Wall clock time and date at job start Tue Mar 31 2020 20:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47212 * 2 1 4 4 C 1.50704 * 109.46845 * 119.99515 * 2 1 3 5 5 N 1.30492 * 125.65103 * 300.04502 * 4 2 1 6 6 C 1.34132 * 109.25748 * 179.97438 * 5 4 2 7 7 C 1.34673 * 108.01933 * 359.73122 * 6 5 4 8 8 N 1.35043 * 125.64675 * 119.99840 * 4 2 1 9 9 C 1.46499 * 126.39916 * 0.04307 * 8 4 2 10 10 C 1.52994 * 109.47439 * 84.99695 * 9 8 4 11 11 C 1.50700 * 109.47051 * 180.02562 * 10 9 8 12 12 O 1.21272 * 120.00364 * 359.97438 * 11 10 9 13 13 N 1.34788 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.64803 * 0.03394 * 13 11 10 15 15 C 1.54909 * 104.83100 * 204.09353 * 14 13 11 16 16 C 1.55155 * 101.58381 * 322.99336 * 15 14 13 17 17 H 1.08996 * 110.87309 * 277.06782 * 16 15 14 18 18 N 1.46501 * 110.72221 * 153.86313 * 16 15 14 19 19 C 1.46504 * 119.99665 * 306.47856 * 18 16 15 20 20 C 1.36934 * 120.00230 * 126.48042 * 18 16 15 21 21 H 1.07999 * 119.99748 * 341.15908 * 20 18 16 22 22 C 1.38808 * 119.99997 * 160.89079 * 20 18 16 23 23 N 1.31612 * 120.00099 * 346.74019 * 22 20 18 24 24 Si 1.86801 * 119.99632 * 166.74142 * 22 20 18 25 25 H 1.48496 * 109.47118 * 60.00288 * 24 22 20 26 26 H 1.48500 * 109.46895 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47384 * 299.99938 * 24 22 20 28 28 C 1.47017 * 125.64497 * 179.97438 * 13 11 10 29 29 H 1.09005 * 109.46691 * 59.99980 * 1 2 3 30 30 H 1.08993 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46957 * 300.00380 * 1 2 3 32 32 H 1.08999 * 109.47619 * 239.99643 * 2 1 3 33 33 H 1.08997 * 109.46770 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46713 * 299.99985 * 3 2 1 35 35 H 1.08999 * 109.47060 * 59.99891 * 3 2 1 36 36 H 1.08002 * 125.99523 * 179.97438 * 6 5 4 37 37 H 1.07997 * 126.59339 * 180.28414 * 7 6 5 38 38 H 1.09002 * 109.47081 * 324.99304 * 9 8 4 39 39 H 1.09004 * 109.47367 * 204.99907 * 9 8 4 40 40 H 1.09002 * 109.47303 * 59.99745 * 10 9 8 41 41 H 1.09003 * 109.46600 * 299.99778 * 10 9 8 42 42 H 1.08997 * 110.36898 * 322.93459 * 14 13 11 43 43 H 1.09004 * 110.36344 * 85.15409 * 14 13 11 44 44 H 1.09001 * 111.00778 * 204.91782 * 15 14 13 45 45 H 1.09003 * 111.00520 * 81.06685 * 15 14 13 46 46 H 1.08997 * 109.47363 * 264.80715 * 19 18 16 47 47 H 1.08992 * 109.47199 * 24.81360 * 19 18 16 48 48 H 1.09008 * 109.46866 * 144.81380 * 19 18 16 49 49 H 0.97007 * 119.99884 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.88416 * 59.55396 * 28 13 11 51 51 H 1.09008 * 110.01561 * 298.46409 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7853 -0.3623 2.4637 6 6 2.3924 -1.2214 3.2959 7 6 3.0354 -2.1400 2.5500 8 7 2.8119 -1.8130 1.2397 9 6 3.3191 -2.5288 0.0664 10 6 4.6108 -1.8662 -0.4163 11 6 5.1321 -2.6022 -1.6236 12 8 4.5301 -3.5625 -2.0551 13 7 6.2681 -2.1939 -2.2232 14 6 7.0970 -1.0489 -1.8045 15 6 7.8618 -0.6245 -3.0830 16 6 8.1487 -1.9982 -3.7449 17 1 9.0365 -2.4596 -3.3127 18 7 8.2957 -1.8541 -5.1954 19 6 7.2468 -1.1930 -5.9758 20 6 9.4134 -2.3374 -5.8217 21 1 10.3063 -2.5430 -5.2500 22 6 9.3969 -2.5683 -7.1903 23 7 8.2538 -2.5768 -7.8426 24 14 10.9973 -2.8670 -8.1064 25 1 11.6705 -4.0672 -7.5482 26 1 10.7096 -3.0865 -9.5466 27 1 11.8837 -1.6857 -7.9525 28 6 6.8864 -2.8174 -3.4024 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8935 -0.5139 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9564 0.8900 36 1 2.3666 -1.1854 4.3750 37 1 3.6173 -2.9732 2.9154 38 1 2.5746 -2.4961 -0.7290 39 1 3.5206 -3.5664 0.3329 40 1 5.3553 -1.8990 0.3791 41 1 4.4092 -0.8287 -0.6828 42 1 6.4663 -0.2331 -1.4514 43 1 7.7963 -1.3518 -1.0252 44 1 8.7896 -0.1109 -2.8310 45 1 7.2360 -0.0046 -3.7251 46 1 6.5698 -1.9435 -6.3838 47 1 6.6895 -0.5124 -5.3323 48 1 7.7008 -0.6312 -6.7922 49 1 8.2423 -2.7385 -8.7990 50 1 6.1909 -2.7946 -4.2414 51 1 7.1626 -3.8477 -3.1780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972476918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:59 Heat of formation + Delta-G solvation = 29.408487 kcal Electronic energy + Delta-G solvation = -29243.679641 eV Core-core repulsion = 25372.052911 eV Total energy + Delta-G solvation = -3871.626730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.11526 -41.15533 -39.05396 -36.58685 -36.26302 -35.81587 -33.53995 -31.84357 -31.05428 -29.72763 -29.31802 -28.08774 -28.03131 -26.15755 -24.59946 -23.83550 -23.59527 -22.11428 -20.91417 -20.26120 -19.99515 -18.97392 -18.58224 -17.64291 -17.43131 -16.86877 -16.83473 -16.20404 -15.80720 -15.71717 -15.21265 -15.11049 -15.04498 -14.64806 -14.52097 -14.37011 -14.10591 -14.05130 -13.86663 -13.62999 -13.39245 -13.25533 -13.13300 -12.95891 -12.72147 -12.53733 -12.50307 -12.39298 -12.36272 -12.21068 -12.12748 -12.10626 -11.85063 -11.80106 -11.42932 -11.11770 -10.87670 -10.62954 -10.57515 -9.69661 -9.27629 -8.87195 -7.84220 -5.30983 1.09191 1.47955 1.49611 1.51510 1.56321 1.61286 2.10028 2.21788 2.51158 3.27514 3.37479 3.48401 3.56298 3.62358 3.66398 3.82180 3.84284 4.08466 4.15313 4.21473 4.25268 4.26676 4.34550 4.35933 4.40112 4.45308 4.62774 4.66661 4.75733 4.77870 4.79222 4.83074 4.88129 4.92380 4.96729 5.02872 5.08923 5.19037 5.21205 5.30625 5.31542 5.35508 5.43355 5.46647 5.62360 5.71979 5.89207 6.22871 6.28700 6.51450 7.03796 7.12299 7.19345 7.83738 8.26289 9.18925 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.002232 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.116971 B =12541.993342 C =12877.411944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.015 4.015 3 C -0.134 4.134 4 C 0.204 3.796 5 N -0.518 5.518 6 C -0.051 4.051 7 C -0.054 4.054 8 N -0.454 5.454 9 C 0.123 3.877 10 C -0.133 4.133 11 C 0.526 3.474 12 O -0.590 6.590 13 N -0.611 5.611 14 C 0.105 3.895 15 C -0.142 4.142 16 C 0.164 3.836 17 H 0.083 0.917 18 N -0.603 5.603 19 C 0.181 3.819 20 C -0.264 4.264 21 H 0.080 0.920 22 C -0.057 4.057 23 N -0.941 5.941 24 Si 0.972 3.028 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.275 1.275 28 C 0.098 3.902 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.184 0.816 37 H 0.200 0.800 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.068 0.932 46 H -0.007 1.007 47 H 0.032 0.968 48 H 0.022 0.978 49 H 0.247 0.753 50 H 0.035 0.965 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 6.730 21.068 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 C -0.192 4.192 4 C -0.059 4.059 5 N -0.237 5.237 6 C -0.199 4.199 7 C -0.187 4.187 8 N -0.136 5.136 9 C 0.000 4.000 10 C -0.173 4.173 11 C 0.315 3.685 12 O -0.471 6.471 13 N -0.343 5.343 14 C -0.016 4.016 15 C -0.181 4.181 16 C 0.056 3.944 17 H 0.101 0.899 18 N -0.324 5.324 19 C 0.036 3.964 20 C -0.394 4.394 21 H 0.098 0.902 22 C -0.251 4.251 23 N -0.588 5.588 24 Si 0.800 3.200 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.201 1.201 28 C -0.028 4.028 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.201 0.799 37 H 0.217 0.783 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.011 0.989 47 H 0.051 0.949 48 H 0.040 0.960 49 H 0.056 0.944 50 H 0.054 0.946 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.932 6.771 20.828 24.048 hybrid contribution 1.116 -1.464 -1.312 2.260 sum -8.816 5.307 19.517 22.063 Atomic orbital electron populations 1.21741 0.92826 1.01798 1.02997 1.19706 0.97022 0.96273 0.90503 1.21739 1.00986 0.93575 1.02920 1.23552 0.97141 0.89337 0.95837 1.70159 1.24860 1.28751 0.99899 1.22679 1.01846 0.94837 1.00490 1.23189 1.08111 1.04964 0.82406 1.45543 1.38302 1.22717 1.07083 1.21530 0.95662 0.96514 0.86284 1.21860 0.98425 1.01318 0.95746 1.20615 0.79069 0.83943 0.84837 1.90717 1.58688 1.30437 1.67263 1.48604 1.23948 1.32047 1.29750 1.22572 0.94086 0.87785 0.97206 1.23228 1.01473 0.97548 0.95886 1.21571 0.94445 0.94548 0.83865 0.89915 1.44148 1.20516 1.65590 1.02176 1.20474 0.89916 0.93440 0.92529 1.19622 0.90878 1.37370 0.91551 0.90181 1.25785 0.99662 1.01024 0.98649 1.70274 1.25286 1.55290 1.07975 0.85272 0.79464 0.78334 0.76945 1.20189 1.22556 1.20078 1.22494 0.96329 0.97069 0.86908 0.90177 0.93460 0.92405 0.89455 0.92633 0.90321 0.92481 0.79909 0.78329 0.88738 0.87748 0.85948 0.86679 0.87859 0.88675 0.88232 0.91347 0.98851 0.94924 0.95969 0.94357 0.94639 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 2 C -0.01 -0.24 3.25 -11.53 -0.04 -0.28 16 3 C -0.13 -1.95 9.18 71.98 0.66 -1.29 16 4 C 0.20 4.11 6.41 138.13 0.89 5.00 16 5 N -0.52 -12.06 11.25 -188.12 -2.12 -14.18 16 6 C -0.05 -0.98 11.87 83.52 0.99 0.01 16 7 C -0.05 -0.87 11.58 83.09 0.96 0.09 16 8 N -0.45 -8.03 2.75 -514.29 -1.42 -9.45 16 9 C 0.12 2.07 4.98 86.38 0.43 2.50 16 10 C -0.13 -2.11 5.03 29.85 0.15 -1.96 16 11 C 0.53 13.78 7.85 87.66 0.69 14.46 16 12 O -0.59 -20.80 16.31 -3.01 -0.05 -20.85 16 13 N -0.61 -16.55 3.33 -811.79 -2.70 -19.25 16 14 C 0.11 1.99 6.69 86.86 0.58 2.57 16 15 C -0.14 -3.67 6.59 31.99 0.21 -3.46 16 16 C 0.16 5.92 3.45 46.18 0.16 6.08 16 17 H 0.08 2.90 7.90 -2.39 -0.02 2.88 16 18 N -0.60 -28.51 2.94 -696.15 -2.04 -30.56 16 19 C 0.18 8.74 7.79 127.77 1.00 9.74 16 20 C -0.26 -13.85 9.67 84.03 0.81 -13.03 16 21 H 0.08 3.97 7.80 -2.91 -0.02 3.94 16 22 C -0.06 -3.09 5.11 84.86 0.43 -2.66 16 23 N -0.94 -55.35 10.49 21.65 0.23 -55.12 16 24 Si 0.97 44.04 29.57 68.60 2.03 46.07 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C 0.10 3.58 6.51 86.73 0.56 4.14 16 29 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.09 1.32 6.85 -2.39 -0.02 1.31 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.09 1.74 7.24 -2.39 -0.02 1.72 16 39 H 0.10 1.75 8.09 -2.38 -0.02 1.73 16 40 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.12 1.53 7.85 -2.39 -0.02 1.51 16 42 H 0.10 1.34 7.48 -2.39 -0.02 1.32 16 43 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.07 1.94 6.05 -2.39 -0.01 1.93 16 46 H -0.01 -0.38 7.38 -2.39 -0.02 -0.40 16 47 H 0.03 1.33 6.03 -2.39 -0.01 1.31 16 48 H 0.02 1.15 7.08 -2.38 -0.02 1.14 16 49 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 50 H 0.04 1.56 7.13 -2.39 -0.02 1.55 16 51 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -72.70 405.81 3.97 -68.72 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.90 Total: 14.16 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 9.15 Total: 20.44 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -8.05 Total: -128.55 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.70 3.97 -68.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972476918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.129 kcal (2) G-P(sol) polarization free energy of solvation -72.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds