Wall clock time and date at job start Tue Mar 31 2020 18:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46767 * 2 1 4 4 N 1.30491 * 125.65516 * 270.27410 * 3 2 1 5 5 C 1.34129 * 109.26108 * 180.14962 * 4 3 2 6 6 C 1.34663 * 108.01527 * 359.61523 * 5 4 3 7 7 N 1.35044 * 125.64838 * 90.00151 * 3 2 1 8 8 C 1.46508 * 126.39747 * 359.97438 * 7 3 2 9 9 H 1.09003 * 109.47153 * 359.97438 * 8 7 3 10 10 C 1.53001 * 109.47427 * 239.97699 * 8 7 3 11 11 C 1.52999 * 109.46989 * 119.97634 * 8 7 3 12 12 C 1.50698 * 109.47087 * 185.00131 * 11 8 7 13 13 O 1.21279 * 119.99818 * 359.97438 * 12 11 8 14 14 N 1.34779 * 119.99753 * 179.97438 * 12 11 8 15 15 C 1.47020 * 125.65255 * 359.69198 * 14 12 11 16 16 C 1.54334 * 107.26640 * 178.84584 * 15 14 12 17 17 C 1.55149 * 103.02115 * 338.14227 * 16 15 14 18 18 H 1.09001 * 111.00504 * 277.22822 * 17 16 15 19 19 N 1.46502 * 111.03494 * 153.39167 * 17 16 15 20 20 C 1.46499 * 120.00359 * 307.78716 * 19 17 16 21 21 C 1.36942 * 119.99870 * 127.78626 * 19 17 16 22 22 H 1.07999 * 119.99730 * 328.50240 * 21 19 17 23 23 C 1.38807 * 119.99929 * 148.50860 * 21 19 17 24 24 N 1.31618 * 119.99836 * 153.83103 * 23 21 19 25 25 Si 1.86795 * 120.00306 * 333.82711 * 23 21 19 26 26 H 1.48497 * 109.47075 * 94.89179 * 25 23 21 27 27 H 1.48492 * 109.47489 * 214.89456 * 25 23 21 28 28 H 1.48507 * 109.47144 * 334.89507 * 25 23 21 29 29 C 1.47430 * 125.64632 * 179.97438 * 14 12 11 30 30 H 1.08995 * 109.47251 * 60.00288 * 1 2 3 31 31 H 1.09004 * 109.46661 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47158 * 299.99392 * 1 2 3 33 33 H 1.09001 * 109.47541 * 240.00465 * 2 1 3 34 34 H 1.09003 * 109.46976 * 119.99945 * 2 1 3 35 35 H 1.07995 * 125.99193 * 179.88513 * 5 4 3 36 36 H 1.08010 * 126.58751 * 180.24854 * 6 5 4 37 37 H 1.09003 * 109.46868 * 300.00187 * 10 8 7 38 38 H 1.09002 * 109.46522 * 59.99649 * 10 8 7 39 39 H 1.08996 * 109.47205 * 180.02562 * 10 8 7 40 40 H 1.08999 * 109.47492 * 305.00418 * 11 8 7 41 41 H 1.09005 * 109.46915 * 65.00070 * 11 8 7 42 42 H 1.08993 * 109.87987 * 298.39744 * 15 14 12 43 43 H 1.09008 * 109.88184 * 59.55948 * 15 14 12 44 44 H 1.08998 * 110.84915 * 219.67219 * 16 15 14 45 45 H 1.09007 * 110.66267 * 96.52771 * 16 15 14 46 46 H 1.08996 * 109.47344 * 95.54081 * 20 19 17 47 47 H 1.09003 * 109.47452 * 215.54649 * 20 19 17 48 48 H 1.09007 * 109.46899 * 335.54619 * 20 19 17 49 49 H 0.97001 * 119.99950 * 179.97438 * 24 23 21 50 50 H 1.08994 * 110.36650 * 322.93473 * 29 14 12 51 51 H 1.08999 * 110.36319 * 85.25414 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2810 2.1397 -1.0603 5 6 2.7147 3.3512 -0.6817 6 6 2.7274 3.3872 0.6644 7 7 2.2946 2.1629 1.0974 8 6 2.1436 1.7373 2.4911 9 1 1.7797 0.7102 2.5200 10 6 1.1427 2.6530 3.1985 11 6 3.4977 1.8186 3.1987 12 6 3.3690 1.2657 4.5947 13 8 2.2995 0.8482 4.9853 14 7 4.4426 1.2352 5.4090 15 6 5.7937 1.7005 5.0635 16 6 6.6810 1.4971 6.3098 17 6 5.6500 1.4457 7.4681 18 1 5.3694 2.4497 7.7863 19 7 6.1648 0.6651 8.5960 20 6 6.6809 -0.6881 8.3755 21 6 6.1637 1.2005 9.8564 22 1 6.2858 2.2651 9.9910 23 6 6.0058 0.3749 10.9610 24 7 6.4955 0.7362 12.1280 25 14 5.0981 -1.2489 10.7913 26 1 6.0767 -2.3407 10.5561 27 1 4.3391 -1.5244 12.0375 28 1 4.1568 -1.1724 9.6452 29 6 4.4578 0.7244 6.7919 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.9992 4.1580 -1.3409 36 1 3.0221 4.2218 1.2833 37 1 1.5066 3.6801 3.1697 38 1 0.1781 2.5950 2.6943 39 1 1.0308 2.3366 4.2355 40 1 4.2333 1.2365 2.6437 41 1 3.8199 2.8588 3.2481 42 1 6.1842 1.1182 4.2290 43 1 5.7655 2.7578 4.7994 44 1 7.3655 2.3353 6.4397 45 1 7.2313 0.5587 6.2412 46 1 7.7636 -0.6492 8.2559 47 1 6.4322 -1.3158 9.2313 48 1 6.2308 -1.1064 7.4751 49 1 6.3848 0.1594 12.9000 50 1 3.5260 0.9745 7.2989 51 1 4.6152 -0.3542 6.7961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971561836.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:15 Heat of formation + Delta-G solvation = 36.786760 kcal Electronic energy + Delta-G solvation = -29463.852540 eV Core-core repulsion = 25592.545756 eV Total energy + Delta-G solvation = -3871.306784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.15756 -41.24307 -39.24268 -36.84659 -36.48892 -34.71087 -33.86077 -32.16252 -31.52499 -29.98796 -29.53323 -28.72075 -28.07669 -25.56180 -24.79613 -24.07799 -23.59698 -21.99687 -21.03498 -20.39935 -19.96612 -19.04501 -18.60299 -17.88164 -17.49262 -17.05461 -16.65807 -16.19796 -16.07472 -15.68973 -15.40566 -15.14547 -14.82832 -14.69171 -14.55956 -14.41429 -14.37576 -14.28873 -14.16039 -13.96224 -13.69291 -13.51448 -13.27320 -13.20025 -12.85034 -12.57825 -12.56069 -12.53355 -12.41880 -12.28838 -12.22108 -12.05352 -11.97769 -11.59839 -11.45190 -11.10987 -10.83776 -10.63182 -10.58531 -9.71353 -9.27332 -8.91233 -8.24967 -5.55536 1.10943 1.26197 1.40187 1.48588 1.50341 1.57385 2.07452 2.20858 2.37457 2.98713 3.27619 3.36007 3.43395 3.52198 3.66454 3.82562 3.85738 3.97255 4.07535 4.14732 4.23133 4.27168 4.34503 4.37607 4.41497 4.44204 4.49414 4.50291 4.65208 4.67574 4.69662 4.73157 4.77189 4.85208 4.87578 4.94328 4.97222 4.98917 5.07325 5.10832 5.19388 5.25974 5.26700 5.34658 5.43713 5.85838 5.88571 6.11697 6.25337 6.49439 6.89361 7.04525 7.18799 7.57834 7.96261 8.94740 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.002404 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.411532 B =11645.864186 C =12132.240525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C 0.196 3.804 4 N -0.527 5.527 5 C -0.053 4.053 6 C -0.048 4.048 7 N -0.446 5.446 8 C 0.151 3.849 9 H 0.104 0.896 10 C -0.159 4.159 11 C -0.132 4.132 12 C 0.529 3.471 13 O -0.579 6.579 14 N -0.612 5.612 15 C 0.105 3.895 16 C -0.139 4.139 17 C 0.164 3.836 18 H 0.075 0.925 19 N -0.608 5.608 20 C 0.108 3.892 21 C -0.260 4.260 22 H 0.054 0.946 23 C -0.020 4.020 24 N -0.941 5.941 25 Si 0.941 3.059 26 H -0.272 1.272 27 H -0.313 1.313 28 H -0.268 1.268 29 C 0.091 3.909 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.183 0.817 36 H 0.200 0.800 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.034 0.966 47 H 0.019 0.981 48 H 0.065 0.935 49 H 0.263 0.737 50 H 0.048 0.952 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 2.514 -25.905 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.066 4.066 4 N -0.247 5.247 5 C -0.200 4.200 6 C -0.181 4.181 7 N -0.129 5.129 8 C 0.048 3.952 9 H 0.122 0.878 10 C -0.217 4.217 11 C -0.172 4.172 12 C 0.318 3.682 13 O -0.459 6.459 14 N -0.345 5.345 15 C -0.016 4.016 16 C -0.178 4.178 17 C 0.055 3.945 18 H 0.093 0.907 19 N -0.331 5.331 20 C -0.036 4.036 21 C -0.389 4.389 22 H 0.071 0.929 23 C -0.217 4.217 24 N -0.585 5.585 25 Si 0.771 3.229 26 H -0.199 1.199 27 H -0.242 1.242 28 H -0.193 1.193 29 C -0.034 4.034 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.200 0.800 36 H 0.217 0.783 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.037 0.963 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.339 1.975 -26.252 27.079 hybrid contribution -0.368 -0.400 1.655 1.742 sum -6.707 1.574 -24.597 25.543 Atomic orbital electron populations 1.21698 0.93507 1.03156 1.01636 1.20079 0.96828 0.86597 1.04586 1.23636 1.04146 0.97384 0.81421 1.70207 1.19521 1.05516 1.29441 1.22651 1.07162 0.96296 0.93892 1.23064 1.08054 0.90329 0.96666 1.45632 1.48538 1.11859 1.06826 1.21087 0.95676 1.01191 0.77248 0.87831 1.22187 0.98320 0.99502 1.01702 1.21899 0.98588 1.05518 0.91195 1.20458 0.82192 0.78317 0.87222 1.90695 1.28025 1.49996 1.77208 1.48534 1.10763 1.61465 1.13742 1.22266 0.79888 1.01444 0.98043 1.23037 0.97815 1.03883 0.93085 1.21687 0.91242 0.94497 0.87025 0.90726 1.44104 1.70369 1.14741 1.03842 1.21386 0.97824 0.85540 0.98851 1.18737 1.44187 0.93527 0.82466 0.92873 1.25887 0.99373 1.01590 0.94860 1.70011 1.45840 1.40714 1.01946 0.85957 0.79651 0.81388 0.75896 1.19907 1.24192 1.19288 1.22736 1.00278 0.98490 0.81910 0.92900 0.89945 0.93396 0.88398 0.89469 0.80024 0.78341 0.90836 0.92167 0.90361 0.86606 0.85635 0.88799 0.88645 0.88923 0.90382 0.94800 0.96302 0.91605 0.92748 0.93302 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.04 -0.63 6.08 29.85 0.18 -0.45 16 3 C 0.20 3.88 7.16 138.13 0.99 4.87 16 4 N -0.53 -12.33 11.25 -188.14 -2.12 -14.44 16 5 C -0.05 -0.99 11.87 83.52 0.99 0.00 16 6 C -0.05 -0.73 10.70 83.09 0.89 0.16 16 7 N -0.45 -7.41 2.61 -491.89 -1.28 -8.70 16 8 C 0.15 2.40 2.64 44.99 0.12 2.52 16 9 H 0.10 1.83 6.48 -2.39 -0.02 1.81 16 10 C -0.16 -2.70 8.99 71.98 0.65 -2.05 16 11 C -0.13 -1.86 4.38 29.85 0.13 -1.73 16 12 C 0.53 12.25 7.57 87.66 0.66 12.92 16 13 O -0.58 -17.97 14.22 -3.03 -0.04 -18.01 16 14 N -0.61 -14.67 3.33 -811.82 -2.70 -17.37 16 15 C 0.11 1.77 6.49 86.73 0.56 2.33 16 16 C -0.14 -3.24 6.50 31.78 0.21 -3.03 16 17 C 0.16 5.53 3.53 46.37 0.16 5.70 16 18 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 19 N -0.61 -26.32 2.62 -695.07 -1.82 -28.14 16 20 C 0.11 4.20 8.33 127.77 1.06 5.26 16 21 C -0.26 -13.99 9.89 84.03 0.83 -13.16 16 22 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 23 C -0.02 -1.14 5.29 84.86 0.45 -0.69 16 24 N -0.94 -57.32 13.97 21.65 0.30 -57.01 16 25 Si 0.94 45.59 25.07 68.60 1.72 47.31 16 26 H -0.27 -12.40 6.62 99.48 0.66 -11.75 16 27 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 29 C 0.09 2.96 6.46 86.85 0.56 3.53 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.12 7.08 -2.39 -0.02 1.11 16 35 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.07 1.02 7.95 -2.39 -0.02 1.00 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.72 5.95 -2.39 -0.01 1.70 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.13 1.22 8.09 -2.38 -0.02 1.20 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.08 1.83 6.99 -2.38 -0.02 1.82 16 46 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.02 0.82 2.55 -2.39 -0.01 0.82 16 48 H 0.07 2.14 6.37 -2.38 -0.02 2.12 16 49 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 50 H 0.05 1.84 8.04 -2.39 -0.02 1.82 16 51 H 0.06 1.93 6.43 -2.39 -0.02 1.92 16 Total: -1.00 -72.87 397.46 4.08 -68.78 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.86 Total: 12.66 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 9.16 Total: 14.92 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -7.61 Total: -125.66 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.04 Total: -18.01 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.72 Total: 47.31 kcal Total: -72.87 4.08 -68.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971561836.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.572 kcal (2) G-P(sol) polarization free energy of solvation -72.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds