Wall clock time and date at job start Tue Mar 31 2020 20:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47054 * 120.00372 * 2 1 3 5 5 N 1.30502 * 125.64812 * 300.16717 * 4 2 1 6 6 C 1.34125 * 109.25453 * 180.29447 * 5 4 2 7 7 C 1.34665 * 108.01963 * 359.73369 * 6 5 4 8 8 N 1.35035 * 125.65161 * 120.00286 * 4 2 1 9 9 C 1.46505 * 126.39813 * 359.96813 * 8 4 2 10 10 C 1.52999 * 109.47257 * 84.71919 * 9 8 4 11 11 C 1.50693 * 109.47375 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99813 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00392 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64361 * 0.02562 * 13 11 10 15 15 C 1.54917 * 104.83083 * 155.82595 * 14 13 11 16 16 C 1.55159 * 101.57982 * 37.01035 * 15 14 13 17 17 H 1.09001 * 110.72187 * 82.86093 * 16 15 14 18 18 N 1.46501 * 110.72147 * 206.13480 * 16 15 14 19 19 C 1.46495 * 119.99948 * 58.54439 * 18 16 15 20 20 C 1.36927 * 119.99868 * 238.54775 * 18 16 15 21 21 H 1.08004 * 120.00649 * 327.78382 * 20 18 16 22 22 C 1.38817 * 120.00168 * 147.78516 * 20 18 16 23 23 N 1.31621 * 120.00242 * 154.16119 * 22 20 18 24 24 Si 1.86796 * 119.99857 * 334.16638 * 22 20 18 25 25 H 1.48510 * 109.46927 * 95.21232 * 24 22 20 26 26 H 1.48497 * 109.47453 * 215.21207 * 24 22 20 27 27 H 1.48507 * 109.47070 * 335.21608 * 24 22 20 28 28 C 1.47013 * 125.65101 * 179.97438 * 13 11 10 29 29 H 1.09003 * 109.46805 * 299.99966 * 1 2 3 30 30 H 1.09000 * 109.47640 * 60.00043 * 1 2 3 31 31 H 1.09002 * 109.47492 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46805 * 240.00034 * 2 1 3 33 33 H 1.09003 * 109.46968 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47101 * 299.99973 * 3 2 1 35 35 H 1.08990 * 109.47480 * 60.00319 * 3 2 1 36 36 H 1.08004 * 125.99098 * 179.72050 * 6 5 4 37 37 H 1.08002 * 126.58809 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46715 * 324.71646 * 9 8 4 39 39 H 1.09005 * 109.47152 * 204.71644 * 9 8 4 40 40 H 1.09001 * 109.46948 * 59.99701 * 10 9 8 41 41 H 1.09007 * 109.46858 * 300.00466 * 10 9 8 42 42 H 1.08998 * 110.37013 * 36.99207 * 14 13 11 43 43 H 1.09003 * 110.46613 * 274.71059 * 14 13 11 44 44 H 1.08997 * 111.00222 * 278.93630 * 15 14 13 45 45 H 1.08996 * 111.00161 * 155.08051 * 15 14 13 46 46 H 1.09002 * 109.46959 * 95.42781 * 19 18 16 47 47 H 1.08997 * 109.47498 * 215.43009 * 19 18 16 48 48 H 1.09004 * 109.47019 * 335.43183 * 19 18 16 49 49 H 0.96996 * 120.00142 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.88639 * 61.68659 * 28 13 11 51 51 H 1.09002 * 109.88383 * 300.52126 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7834 -0.3639 2.4637 6 6 2.3969 -1.2185 3.2957 7 6 3.0460 -2.1326 2.5497 8 7 2.8120 -1.8130 1.2395 9 6 3.3180 -2.5296 0.0661 10 6 4.6055 -1.8629 -0.4226 11 6 5.1257 -2.5996 -1.6299 12 8 4.5259 -3.5633 -2.0571 13 7 6.2573 -2.1876 -2.2349 14 6 7.0823 -1.0375 -1.8224 15 6 8.4964 -1.3453 -2.3751 16 6 8.1607 -2.0199 -3.7314 17 1 7.9728 -1.2695 -4.4993 18 7 9.2379 -2.9244 -4.1411 19 6 9.6299 -4.0373 -3.2728 20 6 9.8782 -2.7296 -5.3357 21 1 9.3396 -2.3177 -6.1763 22 6 11.2197 -3.0616 -5.4663 23 7 11.7099 -3.3672 -6.6490 24 14 12.3292 -3.0749 -3.9636 25 1 12.4107 -4.4547 -3.4206 26 1 13.6874 -2.6128 -4.3470 27 1 11.7715 -2.1677 -2.9285 28 6 6.8741 -2.8112 -3.4147 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 2.3745 -1.1801 4.3748 37 1 3.6378 -2.9589 2.9150 38 1 2.5707 -2.5015 -0.7269 39 1 3.5246 -3.5657 0.3343 40 1 5.3527 -1.8909 0.3705 41 1 4.3989 -0.8267 -0.6907 42 1 7.1085 -0.9597 -0.7355 43 1 6.6969 -0.1160 -2.2588 44 1 9.0313 -2.0320 -1.7190 45 1 9.0654 -0.4279 -2.5253 46 1 9.1113 -4.9432 -3.5867 47 1 10.7065 -4.1918 -3.3438 48 1 9.3634 -3.8049 -2.2417 49 1 12.6472 -3.5996 -6.7402 50 1 6.1896 -2.7601 -4.2615 51 1 7.1218 -3.8503 -3.1980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972476919.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:07 Heat of formation + Delta-G solvation = 33.537510 kcal Electronic energy + Delta-G solvation = -29244.692204 eV Core-core repulsion = 25373.244522 eV Total energy + Delta-G solvation = -3871.447682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.11970 -41.19485 -39.15108 -36.68273 -36.26051 -35.81673 -33.84147 -32.13382 -31.21258 -29.77554 -29.50865 -28.13345 -28.02485 -26.26425 -24.67510 -23.86210 -23.60304 -22.12175 -20.98269 -20.28535 -19.99835 -19.01538 -18.59584 -17.90453 -17.55102 -17.04079 -16.80520 -16.25394 -15.96753 -15.80622 -15.31746 -15.12545 -14.98293 -14.68926 -14.64626 -14.45156 -14.37842 -14.19732 -14.01039 -13.88351 -13.63681 -13.33975 -13.25869 -13.03597 -12.95597 -12.56948 -12.51137 -12.44366 -12.38816 -12.34965 -12.09960 -12.06834 -11.84603 -11.63224 -11.43268 -11.12738 -10.88099 -10.64691 -10.56808 -9.71679 -9.28418 -8.93458 -8.22645 -5.55368 1.08574 1.31004 1.42057 1.50693 1.53079 1.60361 2.07574 2.21228 2.41220 2.98974 3.27612 3.37529 3.47870 3.61442 3.66419 3.74684 3.81747 4.01187 4.15075 4.21459 4.22087 4.25647 4.30871 4.34816 4.37547 4.40012 4.48024 4.61907 4.67281 4.70019 4.76477 4.77774 4.81990 4.83662 4.92824 4.94290 4.97389 4.97449 5.09211 5.17513 5.22543 5.31141 5.32662 5.36269 5.46507 5.86449 5.88205 6.13125 6.23328 6.47996 6.89416 7.02746 7.18963 7.58126 7.97479 8.96917 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023211 B = 0.002279 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.055498 B =12284.774419 C =12528.636857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.014 4.014 3 C -0.135 4.135 4 C 0.205 3.795 5 N -0.519 5.519 6 C -0.052 4.052 7 C -0.055 4.055 8 N -0.455 5.455 9 C 0.123 3.877 10 C -0.136 4.136 11 C 0.530 3.470 12 O -0.585 6.585 13 N -0.611 5.611 14 C 0.106 3.894 15 C -0.150 4.150 16 C 0.164 3.836 17 H 0.082 0.918 18 N -0.609 5.609 19 C 0.109 3.891 20 C -0.263 4.263 21 H 0.048 0.952 22 C -0.024 4.024 23 N -0.945 5.945 24 Si 0.949 3.051 25 H -0.280 1.280 26 H -0.312 1.312 27 H -0.250 1.250 28 C 0.100 3.900 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.182 0.818 37 H 0.198 0.802 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.016 0.984 47 H 0.025 0.975 48 H 0.068 0.932 49 H 0.263 0.737 50 H 0.054 0.946 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 8.091 19.510 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 C -0.193 4.193 4 C -0.058 4.058 5 N -0.238 5.238 6 C -0.199 4.199 7 C -0.188 4.188 8 N -0.137 5.137 9 C 0.000 4.000 10 C -0.176 4.176 11 C 0.319 3.681 12 O -0.466 6.466 13 N -0.344 5.344 14 C -0.016 4.016 15 C -0.190 4.190 16 C 0.057 3.943 17 H 0.101 0.899 18 N -0.332 5.332 19 C -0.035 4.035 20 C -0.393 4.393 21 H 0.066 0.934 22 C -0.221 4.221 23 N -0.589 5.589 24 Si 0.778 3.222 25 H -0.208 1.208 26 H -0.241 1.241 27 H -0.174 1.174 28 C -0.025 4.025 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.199 0.801 37 H 0.215 0.785 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.034 0.966 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.716 8.096 19.366 28.122 hybrid contribution 1.538 -1.261 -0.165 1.995 sum -17.178 6.835 19.201 26.655 Atomic orbital electron populations 1.21745 0.92875 1.01806 1.02984 1.19713 0.96967 0.96227 0.90491 1.21741 1.01004 0.93598 1.02917 1.23597 0.97115 0.89211 0.95867 1.70161 1.24903 1.28755 0.99991 1.22661 1.01667 0.95109 1.00472 1.23168 1.07954 1.05105 0.82536 1.45547 1.38236 1.22831 1.07058 1.21551 0.95772 0.96397 0.86278 1.21878 0.98388 1.01540 0.95800 1.20507 0.79049 0.83845 0.84660 1.90726 1.58672 1.29915 1.67320 1.48545 1.24350 1.31625 1.29875 1.22540 0.88976 0.88469 1.01626 1.23324 0.96632 1.01960 0.97078 1.21566 0.85934 0.90829 0.95994 0.89941 1.44072 1.39674 1.29105 1.20323 1.21344 0.97579 0.90202 0.94344 1.18694 0.91981 1.40679 0.87912 0.93393 1.25969 0.98372 0.99057 0.98680 1.70038 1.14894 1.48137 1.25826 0.85824 0.77199 0.77958 0.81211 1.20820 1.24110 1.17411 1.22306 0.95196 0.97560 0.87441 0.92601 0.90040 0.93440 0.89099 0.92605 0.90157 0.92690 0.80068 0.78466 0.88357 0.87882 0.86351 0.86420 0.87809 0.88755 0.91257 0.88983 0.96587 0.95668 0.91336 0.92774 0.92799 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.18 71.98 0.66 -1.22 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.24 16 3 C -0.13 -1.71 9.18 71.98 0.66 -1.05 16 4 C 0.20 3.83 6.41 138.13 0.89 4.72 16 5 N -0.52 -11.63 11.25 -188.14 -2.12 -13.75 16 6 C -0.05 -0.96 11.87 83.52 0.99 0.03 16 7 C -0.06 -0.85 11.58 83.09 0.96 0.11 16 8 N -0.45 -7.41 2.75 -514.28 -1.41 -8.83 16 9 C 0.12 1.81 4.97 86.38 0.43 2.24 16 10 C -0.14 -1.85 5.03 29.85 0.15 -1.70 16 11 C 0.53 12.08 7.85 87.66 0.69 12.77 16 12 O -0.59 -18.25 16.31 -3.05 -0.05 -18.30 16 13 N -0.61 -14.45 3.33 -811.78 -2.70 -17.15 16 14 C 0.11 1.82 6.69 86.86 0.58 2.40 16 15 C -0.15 -3.75 6.60 31.99 0.21 -3.54 16 16 C 0.16 5.55 3.43 46.18 0.16 5.71 16 17 H 0.08 2.87 7.95 -2.39 -0.02 2.85 16 18 N -0.61 -26.65 2.58 -696.14 -1.80 -28.45 16 19 C 0.11 4.41 8.32 127.77 1.06 5.47 16 20 C -0.26 -14.24 9.88 84.04 0.83 -13.41 16 21 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 22 C -0.02 -1.36 5.29 84.86 0.45 -0.91 16 23 N -0.95 -57.74 13.97 21.65 0.30 -57.44 16 24 Si 0.95 44.19 25.06 68.60 1.72 45.91 16 25 H -0.28 -12.64 6.64 99.48 0.66 -11.98 16 26 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16 27 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 28 C 0.10 3.15 6.50 86.73 0.56 3.72 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 1.12 6.85 -2.39 -0.02 1.10 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.10 1.53 7.26 -2.39 -0.02 1.51 16 39 H 0.10 1.55 8.09 -2.38 -0.02 1.53 16 40 H 0.12 1.27 7.85 -2.39 -0.02 1.25 16 41 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.10 1.19 7.48 -2.39 -0.02 1.17 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.83 6.36 -2.39 -0.02 1.81 16 45 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.02 0.65 8.06 -2.39 -0.02 0.63 16 47 H 0.03 1.10 2.63 -2.39 -0.01 1.10 16 48 H 0.07 2.28 6.37 -2.38 -0.02 2.27 16 49 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 50 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.05 1.86 6.90 -2.39 -0.02 1.84 16 Total: -1.00 -73.32 401.84 4.05 -69.27 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.86 Total: 13.61 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 9.25 Total: 15.11 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -7.72 Total: -125.61 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.72 Total: 45.91 kcal Total: -73.32 4.05 -69.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972476919.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.808 kcal (2) G-P(sol) polarization free energy of solvation -73.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds