Wall clock time and date at job start Tue Mar 31 2020 20:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47212 * 2 1 4 4 C 1.50704 * 109.46845 * 119.99515 * 2 1 3 5 5 N 1.30492 * 125.65103 * 300.04502 * 4 2 1 6 6 C 1.34132 * 109.25748 * 179.97438 * 5 4 2 7 7 C 1.34673 * 108.01933 * 359.73122 * 6 5 4 8 8 N 1.35043 * 125.64675 * 119.99840 * 4 2 1 9 9 C 1.46499 * 126.39916 * 0.04307 * 8 4 2 10 10 C 1.52994 * 109.47439 * 84.99695 * 9 8 4 11 11 C 1.50700 * 109.47051 * 180.02562 * 10 9 8 12 12 O 1.21272 * 120.00364 * 359.97438 * 11 10 9 13 13 N 1.34788 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.64803 * 0.03394 * 13 11 10 15 15 C 1.54909 * 104.83100 * 204.09353 * 14 13 11 16 16 C 1.55155 * 101.58381 * 322.99336 * 15 14 13 17 17 H 1.08996 * 110.87309 * 277.06782 * 16 15 14 18 18 N 1.46501 * 110.72221 * 153.86313 * 16 15 14 19 19 C 1.46504 * 119.99665 * 306.47856 * 18 16 15 20 20 C 1.36934 * 120.00230 * 126.48042 * 18 16 15 21 21 H 1.07999 * 119.99748 * 341.15908 * 20 18 16 22 22 C 1.38808 * 119.99997 * 160.89079 * 20 18 16 23 23 N 1.31612 * 120.00099 * 346.74019 * 22 20 18 24 24 Si 1.86801 * 119.99632 * 166.74142 * 22 20 18 25 25 H 1.48496 * 109.47118 * 60.00288 * 24 22 20 26 26 H 1.48500 * 109.46895 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47384 * 299.99938 * 24 22 20 28 28 C 1.47017 * 125.64497 * 179.97438 * 13 11 10 29 29 H 1.09005 * 109.46691 * 59.99980 * 1 2 3 30 30 H 1.08993 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46957 * 300.00380 * 1 2 3 32 32 H 1.08999 * 109.47619 * 239.99643 * 2 1 3 33 33 H 1.08997 * 109.46770 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46713 * 299.99985 * 3 2 1 35 35 H 1.08999 * 109.47060 * 59.99891 * 3 2 1 36 36 H 1.08002 * 125.99523 * 179.97438 * 6 5 4 37 37 H 1.07997 * 126.59339 * 180.28414 * 7 6 5 38 38 H 1.09002 * 109.47081 * 324.99304 * 9 8 4 39 39 H 1.09004 * 109.47367 * 204.99907 * 9 8 4 40 40 H 1.09002 * 109.47303 * 59.99745 * 10 9 8 41 41 H 1.09003 * 109.46600 * 299.99778 * 10 9 8 42 42 H 1.08997 * 110.36898 * 322.93459 * 14 13 11 43 43 H 1.09004 * 110.36344 * 85.15409 * 14 13 11 44 44 H 1.09001 * 111.00778 * 204.91782 * 15 14 13 45 45 H 1.09003 * 111.00520 * 81.06685 * 15 14 13 46 46 H 1.08997 * 109.47363 * 264.80715 * 19 18 16 47 47 H 1.08992 * 109.47199 * 24.81360 * 19 18 16 48 48 H 1.09008 * 109.46866 * 144.81380 * 19 18 16 49 49 H 0.97007 * 119.99884 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.88416 * 59.55396 * 28 13 11 51 51 H 1.09008 * 110.01561 * 298.46409 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7853 -0.3623 2.4637 6 6 2.3924 -1.2214 3.2959 7 6 3.0354 -2.1400 2.5500 8 7 2.8119 -1.8130 1.2397 9 6 3.3191 -2.5288 0.0664 10 6 4.6108 -1.8662 -0.4163 11 6 5.1321 -2.6022 -1.6236 12 8 4.5301 -3.5625 -2.0551 13 7 6.2681 -2.1939 -2.2232 14 6 7.0970 -1.0489 -1.8045 15 6 7.8618 -0.6245 -3.0830 16 6 8.1487 -1.9982 -3.7449 17 1 9.0365 -2.4596 -3.3127 18 7 8.2957 -1.8541 -5.1954 19 6 7.2468 -1.1930 -5.9758 20 6 9.4134 -2.3374 -5.8217 21 1 10.3063 -2.5430 -5.2500 22 6 9.3969 -2.5683 -7.1903 23 7 8.2538 -2.5768 -7.8426 24 14 10.9973 -2.8670 -8.1064 25 1 11.6705 -4.0672 -7.5482 26 1 10.7096 -3.0865 -9.5466 27 1 11.8837 -1.6857 -7.9525 28 6 6.8864 -2.8174 -3.4024 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8935 -0.5139 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9564 0.8900 36 1 2.3666 -1.1854 4.3750 37 1 3.6173 -2.9732 2.9154 38 1 2.5746 -2.4961 -0.7290 39 1 3.5206 -3.5664 0.3329 40 1 5.3553 -1.8990 0.3791 41 1 4.4092 -0.8287 -0.6828 42 1 6.4663 -0.2331 -1.4514 43 1 7.7963 -1.3518 -1.0252 44 1 8.7896 -0.1109 -2.8310 45 1 7.2360 -0.0046 -3.7251 46 1 6.5698 -1.9435 -6.3838 47 1 6.6895 -0.5124 -5.3323 48 1 7.7008 -0.6312 -6.7922 49 1 8.2423 -2.7385 -8.7990 50 1 6.1909 -2.7946 -4.2414 51 1 7.1626 -3.8477 -3.1780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972476918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:01 Heat of formation + Delta-G solvation = 47.204113 kcal Electronic energy + Delta-G solvation = -29242.907965 eV Core-core repulsion = 25372.052911 eV Total energy + Delta-G solvation = -3870.855053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.36769 -39.95914 -37.69521 -35.59717 -35.00274 -34.89004 -31.88327 -30.72550 -29.77607 -28.97006 -27.97989 -27.39375 -26.13444 -25.06438 -23.26420 -22.86272 -22.45725 -21.38837 -19.41276 -19.25004 -19.12190 -17.69964 -17.15390 -16.54087 -16.24452 -15.87799 -15.50665 -15.00115 -14.90514 -14.52198 -14.43056 -13.87628 -13.67789 -13.58842 -13.45612 -13.32048 -13.14264 -12.76269 -12.66774 -12.42537 -12.31502 -12.24268 -11.96595 -11.78876 -11.68194 -11.59476 -11.45484 -11.17664 -10.97965 -10.86576 -10.65103 -10.49699 -10.36817 -10.12179 -10.01237 -9.95939 -9.88464 -9.67317 -8.63293 -8.54737 -8.45927 -6.93669 -5.81893 -3.27034 1.83168 2.44132 2.61477 2.98015 3.14990 3.33598 3.39483 3.40069 4.10488 4.34865 4.36137 4.40814 4.42813 4.60316 4.79972 4.86951 4.87949 4.95964 5.02080 5.07343 5.18985 5.24055 5.28676 5.41361 5.43419 5.46410 5.47785 5.50934 5.59199 5.61239 5.68443 5.71493 5.79723 5.89052 5.98315 5.99860 6.17909 6.23277 6.25873 6.39409 6.55211 6.59292 6.73934 6.76863 6.96997 7.31047 7.63375 7.64222 7.73009 7.94275 8.16612 8.27204 9.12206 9.74701 10.21564 11.22679 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.002232 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.116971 B =12541.993342 C =12877.411944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 C -0.139 4.139 4 C 0.215 3.785 5 N -0.488 5.488 6 C -0.031 4.031 7 C -0.059 4.059 8 N -0.454 5.454 9 C 0.119 3.881 10 C -0.151 4.151 11 C 0.527 3.473 12 O -0.546 6.546 13 N -0.609 5.609 14 C 0.100 3.900 15 C -0.154 4.154 16 C 0.173 3.827 17 H 0.079 0.921 18 N -0.586 5.586 19 C 0.161 3.839 20 C -0.262 4.262 21 H 0.072 0.928 22 C 0.003 3.997 23 N -0.906 5.906 24 Si 0.909 3.091 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.085 3.915 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.029 0.971 47 H 0.001 0.999 48 H 0.049 0.951 49 H 0.255 0.745 50 H 0.074 0.926 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 5.602 18.659 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.197 4.197 4 C -0.048 4.048 5 N -0.206 5.206 6 C -0.179 4.179 7 C -0.191 4.191 8 N -0.136 5.136 9 C -0.004 4.004 10 C -0.192 4.192 11 C 0.314 3.686 12 O -0.425 6.425 13 N -0.342 5.342 14 C -0.024 4.024 15 C -0.194 4.194 16 C 0.062 3.938 17 H 0.097 0.903 18 N -0.307 5.307 19 C 0.017 3.983 20 C -0.391 4.391 21 H 0.090 0.910 22 C -0.195 4.195 23 N -0.550 5.550 24 Si 0.738 3.262 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.210 1.210 28 C -0.039 4.039 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.185 0.815 37 H 0.190 0.810 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.048 0.952 47 H 0.019 0.981 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.092 0.908 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.940 5.615 18.342 22.083 hybrid contribution 1.471 -1.084 -0.670 1.946 sum -9.468 4.531 17.672 20.555 Atomic orbital electron populations 1.21774 0.93015 1.02175 1.02756 1.19604 0.96808 0.95894 0.90956 1.21776 1.00987 0.94125 1.02811 1.23247 0.96932 0.88952 0.95648 1.70179 1.23873 1.27573 0.99006 1.22271 1.01492 0.94602 0.99540 1.22730 1.08704 1.04801 0.82900 1.45507 1.38395 1.22914 1.06792 1.21603 0.95836 0.96459 0.86502 1.21954 0.98168 1.01486 0.97615 1.19854 0.79999 0.84452 0.84260 1.90728 1.57591 1.28317 1.65864 1.48563 1.23381 1.31400 1.30882 1.22362 0.93724 0.88012 0.98253 1.23356 1.00227 1.00569 0.95213 1.21337 0.94309 0.91719 0.86388 0.90331 1.43959 1.21153 1.65421 1.00138 1.20836 0.90483 0.94331 0.92673 1.19208 0.89751 1.38990 0.91194 0.91042 1.24997 0.96887 1.00101 0.97562 1.70086 1.23373 1.53202 1.08381 0.86276 0.82870 0.78170 0.78850 1.20895 1.21590 1.20998 1.22994 0.97088 0.97482 0.86353 0.91731 0.92786 0.91373 0.89992 0.92756 0.91686 0.91357 0.81491 0.81017 0.88059 0.87920 0.88314 0.88351 0.91366 0.91480 0.90258 0.90258 0.95241 0.98092 0.93252 0.93518 0.90802 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 2 C -0.01 -0.11 3.25 -91.76 -0.30 -0.41 16 3 C -0.14 -1.15 9.18 37.16 0.34 -0.80 16 4 C 0.21 2.35 6.41 -155.42 -1.00 1.35 16 5 N -0.49 -5.99 11.25 -10.81 -0.12 -6.11 16 6 C -0.03 -0.32 11.87 -17.81 -0.21 -0.54 16 7 C -0.06 -0.55 11.58 -16.56 -0.19 -0.74 16 8 N -0.45 -4.55 2.75 -113.91 -0.31 -4.87 16 9 C 0.12 1.14 4.98 -4.05 -0.02 1.12 16 10 C -0.15 -1.47 5.03 -27.89 -0.14 -1.61 16 11 C 0.53 7.44 7.85 -10.98 -0.09 7.36 16 12 O -0.55 -9.73 16.31 5.56 0.09 -9.64 16 13 N -0.61 -8.93 3.33 -170.52 -0.57 -9.50 16 14 C 0.10 1.17 6.69 -2.53 -0.02 1.15 16 15 C -0.15 -2.23 6.59 -24.58 -0.16 -2.39 16 16 C 0.17 3.21 3.45 -66.09 -0.23 2.99 16 17 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 18 N -0.59 -13.77 2.94 -171.39 -0.50 -14.27 16 19 C 0.16 3.78 7.79 59.85 0.47 4.25 16 20 C -0.26 -6.84 9.67 -15.06 -0.15 -6.99 16 21 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 22 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 23 N -0.91 -25.68 10.49 55.49 0.58 -25.09 16 24 Si 0.91 21.18 29.57 -169.99 -5.03 16.15 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 28 C 0.09 1.56 6.51 -3.07 -0.02 1.54 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.70 6.85 -51.93 -0.36 0.35 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.10 1.01 7.24 -51.93 -0.38 0.63 16 39 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.87 7.85 -51.93 -0.41 0.47 16 42 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.24 6.05 -51.93 -0.31 0.92 16 46 H 0.03 0.76 7.38 -51.93 -0.38 0.38 16 47 H 0.00 0.01 6.03 -51.93 -0.31 -0.30 16 48 H 0.05 1.26 7.08 -51.92 -0.37 0.89 16 49 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 50 H 0.07 1.57 7.13 -51.93 -0.37 1.20 16 51 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 405.81 15.07 6.12 6.12 Total: -1.00 -31.91 405.81 -9.93 -41.84 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.72 Total: -0.06 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -1.46 Total: 5.45 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.92 Total: -59.85 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.91 -9.93 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972476918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.042 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds