Wall clock time and date at job start Tue Mar 31 2020 20:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47054 * 120.00372 * 2 1 3 5 5 N 1.30502 * 125.64812 * 300.16717 * 4 2 1 6 6 C 1.34125 * 109.25453 * 180.29447 * 5 4 2 7 7 C 1.34665 * 108.01963 * 359.73369 * 6 5 4 8 8 N 1.35035 * 125.65161 * 120.00286 * 4 2 1 9 9 C 1.46505 * 126.39813 * 359.96813 * 8 4 2 10 10 C 1.52999 * 109.47257 * 84.71919 * 9 8 4 11 11 C 1.50693 * 109.47375 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99813 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00392 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64361 * 0.02562 * 13 11 10 15 15 C 1.54917 * 104.83083 * 155.82595 * 14 13 11 16 16 C 1.55159 * 101.57982 * 37.01035 * 15 14 13 17 17 H 1.09001 * 110.72187 * 82.86093 * 16 15 14 18 18 N 1.46501 * 110.72147 * 206.13480 * 16 15 14 19 19 C 1.46495 * 119.99948 * 58.54439 * 18 16 15 20 20 C 1.36927 * 119.99868 * 238.54775 * 18 16 15 21 21 H 1.08004 * 120.00649 * 327.78382 * 20 18 16 22 22 C 1.38817 * 120.00168 * 147.78516 * 20 18 16 23 23 N 1.31621 * 120.00242 * 154.16119 * 22 20 18 24 24 Si 1.86796 * 119.99857 * 334.16638 * 22 20 18 25 25 H 1.48510 * 109.46927 * 95.21232 * 24 22 20 26 26 H 1.48497 * 109.47453 * 215.21207 * 24 22 20 27 27 H 1.48507 * 109.47070 * 335.21608 * 24 22 20 28 28 C 1.47013 * 125.65101 * 179.97438 * 13 11 10 29 29 H 1.09003 * 109.46805 * 299.99966 * 1 2 3 30 30 H 1.09000 * 109.47640 * 60.00043 * 1 2 3 31 31 H 1.09002 * 109.47492 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46805 * 240.00034 * 2 1 3 33 33 H 1.09003 * 109.46968 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47101 * 299.99973 * 3 2 1 35 35 H 1.08990 * 109.47480 * 60.00319 * 3 2 1 36 36 H 1.08004 * 125.99098 * 179.72050 * 6 5 4 37 37 H 1.08002 * 126.58809 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46715 * 324.71646 * 9 8 4 39 39 H 1.09005 * 109.47152 * 204.71644 * 9 8 4 40 40 H 1.09001 * 109.46948 * 59.99701 * 10 9 8 41 41 H 1.09007 * 109.46858 * 300.00466 * 10 9 8 42 42 H 1.08998 * 110.37013 * 36.99207 * 14 13 11 43 43 H 1.09003 * 110.46613 * 274.71059 * 14 13 11 44 44 H 1.08997 * 111.00222 * 278.93630 * 15 14 13 45 45 H 1.08996 * 111.00161 * 155.08051 * 15 14 13 46 46 H 1.09002 * 109.46959 * 95.42781 * 19 18 16 47 47 H 1.08997 * 109.47498 * 215.43009 * 19 18 16 48 48 H 1.09004 * 109.47019 * 335.43183 * 19 18 16 49 49 H 0.96996 * 120.00142 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.88639 * 61.68659 * 28 13 11 51 51 H 1.09002 * 109.88383 * 300.52126 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7834 -0.3639 2.4637 6 6 2.3969 -1.2185 3.2957 7 6 3.0460 -2.1326 2.5497 8 7 2.8120 -1.8130 1.2395 9 6 3.3180 -2.5296 0.0661 10 6 4.6055 -1.8629 -0.4226 11 6 5.1257 -2.5996 -1.6299 12 8 4.5259 -3.5633 -2.0571 13 7 6.2573 -2.1876 -2.2349 14 6 7.0823 -1.0375 -1.8224 15 6 8.4964 -1.3453 -2.3751 16 6 8.1607 -2.0199 -3.7314 17 1 7.9728 -1.2695 -4.4993 18 7 9.2379 -2.9244 -4.1411 19 6 9.6299 -4.0373 -3.2728 20 6 9.8782 -2.7296 -5.3357 21 1 9.3396 -2.3177 -6.1763 22 6 11.2197 -3.0616 -5.4663 23 7 11.7099 -3.3672 -6.6490 24 14 12.3292 -3.0749 -3.9636 25 1 12.4107 -4.4547 -3.4206 26 1 13.6874 -2.6128 -4.3470 27 1 11.7715 -2.1677 -2.9285 28 6 6.8741 -2.8112 -3.4147 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 2.3745 -1.1801 4.3748 37 1 3.6378 -2.9589 2.9150 38 1 2.5707 -2.5015 -0.7269 39 1 3.5246 -3.5657 0.3343 40 1 5.3527 -1.8909 0.3705 41 1 4.3989 -0.8267 -0.6907 42 1 7.1085 -0.9597 -0.7355 43 1 6.6969 -0.1160 -2.2588 44 1 9.0313 -2.0320 -1.7190 45 1 9.0654 -0.4279 -2.5253 46 1 9.1113 -4.9432 -3.5867 47 1 10.7065 -4.1918 -3.3438 48 1 9.3634 -3.8049 -2.2417 49 1 12.6472 -3.5996 -6.7402 50 1 6.1896 -2.7601 -4.2615 51 1 7.1218 -3.8503 -3.1980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972476919.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:09 Heat of formation + Delta-G solvation = 52.842664 kcal Electronic energy + Delta-G solvation = -29243.855069 eV Core-core repulsion = 25373.244522 eV Total energy + Delta-G solvation = -3870.610548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.42218 -40.10564 -37.87979 -35.66185 -35.13823 -35.03010 -32.02212 -30.99796 -30.15291 -29.02857 -28.36240 -27.45766 -26.34463 -25.19536 -23.39943 -22.95008 -22.56854 -21.44157 -19.55429 -19.33937 -19.25007 -17.78230 -17.16049 -16.65573 -16.48108 -15.96231 -15.71096 -15.26041 -15.01982 -14.64263 -14.53948 -14.10140 -13.92259 -13.57352 -13.43604 -13.40732 -13.26631 -13.10820 -12.79747 -12.56623 -12.47244 -12.38563 -12.28808 -11.98549 -11.86075 -11.74037 -11.60237 -11.51761 -11.24513 -11.12783 -10.98129 -10.62500 -10.31739 -10.17842 -10.08397 -10.05842 -9.76956 -9.62401 -8.61604 -8.60746 -8.59494 -7.08071 -6.11264 -3.47790 1.77766 2.37473 2.48853 2.93233 3.02362 3.22930 3.38830 3.42270 4.04165 4.26249 4.28530 4.35396 4.41864 4.51432 4.67905 4.74649 4.80635 4.86644 4.89819 4.96990 5.03087 5.08399 5.23145 5.25924 5.30609 5.36725 5.39766 5.41622 5.51628 5.53477 5.55094 5.61084 5.64792 5.74967 5.92588 5.93837 5.99789 6.07879 6.12180 6.18770 6.28998 6.32978 6.50257 6.54423 6.60291 6.67177 6.91768 7.48827 7.86237 7.89281 8.03763 8.22296 8.81821 9.58080 9.94108 11.04039 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023211 B = 0.002279 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.055498 B =12284.774419 C =12528.636857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 C -0.139 4.139 4 C 0.214 3.786 5 N -0.488 5.488 6 C -0.030 4.030 7 C -0.058 4.058 8 N -0.454 5.454 9 C 0.119 3.881 10 C -0.152 4.152 11 C 0.529 3.471 12 O -0.546 6.546 13 N -0.610 5.610 14 C 0.098 3.902 15 C -0.158 4.158 16 C 0.173 3.827 17 H 0.089 0.911 18 N -0.596 5.596 19 C 0.109 3.891 20 C -0.276 4.276 21 H 0.083 0.917 22 C 0.036 3.964 23 N -0.893 5.893 24 Si 0.882 3.118 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.271 1.271 28 C 0.089 3.911 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.021 0.979 47 H 0.041 0.959 48 H 0.035 0.965 49 H 0.265 0.735 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.589 6.944 16.676 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 C -0.197 4.197 4 C -0.049 4.049 5 N -0.206 5.206 6 C -0.178 4.178 7 C -0.191 4.191 8 N -0.137 5.137 9 C -0.004 4.004 10 C -0.193 4.193 11 C 0.317 3.683 12 O -0.424 6.424 13 N -0.343 5.343 14 C -0.025 4.025 15 C -0.198 4.198 16 C 0.063 3.937 17 H 0.108 0.892 18 N -0.318 5.318 19 C -0.035 4.035 20 C -0.404 4.404 21 H 0.101 0.899 22 C -0.166 4.166 23 N -0.533 5.533 24 Si 0.713 3.287 25 H -0.215 1.215 26 H -0.231 1.231 27 H -0.196 1.196 28 C -0.035 4.035 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.185 0.815 37 H 0.190 0.810 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.040 0.960 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.221 6.915 16.468 25.516 hybrid contribution 1.552 -0.879 0.763 1.940 sum -16.670 6.036 17.232 24.723 Atomic orbital electron populations 1.21776 0.93014 1.02186 1.02772 1.19594 0.96809 0.95867 0.90924 1.21777 1.00991 0.94122 1.02831 1.23244 0.97054 0.88896 0.95661 1.70182 1.23847 1.27551 0.99005 1.22276 1.01212 0.94774 0.99570 1.22738 1.08481 1.04993 0.82882 1.45496 1.38364 1.23027 1.06776 1.21596 0.95790 0.96455 0.86524 1.21959 0.98279 1.01477 0.97560 1.19843 0.79885 0.84379 0.84226 1.90734 1.57625 1.28001 1.66078 1.48506 1.23875 1.31112 1.30833 1.22397 0.91794 0.88811 0.99496 1.23451 0.94307 1.02209 0.99839 1.21453 0.86949 0.91267 0.94020 0.89240 1.44030 1.39083 1.27504 1.21145 1.21327 0.98732 0.90659 0.92805 1.18784 0.92054 1.42615 0.86957 0.89894 1.25330 0.96830 0.98387 0.96008 1.69906 1.14699 1.45380 1.23331 0.86907 0.79880 0.77394 0.84498 1.21515 1.23065 1.19637 1.22716 0.95854 0.98651 0.86294 0.91347 0.91749 0.92780 0.90048 0.92744 0.91712 0.91322 0.81455 0.80988 0.88057 0.87901 0.88232 0.88258 0.91281 0.91093 0.90812 0.89861 0.96045 0.94125 0.94657 0.92546 0.91513 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 2 C -0.01 -0.10 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 4 C 0.21 2.21 6.41 -155.42 -1.00 1.21 16 5 N -0.49 -5.76 11.25 -10.82 -0.12 -5.89 16 6 C -0.03 -0.31 11.87 -17.82 -0.21 -0.52 16 7 C -0.06 -0.53 11.58 -16.56 -0.19 -0.72 16 8 N -0.45 -4.30 2.75 -113.90 -0.31 -4.61 16 9 C 0.12 1.05 4.97 -4.04 -0.02 1.03 16 10 C -0.15 -1.34 5.03 -27.89 -0.14 -1.48 16 11 C 0.53 6.81 7.85 -10.99 -0.09 6.72 16 12 O -0.55 -8.91 16.31 5.55 0.09 -8.82 16 13 N -0.61 -8.15 3.33 -170.52 -0.57 -8.72 16 14 C 0.10 1.08 6.69 -2.52 -0.02 1.06 16 15 C -0.16 -2.26 6.60 -24.58 -0.16 -2.42 16 16 C 0.17 3.03 3.43 -66.09 -0.23 2.80 16 17 H 0.09 1.57 7.95 -51.93 -0.41 1.16 16 18 N -0.60 -13.21 2.58 -171.38 -0.44 -13.65 16 19 C 0.11 2.28 8.32 59.84 0.50 2.78 16 20 C -0.28 -7.32 9.88 -15.06 -0.15 -7.47 16 21 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 22 C 0.04 0.99 5.29 -17.43 -0.09 0.89 16 23 N -0.89 -26.39 13.97 55.49 0.78 -25.62 16 24 Si 0.88 21.37 25.06 -169.99 -4.26 17.11 16 25 H -0.29 -6.82 6.64 56.52 0.38 -6.45 16 26 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.09 1.45 6.50 -3.07 -0.02 1.43 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.61 6.85 -51.93 -0.36 0.25 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.17 1.30 8.06 -52.48 -0.42 0.87 16 37 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.10 0.90 7.26 -51.93 -0.38 0.52 16 39 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.10 0.80 7.85 -51.93 -0.41 0.39 16 41 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 42 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.13 6.36 -51.93 -0.33 0.80 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 47 H 0.04 0.93 2.63 -51.93 -0.14 0.79 16 48 H 0.03 0.64 6.37 -51.93 -0.33 0.31 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.07 1.31 6.90 -51.93 -0.36 0.95 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -32.56 401.84 -8.81 -41.37 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.59 Total: -0.74 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.43 Total: 3.50 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.67 Total: -58.48 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.26 Total: 17.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.56 -8.81 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972476919.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.211 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds