Wall clock time and date at job start Tue Mar 31 2020 19:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46804 * 2 1 4 4 C 1.50703 * 109.46948 * 119.99362 * 2 1 3 5 5 C 1.35368 * 126.38882 * 325.32878 * 4 2 1 6 6 C 1.41503 * 105.50415 * 180.13784 * 5 4 2 7 7 C 1.47709 * 126.51720 * 179.84205 * 6 5 4 8 8 O 1.21570 * 120.00104 * 359.71697 * 7 6 5 9 9 N 1.34779 * 119.99581 * 179.71525 * 7 6 5 10 10 C 1.46502 * 119.99434 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.64376 * 325.70163 * 10 9 7 12 12 C 1.54322 * 110.71872 * 88.84348 * 10 9 7 13 13 N 1.47022 * 107.27269 * 96.34682 * 12 10 9 14 14 C 1.36934 * 125.65186 * 178.90274 * 13 12 10 15 15 H 1.08001 * 120.00082 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99885 * 0.02640 * 14 13 12 17 17 N 1.31622 * 120.00122 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47080 * 59.99432 * 18 16 14 20 20 H 1.48500 * 109.47387 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47098 * 300.00151 * 18 16 14 22 22 C 1.47435 * 108.70089 * 358.93984 * 13 12 10 23 23 C 1.54904 * 104.83391 * 24.12919 * 22 13 12 24 24 C 1.52995 * 111.00688 * 204.91696 * 23 22 13 25 25 C 1.53001 * 111.00503 * 81.06336 * 23 22 13 26 26 N 1.31808 * 106.95884 * 359.58498 * 6 5 4 27 27 N 1.28463 * 110.07645 * 0.25813 * 26 6 5 28 28 C 1.46502 * 124.88198 * 179.97438 * 27 26 6 29 29 H 1.08992 * 109.47174 * 300.00189 * 1 2 3 30 30 H 1.08999 * 109.46940 * 60.00450 * 1 2 3 31 31 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 32 32 H 1.08988 * 109.47534 * 239.99467 * 2 1 3 33 33 H 1.09001 * 109.47587 * 59.99781 * 3 2 1 34 34 H 1.09004 * 109.47221 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47004 * 299.99510 * 3 2 1 36 36 H 1.07999 * 127.24464 * 359.97438 * 5 4 2 37 37 H 0.96999 * 120.00054 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.88417 * 215.75899 * 12 10 9 39 39 H 1.08995 * 109.88594 * 336.92652 * 12 10 9 40 40 H 0.96995 * 120.00311 * 179.97438 * 17 16 14 41 41 H 1.08997 * 110.36223 * 142.97138 * 22 13 12 42 42 H 1.09002 * 110.36419 * 265.17961 * 22 13 12 43 43 H 1.08994 * 109.47353 * 172.19002 * 24 23 22 44 44 H 1.08998 * 109.46929 * 292.20034 * 24 23 22 45 45 H 1.09005 * 109.46974 * 52.19916 * 24 23 22 46 46 H 1.09006 * 109.47230 * 307.80795 * 25 23 22 47 47 H 1.08999 * 109.46701 * 67.80264 * 25 23 22 48 48 H 1.09001 * 109.47069 * 187.80426 * 25 23 22 49 49 H 1.09008 * 109.46747 * 90.02699 * 28 27 26 50 50 H 1.09001 * 109.47328 * 210.02304 * 28 27 26 51 51 H 1.08999 * 109.47679 * 330.03063 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.4550 -0.7012 2.4550 6 6 2.2886 -1.5011 3.2721 7 6 2.0888 -1.8009 4.7046 8 8 1.1322 -1.3378 5.2948 9 7 2.9670 -2.5879 5.3571 10 6 2.7684 -2.8857 6.7778 11 1 2.3269 -2.0317 7.2914 12 6 1.8907 -4.1427 6.9546 13 7 2.7968 -5.2837 7.1510 14 6 2.4125 -6.5803 7.3660 15 1 3.1586 -7.3496 7.4996 16 6 1.0639 -6.9059 7.4122 17 7 0.1546 -5.9682 7.2498 18 14 0.5395 -8.6747 7.7047 19 1 1.0652 -9.1367 9.0144 20 1 -0.9432 -8.7571 7.7100 21 1 1.0798 -9.5366 6.6228 22 6 4.1879 -4.8005 7.0791 23 6 4.1055 -3.2984 7.4482 24 6 5.2808 -2.5217 6.8513 25 6 4.0398 -3.1091 8.9650 26 7 3.2742 -1.9323 2.5105 27 7 3.1389 -1.4794 1.3159 28 6 4.0540 -1.7570 0.2060 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8898 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 0.5503 -0.1890 2.7472 37 1 3.7300 -2.9577 4.8860 38 1 1.2474 -4.0259 7.8268 39 1 1.2845 -4.3000 6.0626 40 1 -0.7878 -6.1957 7.2817 41 1 4.8121 -5.3337 7.7960 42 1 4.5806 -4.9240 6.0698 43 1 5.1270 -1.4539 7.0064 44 1 6.2054 -2.8304 7.3391 45 1 5.3473 -2.7277 5.7830 46 1 3.2391 -3.7256 9.3737 47 1 4.9897 -3.4058 9.4096 48 1 3.8437 -2.0613 9.1922 49 1 3.7253 -2.6532 -0.3203 50 1 4.0571 -0.9120 -0.4824 51 1 5.0603 -1.9127 0.5949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974574405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:52 Heat of formation + Delta-G solvation = 36.027796 kcal Electronic energy + Delta-G solvation = -30007.442038 eV Core-core repulsion = 26136.102343 eV Total energy + Delta-G solvation = -3871.339695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.74647 -41.13138 -39.33177 -36.70918 -35.70141 -34.65672 -34.24309 -32.61652 -30.71581 -29.99247 -28.48524 -28.01946 -27.87360 -27.38110 -25.43722 -24.07909 -23.49357 -22.09653 -21.42732 -20.61728 -19.95774 -18.69525 -18.36540 -17.55381 -17.31239 -17.20217 -16.63292 -15.79949 -15.74292 -15.50292 -15.43595 -15.24288 -14.81461 -14.75739 -14.68288 -14.03654 -13.91163 -13.80731 -13.53536 -13.45738 -13.41028 -13.15140 -12.99848 -12.96588 -12.84873 -12.65021 -12.60884 -12.58667 -12.18247 -12.11109 -11.87251 -11.79067 -11.77305 -11.76311 -11.54182 -11.33446 -11.21909 -10.73587 -10.22385 -9.94104 -9.90412 -8.89750 -7.82602 -5.20100 0.51432 1.10092 1.42690 1.47121 1.53596 1.55578 2.17253 2.39379 2.49280 3.28886 3.34864 3.48277 3.51132 3.70960 3.85784 3.95802 4.05467 4.10316 4.19740 4.35673 4.38319 4.40778 4.46832 4.51172 4.58988 4.64743 4.68645 4.73382 4.83457 4.84864 4.86111 4.93657 4.99632 5.00367 5.03590 5.12059 5.15179 5.15825 5.28284 5.30856 5.33138 5.39091 5.43501 5.45012 5.55490 5.69772 5.73305 5.86912 6.17204 6.47400 6.89934 7.07592 7.19949 7.77381 8.42682 9.26470 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003186 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.546928 B = 8787.693115 C = 9753.506802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.032 3.968 5 C -0.199 4.199 6 C -0.040 4.040 7 C 0.595 3.405 8 O -0.577 6.577 9 N -0.687 5.687 10 C 0.135 3.865 11 H 0.081 0.919 12 C 0.195 3.805 13 N -0.619 5.619 14 C -0.239 4.239 15 H 0.088 0.912 16 C -0.071 4.071 17 N -0.954 5.954 18 Si 0.981 3.019 19 H -0.273 1.273 20 H -0.299 1.299 21 H -0.277 1.277 22 C 0.139 3.861 23 C -0.073 4.073 24 C -0.123 4.123 25 C -0.122 4.122 26 N -0.273 5.273 27 N -0.273 5.273 28 C 0.070 3.930 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.409 0.591 38 H 0.010 0.990 39 H -0.004 1.004 40 H 0.243 0.757 41 H 0.052 0.948 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.032 0.968 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.098 0.902 50 H 0.128 0.872 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 15.296 -18.012 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.198 4.198 4 C -0.093 4.093 5 C -0.228 4.228 6 C -0.198 4.198 7 C 0.381 3.619 8 O -0.455 6.455 9 N -0.337 5.337 10 C 0.029 3.971 11 H 0.099 0.901 12 C 0.068 3.932 13 N -0.346 5.346 14 C -0.368 4.368 15 H 0.105 0.895 16 C -0.264 4.264 17 N -0.603 5.603 18 Si 0.809 3.191 19 H -0.199 1.199 20 H -0.225 1.225 21 H -0.203 1.203 22 C 0.014 3.986 23 C -0.075 4.075 24 C -0.180 4.180 25 C -0.180 4.180 26 N -0.110 5.110 27 N -0.062 5.062 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.171 0.829 37 H 0.246 0.754 38 H 0.028 0.972 39 H 0.014 0.986 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.117 0.883 50 H 0.146 0.854 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.985 14.788 -17.627 25.943 hybrid contribution -1.546 -1.019 0.370 1.889 sum 10.439 13.769 -17.257 24.420 Atomic orbital electron populations 1.21856 0.93138 1.02106 1.03245 1.19855 0.96691 0.95965 0.91349 1.21845 1.01310 0.93568 1.03122 1.21838 0.90061 0.99132 0.98306 1.21570 1.03154 1.05598 0.92429 1.21685 0.97798 1.05963 0.94381 1.17317 0.81777 0.78081 0.84694 1.90739 1.31417 1.54926 1.68407 1.45701 1.27965 1.49132 1.10936 1.22192 0.97388 0.96925 0.80601 0.90084 1.21069 0.90444 0.84896 0.96742 1.44676 1.01428 1.03942 1.84507 1.19450 0.91621 0.84633 1.41074 0.89461 1.25729 0.96000 1.01852 1.02820 1.70246 0.99628 1.32750 1.57643 0.85121 0.76267 0.79348 0.78403 1.19863 1.22519 1.20255 1.21876 0.86104 0.92738 0.97909 1.21982 0.93507 0.95258 0.96707 1.21630 0.96419 0.99569 1.00396 1.21589 1.02298 1.01563 0.92526 1.73454 1.23854 1.20918 0.92777 1.45798 1.19728 1.33034 1.07627 1.22662 0.93221 1.05509 0.85378 0.92892 0.89327 0.93394 0.87349 0.93311 0.92147 0.89420 0.82907 0.75359 0.97151 0.98599 0.94764 0.92942 0.95791 0.91779 0.89933 0.92613 0.94898 0.90044 0.91473 0.88307 0.85356 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.78 71.98 0.63 -1.34 16 2 C -0.02 -0.23 2.89 -11.54 -0.03 -0.27 16 3 C -0.14 -1.38 9.18 71.98 0.66 -0.72 16 4 C 0.03 0.70 5.84 41.40 0.24 0.94 16 5 C -0.20 -6.07 9.95 22.41 0.22 -5.85 16 6 C -0.04 -1.44 7.13 42.46 0.30 -1.14 16 7 C 0.60 25.36 7.82 86.75 0.68 26.04 16 8 O -0.58 -28.64 16.61 -3.94 -0.07 -28.70 16 9 N -0.69 -27.28 4.52 -439.89 -1.99 -29.27 16 10 C 0.13 5.76 2.54 46.18 0.12 5.87 16 11 H 0.08 3.60 7.52 -2.39 -0.02 3.58 16 12 C 0.19 10.76 4.80 86.73 0.42 11.18 16 13 N -0.62 -33.23 3.38 -691.99 -2.34 -35.57 16 14 C -0.24 -13.90 10.28 84.03 0.86 -13.04 16 15 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 16 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 17 N -0.95 -62.03 10.31 21.65 0.22 -61.81 16 18 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 C 0.14 5.69 6.14 86.85 0.53 6.23 16 23 C -0.07 -2.53 0.83 -50.79 -0.04 -2.57 16 24 C -0.12 -3.13 8.22 71.98 0.59 -2.54 16 25 C -0.12 -3.95 8.57 71.98 0.62 -3.33 16 26 N -0.27 -8.27 11.67 -48.18 -0.56 -8.84 16 27 N -0.27 -5.97 3.70 -355.91 -1.32 -7.28 16 28 C 0.07 0.69 10.89 127.77 1.39 2.08 16 29 H 0.05 0.85 7.35 -2.39 -0.02 0.83 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.78 7.42 -2.39 -0.02 0.76 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.15 4.65 7.46 -2.91 -0.02 4.63 16 37 H 0.41 14.69 6.76 -92.71 -0.63 14.06 16 38 H 0.01 0.65 7.38 -2.39 -0.02 0.63 16 39 H 0.00 -0.27 7.41 -2.39 -0.02 -0.29 16 40 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16 42 H 0.02 0.97 7.99 -2.39 -0.02 0.95 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.40 6.44 -2.38 -0.02 1.39 16 46 H 0.03 1.29 7.91 -2.38 -0.02 1.28 16 47 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.13 0.35 7.45 -2.39 -0.02 0.34 16 51 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -84.38 405.26 3.93 -80.45 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.29 Total: 23.19 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 7.66 Total: 17.71 kcal Atomic # 7 Polarization: -136.79 SS G_CDS: -5.98 Total: -142.77 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.07 Total: -28.70 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -84.38 3.93 -80.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974574405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.480 kcal (2) G-P(sol) polarization free energy of solvation -84.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds