Wall clock time and date at job start Tue Mar 31 2020 18:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46699 * 2 1 4 4 N 1.30495 * 125.65164 * 270.03682 * 3 2 1 5 5 C 1.34132 * 109.26032 * 179.97438 * 4 3 2 6 6 C 1.34673 * 108.01526 * 359.73597 * 5 4 3 7 7 N 1.35040 * 125.64844 * 90.00257 * 3 2 1 8 8 C 1.46501 * 126.40155 * 0.03078 * 7 3 2 9 9 H 1.09005 * 109.46458 * 0.02562 * 8 7 3 10 10 C 1.52995 * 109.47510 * 240.00410 * 8 7 3 11 11 C 1.53003 * 109.47140 * 119.99864 * 8 7 3 12 12 C 1.50700 * 109.47025 * 185.00270 * 11 8 7 13 13 O 1.21285 * 119.99916 * 0.02562 * 12 11 8 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 8 15 15 C 1.47024 * 125.64841 * 359.95630 * 14 12 11 16 16 C 1.54365 * 107.28955 * 181.13286 * 15 14 12 17 17 C 1.55161 * 102.92232 * 22.13662 * 16 15 14 18 18 H 1.09003 * 111.00044 * 82.64310 * 17 16 15 19 19 N 1.46495 * 111.00397 * 206.45487 * 17 16 15 20 20 C 1.46506 * 120.00153 * 55.41931 * 19 17 16 21 21 C 1.36941 * 120.00102 * 235.41513 * 19 17 16 22 22 H 1.07999 * 119.99660 * 340.49732 * 21 19 17 23 23 C 1.38809 * 119.99975 * 160.21496 * 21 19 17 24 24 N 1.31625 * 120.00106 * 347.28043 * 23 21 19 25 25 Si 1.86803 * 119.99919 * 167.27897 * 23 21 19 26 26 H 1.48493 * 109.46809 * 60.00068 * 25 23 21 27 27 H 1.48508 * 109.46911 * 180.02562 * 25 23 21 28 28 H 1.48491 * 109.46885 * 299.99872 * 25 23 21 29 29 C 1.47426 * 125.65054 * 180.02562 * 14 12 11 30 30 H 1.08997 * 109.47195 * 60.00128 * 1 2 3 31 31 H 1.09007 * 109.47051 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47577 * 299.99927 * 1 2 3 33 33 H 1.08998 * 109.47466 * 240.00557 * 2 1 3 34 34 H 1.08997 * 109.47195 * 119.99872 * 2 1 3 35 35 H 1.07997 * 125.99472 * 180.02562 * 5 4 3 36 36 H 1.07999 * 126.59133 * 180.28596 * 6 5 4 37 37 H 1.08997 * 109.47393 * 180.02562 * 10 8 7 38 38 H 1.08997 * 109.47004 * 299.99690 * 10 8 7 39 39 H 1.09001 * 109.47383 * 59.99448 * 10 8 7 40 40 H 1.09001 * 109.46753 * 65.00360 * 11 8 7 41 41 H 1.08995 * 109.47455 * 305.00513 * 11 8 7 42 42 H 1.09006 * 109.88314 * 300.51444 * 15 14 12 43 43 H 1.08997 * 109.88111 * 61.52311 * 15 14 12 44 44 H 1.09004 * 110.70526 * 263.79843 * 16 15 14 45 45 H 1.08997 * 110.76000 * 140.50623 * 16 15 14 46 46 H 1.08992 * 109.47225 * 264.83136 * 20 19 17 47 47 H 1.09001 * 109.47060 * 24.83222 * 20 19 17 48 48 H 1.09003 * 109.46925 * 144.82670 * 20 19 17 49 49 H 0.96999 * 120.00118 * 179.97438 * 24 23 21 50 50 H 1.09005 * 110.36536 * 36.99497 * 29 14 12 51 51 H 1.09000 * 110.36647 * 274.67191 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2850 2.1382 -1.0604 5 6 2.7136 3.3516 -0.6819 6 6 2.7212 3.3894 0.6643 7 7 2.2945 2.1629 1.0973 8 6 2.1447 1.7370 2.4910 9 1 1.7825 0.7093 2.5199 10 6 1.1430 2.6514 3.1990 11 6 3.4991 1.8199 3.1981 12 6 3.3716 1.2666 4.5940 13 8 2.3029 0.8469 4.9848 14 7 4.4453 1.2383 5.4083 15 6 5.7942 1.7113 5.0644 16 6 6.6968 1.4541 6.2900 17 6 5.9378 0.3353 7.0513 18 1 6.1621 -0.6449 6.6304 19 7 6.2461 0.3720 8.4829 20 6 6.0335 1.6040 9.2467 21 6 6.7330 -0.7453 9.1074 22 1 6.6001 -1.7173 8.6559 23 6 7.4025 -0.6277 10.3177 24 7 7.7903 0.5560 10.7430 25 14 7.7529 -2.1495 11.3428 26 1 8.5912 -3.0919 10.5591 27 1 8.4733 -1.7573 12.5808 28 1 6.4722 -2.8088 11.7038 29 6 4.4619 0.7264 6.7907 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.9978 4.1585 -1.3410 36 1 3.0105 4.2258 1.2833 37 1 1.0319 2.3347 4.2360 38 1 1.5056 3.6788 3.1701 39 1 0.1781 2.5923 2.6953 40 1 3.8200 2.8604 3.2475 41 1 4.2351 1.2386 2.6427 42 1 6.1725 1.1594 4.2039 43 1 5.7667 2.7772 4.8380 44 1 6.7781 2.3513 6.9038 45 1 7.6823 1.1082 5.9782 46 1 6.9667 2.1645 9.2992 47 1 5.2729 2.2100 8.7544 48 1 5.7024 1.3540 10.2547 49 1 8.2578 0.6381 11.5889 50 1 3.8165 -0.1475 6.8795 51 1 4.1472 1.5038 7.4869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971561838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:26 Heat of formation + Delta-G solvation = 49.120136 kcal Electronic energy + Delta-G solvation = -29305.088606 eV Core-core repulsion = 25434.316637 eV Total energy + Delta-G solvation = -3870.771969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.40036 -40.09622 -37.85800 -35.77228 -34.93188 -34.05683 -31.89581 -31.01046 -29.94563 -28.85157 -28.77712 -27.37520 -26.14624 -24.24535 -23.89879 -22.94089 -22.38659 -21.19714 -19.60109 -19.41128 -18.98135 -17.73366 -17.16374 -16.58192 -16.12480 -15.79869 -15.49747 -15.03366 -14.88610 -14.53583 -14.29777 -13.98657 -13.74456 -13.63058 -13.49792 -13.33959 -13.24947 -12.81356 -12.59543 -12.57209 -12.46067 -12.21213 -11.93164 -11.87807 -11.77156 -11.54836 -11.44259 -11.31799 -11.00201 -10.85516 -10.59911 -10.53299 -10.35100 -10.19870 -9.99935 -9.94592 -9.86807 -9.71424 -8.66752 -8.54083 -8.50675 -6.93259 -5.83122 -3.28508 1.84979 2.41141 2.54789 2.97698 3.10396 3.33257 3.39172 3.40238 4.13964 4.16823 4.35356 4.40334 4.43646 4.59449 4.75852 4.87728 4.89924 4.97902 5.03854 5.12920 5.16082 5.19330 5.26008 5.32983 5.38547 5.41686 5.47162 5.50152 5.53999 5.60235 5.64241 5.73481 5.79682 5.88376 5.89862 5.93081 6.15691 6.18047 6.26210 6.38478 6.51969 6.59471 6.68385 6.75894 7.00036 7.30009 7.57783 7.61656 7.71683 7.94421 8.10412 8.26413 9.11487 9.73648 10.20231 11.21630 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.002187 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.682709 B =12799.672760 C =13139.952280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.056 4.056 7 N -0.448 5.448 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.165 4.165 11 C -0.147 4.147 12 C 0.530 3.470 13 O -0.545 6.545 14 N -0.608 5.608 15 C 0.100 3.900 16 C -0.152 4.152 17 C 0.174 3.826 18 H 0.078 0.922 19 N -0.586 5.586 20 C 0.161 3.839 21 C -0.261 4.261 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.907 5.907 25 Si 0.908 3.092 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.084 3.916 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.031 0.969 47 H 0.000 1.000 48 H 0.048 0.952 49 H 0.254 0.746 50 H 0.074 0.926 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 5.204 -18.820 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.212 5.212 5 C -0.179 4.179 6 C -0.189 4.189 7 N -0.130 5.130 8 C 0.043 3.957 9 H 0.129 0.871 10 C -0.222 4.222 11 C -0.187 4.187 12 C 0.318 3.682 13 O -0.423 6.423 14 N -0.342 5.342 15 C -0.023 4.023 16 C -0.192 4.192 17 C 0.063 3.937 18 H 0.096 0.904 19 N -0.306 5.306 20 C 0.017 3.983 21 C -0.390 4.390 22 H 0.089 0.911 23 C -0.195 4.195 24 N -0.552 5.552 25 Si 0.738 3.262 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.210 1.210 29 C -0.040 4.040 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.050 0.950 47 H 0.018 0.982 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.092 0.908 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.285 4.733 -19.098 22.202 hybrid contribution 0.656 -0.111 1.431 1.578 sum -9.629 4.622 -17.666 20.644 Atomic orbital electron populations 1.21739 0.93886 1.02365 1.02490 1.19989 0.96535 0.87477 1.04041 1.23273 1.04010 0.96640 0.81356 1.70234 1.18367 1.04318 1.28276 1.22253 1.06677 0.96237 0.92750 1.22612 1.09531 0.89994 0.96719 1.45627 1.48736 1.11567 1.07109 1.21182 0.95516 1.01574 0.77391 0.87071 1.22271 0.98081 0.98747 1.03112 1.21956 0.98398 1.04069 0.94301 1.19770 0.83138 0.79225 0.86081 1.90686 1.26604 1.48610 1.76447 1.48478 1.09388 1.61015 1.15282 1.22118 0.82323 0.98651 0.99204 1.23249 0.98617 1.02081 0.95272 1.21384 0.89763 0.96496 0.86079 0.90376 1.43844 1.74163 1.11111 1.01523 1.20842 0.96463 0.86552 0.94487 1.19203 1.30255 0.86081 1.03479 0.91122 1.24978 0.98177 0.96797 0.99529 1.70075 1.41584 1.21638 1.21889 0.86280 0.77991 0.82234 0.79698 1.20887 1.21578 1.20982 1.23050 1.01319 0.99245 0.80359 0.91935 0.91532 0.92737 0.88719 0.90343 0.81528 0.81231 0.88261 0.92277 0.91982 0.88244 0.88286 0.91809 0.91979 0.90433 0.90387 0.95023 0.98204 0.93355 0.93562 0.90796 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.04 -0.35 6.08 -27.88 -0.17 -0.52 16 3 C 0.21 2.30 7.16 -155.42 -1.11 1.18 16 4 N -0.49 -6.21 11.25 -10.81 -0.12 -6.33 16 5 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 6 C -0.06 -0.52 10.70 -16.56 -0.18 -0.70 16 7 N -0.45 -4.43 2.61 -106.83 -0.28 -4.71 16 8 C 0.15 1.39 2.64 -67.93 -0.18 1.21 16 9 H 0.11 1.10 6.48 -51.93 -0.34 0.77 16 10 C -0.16 -1.55 8.99 37.15 0.33 -1.22 16 11 C -0.15 -1.39 4.38 -27.88 -0.12 -1.51 16 12 C 0.53 7.00 7.57 -10.99 -0.08 6.92 16 13 O -0.54 -8.73 14.22 5.55 0.08 -8.65 16 14 N -0.61 -8.52 3.33 -170.50 -0.57 -9.08 16 15 C 0.10 1.20 6.49 -3.04 -0.02 1.18 16 16 C -0.15 -2.33 6.53 -24.87 -0.16 -2.49 16 17 C 0.17 3.23 3.54 -65.79 -0.23 3.00 16 18 H 0.08 1.47 7.93 -51.93 -0.41 1.06 16 19 N -0.59 -13.68 2.97 -171.04 -0.51 -14.19 16 20 C 0.16 3.71 7.65 59.85 0.46 4.17 16 21 C -0.26 -6.81 9.66 -15.06 -0.15 -6.95 16 22 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 23 C 0.00 0.10 5.12 -17.43 -0.09 0.01 16 24 N -0.91 -25.31 10.50 55.49 0.58 -24.73 16 25 Si 0.91 21.15 29.57 -169.99 -5.03 16.12 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C 0.08 1.44 6.46 -2.54 -0.02 1.42 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.59 7.08 -51.93 -0.37 0.23 16 35 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.10 1.13 5.95 -51.93 -0.31 0.82 16 38 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.28 7.16 -51.93 -0.37 0.91 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 47 H 0.00 -0.01 6.25 -51.93 -0.32 -0.33 16 48 H 0.05 1.23 7.11 -51.93 -0.37 0.86 16 49 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 50 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 51 H 0.07 1.27 6.22 -51.93 -0.32 0.95 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -30.89 401.68 -9.99 -40.89 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.65 Total: 0.22 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.56 Total: 4.41 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.89 Total: -59.04 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.89 -9.99 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971561838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.007 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds