 109.47043 * 150.28986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2108 2.2095 1.0856 5 6 2.6934 3.4411 0.5832 6 6 3.0438 4.6371 1.3761 7 8 2.9258 4.6203 2.5859 8 7 3.4945 5.7469 0.7582 9 6 3.8415 6.9333 1.5445 10 6 4.3213 8.0436 0.6077 11 1 3.4994 8.3551 -0.0369 12 6 4.8057 9.2523 1.4460 13 6 5.0165 10.4228 0.5813 14 6 6.1025 10.2368 -0.4738 15 6 5.5103 9.5640 -1.6876 16 6 5.6673 8.0367 -1.5751 17 7 5.4105 7.5504 -0.2053 18 6 6.2377 6.5922 0.3169 19 1 6.3907 6.5343 1.3844 20 6 6.8795 5.6951 -0.5259 21 7 6.4704 5.5515 -1.7686 22 14 8.3240 4.6919 0.1037 23 1 7.8394 3.3715 0.5802 24 1 9.3043 4.4928 -0.9938 25 1 8.9767 5.4139 1.2254 26 7 2.7659 3.3199 -0.7273 27 7 2.3889 2.1444 -1.0829 28 6 2.3462 1.6605 -2.4650 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0242 1.9526 2.1179 35 1 3.5883 5.7604 -0.2071 36 1 4.6353 6.6832 2.2485 37 1 2.9638 7.2752 2.0930 38 1 4.0558 9.4921 2.2000 39 1 5.7422 8.9959 1.9412 40 1 5.2852 11.2727 1.2086 41 1 4.0780 10.6504 0.0757 42 1 6.9016 9.6165 -0.0678 43 1 6.5052 11.2092 -0.7572 44 1 6.0242 9.9153 -2.5823 45 1 4.4517 9.8145 -1.7569 46 1 6.6822 7.7630 -1.8634 47 1 4.9647 7.5588 -2.2578 48 1 6.9191 4.9250 -2.3575 49 1 1.3704 1.8819 -2.8975 50 1 3.1227 2.1561 -3.0476 51 1 2.5137 0.5836 -2.4783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969167389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:03 Heat of formation + Delta-G solvation = 34.420096 kcal Electronic energy + Delta-G solvation = -30538.049901 eV Core-core repulsion = 26666.640491 eV Total energy + Delta-G solvation = -3871.409410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.63438 -40.55473 -39.45229 -36.00279 -35.32845 -35.17105 -34.29027 -33.18144 -32.46297 -30.27985 -29.14856 -28.08385 -27.08928 -25.21150 -24.63682 -24.31976 -23.01142 -21.80892 -21.28600 -20.78917 -20.28603 -18.48836 -17.83610 -17.40368 -17.25958 -17.19038 -16.51575 -16.21298 -15.95305 -15.61040 -15.40725 -15.21800 -15.10037 -14.81966 -14.45764 -14.31330 -14.12151 -13.77830 -13.63137 -13.44296 -13.38984 -13.24343 -13.11873 -12.91818 -12.83886 -12.71325 -12.45902 -12.38499 -12.01477 -11.98252 -11.63182 -11.53920 -11.39562 -11.32806 -11.21503 -11.19312 -10.88541 -10.35303 -10.15286 -9.89139 -9.72460 -8.52705 -7.78640 -5.20446 0.63663 1.15496 1.36340 1.41475 1.46962 1.63902 2.37400 2.52459 2.56552 3.36771 3.43640 3.60919 3.64066 3.99730 4.04941 4.09212 4.13511 4.28168 4.31230 4.41973 4.44557 4.47973 4.52416 4.55653 4.61450 4.65083 4.67012 4.72955 4.82012 4.84021 5.01697 5.06821 5.07531 5.13643 5.20474 5.26226 5.27459 5.36241 5.39325 5.41484 5.43411 5.56623 5.64447 5.69037 5.77412 5.80067 5.90100 5.95344 6.47949 6.65268 7.01770 7.27992 7.32800 8.02025 8.40581 9.25071 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.003852 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.017575 B = 7266.339754 C = 7980.371760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.023 3.977 4 C -0.206 4.206 5 C -0.043 4.043 6 C 0.590 3.410 7 O -0.588 6.588 8 N -0.677 5.677 9 C 0.130 3.870 10 C 0.173 3.827 11 H 0.053 0.947 12 C -0.127 4.127 13 C -0.100 4.100 14 C -0.103 4.103 15 C -0.132 4.132 16 C 0.192 3.808 17 N -0.587 5.587 18 C -0.235 4.235 19 H 0.047 0.953 20 C -0.024 4.024 21 N -0.912 5.912 22 Si 0.928 3.072 23 H -0.305 1.305 24 H -0.290 1.290 25 H -0.278 1.278 26 N -0.275 5.275 27 N -0.279 5.279 28 C 0.074 3.926 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.411 0.589 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.038 0.962 47 H -0.003 1.003 48 H 0.243 0.757 49 H 0.106 0.894 50 H 0.087 0.913 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.534 -5.364 -2.467 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.102 4.102 4 C -0.235 4.235 5 C -0.201 4.201 6 C 0.376 3.624 7 O -0.469 6.469 8 N -0.324 5.324 9 C 0.006 3.994 10 C 0.066 3.934 11 H 0.071 0.929 12 C -0.167 4.167 13 C -0.137 4.137 14 C -0.141 4.141 15 C -0.170 4.170 16 C 0.067 3.933 17 N -0.310 5.310 18 C -0.366 4.366 19 H 0.065 0.935 20 C -0.221 4.221 21 N -0.557 5.557 22 Si 0.759 3.241 23 H -0.234 1.234 24 H -0.217 1.217 25 H -0.203 1.203 26 N -0.111 5.111 27 N -0.068 5.068 28 C -0.064 4.064 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.179 0.821 35 H 0.247 0.753 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.015 0.985 48 H 0.053 0.947 49 H 0.124 0.876 50 H 0.106 0.894 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.251 -4.853 -2.897 12.591 hybrid contribution 1.222 -1.056 0.542 1.704 sum -10.029 -5.909 -2.355 11.876 Atomic orbital electron populations 1.21730 0.93009 1.03323 1.01977 1.20298 0.97080 0.85864 1.05466 1.21965 1.04202 0.98247 0.85757 1.21646 1.08776 0.92435 1.00603 1.21922 1.10114 0.97482 0.90622 1.17234 0.77051 0.82048 0.86086 1.90656 1.57982 1.83869 1.14352 1.45634 1.62424 1.12430 1.11897 1.21574 0.98563 0.85149 0.94160 1.20682 0.89762 0.91623 0.91364 0.92892 1.21269 1.00953 0.96033 0.98487 1.20263 0.98716 0.97394 0.97361 1.20907 0.98376 0.99181 0.95607 1.21938 1.00415 0.96498 0.98200 1.20745 0.98472 0.89999 0.84092 1.43756 1.30230 1.43511 1.13470 1.18928 1.19841 1.06595 0.91206 0.93527 1.25251 1.01763 0.98243 0.96861 1.70140 1.41095 1.38108 1.06397 0.85883 0.81847 0.78973 0.77414 1.23356 1.21658 1.20300 1.73678 1.18200 1.04424 1.14816 1.45812 1.44072 1.07354 1.09550 1.22552 1.05770 1.02650 0.75435 0.92852 0.89424 0.93228 0.88194 0.88307 0.82146 0.75313 0.93694 0.91230 0.90741 0.93808 0.91707 0.92096 0.93898 0.91658 0.91965 0.92329 0.94355 0.98452 0.94749 0.87591 0.89376 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.13 16 2 C -0.05 -0.75 6.21 29.85 0.19 -0.56 16 3 C 0.02 0.63 6.17 41.40 0.26 0.88 16 4 C -0.21 -7.18 10.73 22.41 0.24 -6.94 16 5 C -0.04 -1.81 7.13 42.45 0.30 -1.51 16 6 C 0.59 27.61 7.82 86.75 0.68 28.29 16 7 O -0.59 -29.39 16.93 -3.94 -0.07 -29.45 16 8 N -0.68 -30.76 4.71 -466.09 -2.20 -32.96 16 9 C 0.13 5.42 4.52 86.38 0.39 5.81 16 10 C 0.17 6.79 2.19 45.99 0.10 6.89 16 11 H 0.05 2.00 8.06 -2.39 -0.02 1.98 16 12 C -0.13 -4.21 5.06 29.38 0.15 -4.06 16 13 C -0.10 -2.91 5.16 28.60 0.15 -2.76 16 14 C -0.10 -3.36 5.51 29.76 0.16 -3.19 16 15 C -0.13 -4.60 5.71 30.23 0.17 -4.43 16 16 C 0.19 8.71 4.66 86.49 0.40 9.11 16 17 N -0.59 -27.06 1.77 -674.23 -1.20 -28.25 16 18 C -0.23 -12.40 7.62 84.03 0.64 -11.76 16 19 H 0.05 2.60 6.74 -2.91 -0.02 2.58 16 20 C -0.02 -1.34 4.85 84.86 0.41 -0.93 16 21 N -0.91 -51.42 11.14 21.65 0.24 -51.18 16 22 Si 0.93 46.62 29.58 68.60 2.03 48.65 16 23 H -0.31 -15.99 7.11 99.48 0.71 -15.28 16 24 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 25 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 26 N -0.27 -10.99 11.67 -48.18 -0.56 -11.56 16 27 N -0.28 -8.32 3.70 -355.93 -1.32 -9.63 16 28 C 0.07 1.37 11.11 127.77 1.42 2.78 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 1.03 6.86 -2.39 -0.02 1.01 16 33 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.16 5.20 8.06 -2.91 -0.02 5.17 16 35 H 0.41 19.89 7.80 -92.71 -0.72 19.16 16 36 H 0.04 2.08 6.84 -2.38 -0.02 2.07 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.11 8.11 -2.38 -0.02 2.09 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.64 7.35 -2.39 -0.02 1.62 16 42 H 0.04 1.68 7.48 -2.39 -0.02 1.66 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.89 7.31 -2.39 -0.02 1.87 16 46 H 0.04 1.98 6.46 -2.39 -0.02 1.97 16 47 H 0.00 -0.13 8.02 -2.39 -0.02 -0.15 16 48 H 0.24 13.65 8.31 -92.71 -0.77 12.88 16 49 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.13 1.35 6.87 -2.39 -0.02 1.33 16 Total: -1.00 -71.74 399.01 3.50 -68.24 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.19 Total: 29.64 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.37 Total: 16.50 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -5.03 Total: -133.58 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.07 Total: -29.45 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.74 3.50 -68.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969167389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.660 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds