Wall clock time and date at job start Tue Mar 31 2020 19:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47242 * 2 1 4 4 C 1.50697 * 109.47206 * 179.97438 * 3 2 1 5 5 C 1.38043 * 126.29280 * 269.99634 * 4 3 2 6 6 C 1.47426 * 126.41645 * 359.97438 * 5 4 3 7 7 O 1.21610 * 119.99464 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00484 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00268 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.88500 * 34.29742 * 9 8 6 11 11 C 1.54911 * 111.00181 * 270.41396 * 9 8 6 12 12 N 1.47419 * 104.83549 * 278.93212 * 11 9 8 13 13 C 1.36936 * 125.64795 * 155.83321 * 12 11 9 14 14 H 1.07999 * 119.99951 * 180.02562 * 13 12 11 15 15 C 1.38809 * 119.99999 * 0.03117 * 13 12 11 16 16 N 1.31616 * 120.00162 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00076 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46887 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47026 * 119.99936 * 17 15 13 20 20 H 1.48495 * 109.47308 * 240.00313 * 17 15 13 21 21 C 1.47025 * 108.70426 * 335.87657 * 12 11 9 22 22 C 1.54428 * 107.28148 * 1.05509 * 21 12 11 23 23 C 1.52992 * 110.72466 * 263.85210 * 22 21 12 24 24 C 1.53002 * 110.76158 * 140.54212 * 22 21 12 25 25 C 1.41288 * 107.17144 * 179.97438 * 5 4 3 26 26 N 1.30454 * 108.02309 * 359.97438 * 25 5 4 27 27 N 1.34265 * 126.28795 * 89.97966 * 4 3 2 28 28 C 1.46490 * 125.75737 * 0.03258 * 27 4 3 29 29 H 1.09000 * 109.47333 * 300.00464 * 1 2 3 30 30 H 1.09001 * 109.46744 * 60.00543 * 1 2 3 31 31 H 1.08998 * 109.46939 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47416 * 240.00017 * 2 1 3 33 33 H 1.09004 * 109.47245 * 119.99462 * 2 1 3 34 34 H 1.09000 * 109.47336 * 59.99538 * 3 2 1 35 35 H 1.09009 * 109.46997 * 300.00047 * 3 2 1 36 36 H 0.97003 * 119.99360 * 359.97438 * 8 6 5 37 37 H 1.08998 * 110.36379 * 37.77866 * 11 9 8 38 38 H 1.09009 * 110.36111 * 160.09558 * 11 9 8 39 39 H 0.96998 * 120.00487 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.88158 * 120.47014 * 21 12 11 41 41 H 1.08997 * 109.87948 * 241.63756 * 21 12 11 42 42 H 1.09007 * 109.47098 * 173.46534 * 23 22 21 43 43 H 1.09002 * 109.47346 * 293.46396 * 23 22 21 44 44 H 1.09000 * 109.47621 * 53.46557 * 23 22 21 45 45 H 1.08999 * 109.46801 * 306.51631 * 24 22 21 46 46 H 1.09001 * 109.46776 * 66.51333 * 24 22 21 47 47 H 1.08998 * 109.47177 * 186.51278 * 24 22 21 48 48 H 1.08001 * 125.99348 * 180.02562 * 25 5 4 49 49 H 1.09002 * 109.47729 * 270.00881 * 28 27 4 50 50 H 1.09002 * 109.46888 * 30.00778 * 28 27 4 51 51 H 1.09001 * 109.47601 * 150.00549 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3636 1.4427 1.1136 6 6 3.9248 1.4436 2.5211 7 8 2.7384 1.4437 2.7880 8 7 4.8385 1.4442 3.5118 9 6 4.4024 1.4445 4.9104 10 1 3.4838 0.8703 5.0311 11 6 4.2266 2.8907 5.4369 12 7 5.5886 3.3332 5.7868 13 6 6.0147 4.6332 5.8468 14 1 7.0374 4.8545 6.1138 15 6 5.1319 5.6666 5.5644 16 7 3.8856 5.3970 5.2386 17 14 5.7129 7.4401 5.6470 18 1 7.1465 7.4738 6.0328 19 1 5.5435 8.0789 4.3171 20 1 4.9109 8.1774 6.6560 21 6 6.4140 2.1475 6.0597 22 6 5.5208 0.9068 5.8418 23 6 4.9337 0.4226 7.1690 24 6 6.3057 -0.2126 5.1548 25 6 5.6987 1.4420 0.6514 26 7 5.6743 1.4409 -0.6530 27 7 4.3421 1.4420 -1.0813 28 6 3.8911 1.4419 -2.4750 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9564 -0.8901 36 1 5.7848 1.4438 3.2988 37 1 3.8083 3.5294 4.6589 38 1 3.5869 2.8979 6.3195 39 1 3.2688 6.1191 5.0409 40 1 7.2608 2.1196 5.3739 41 1 6.7692 2.1723 7.0899 42 1 4.2183 -0.3778 6.9794 43 1 5.7354 0.0498 7.8066 44 1 4.4289 1.2506 7.6667 45 1 6.7617 0.1707 4.2421 46 1 7.0846 -0.5748 5.8258 47 1 5.6299 -1.0312 4.9073 48 1 6.5844 1.4416 1.2694 49 1 3.7786 0.4143 -2.8206 50 1 2.9328 1.9563 -2.5468 51 1 4.6262 1.9552 -3.0949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974776989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:16 Heat of formation + Delta-G solvation = 53.398914 kcal Electronic energy + Delta-G solvation = -30562.274782 eV Core-core repulsion = 26691.688356 eV Total energy + Delta-G solvation = -3870.586427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.39034 -39.32253 -37.52640 -35.29044 -33.72784 -33.33697 -32.71066 -30.65687 -30.56156 -28.35352 -27.26929 -26.55299 -26.33620 -25.53444 -23.47049 -22.27839 -21.74049 -20.62734 -19.78524 -19.42381 -18.46311 -17.29527 -16.63950 -15.87450 -15.72280 -15.48710 -14.92518 -14.60256 -14.49607 -14.05758 -13.85075 -13.78467 -13.61635 -13.47902 -13.13489 -13.04494 -12.81202 -12.66578 -12.52190 -12.22932 -12.08318 -11.84938 -11.66544 -11.50628 -11.33463 -11.22931 -11.10850 -10.93429 -10.90678 -10.74257 -10.56693 -10.32220 -10.12602 -9.85756 -9.72063 -9.62928 -9.37555 -9.22608 -8.61995 -8.51948 -8.12348 -6.74045 -5.57041 -2.99774 1.66597 2.35023 2.37645 3.43148 3.48335 3.51060 3.82729 4.00464 4.44155 4.49497 4.53737 4.83203 4.89642 5.00223 5.02580 5.07838 5.17044 5.25014 5.30747 5.32612 5.36253 5.50519 5.58388 5.62872 5.67628 5.70315 5.79821 5.88160 5.90798 5.95056 6.05834 6.10561 6.17152 6.24607 6.25454 6.30231 6.34550 6.46812 6.54247 6.55856 6.69885 6.77104 6.86772 6.89291 7.12356 7.58498 7.62553 7.69421 7.96834 8.23763 8.47055 8.93597 9.28448 9.90150 10.54459 11.45386 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010227 B = 0.003983 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.229663 B = 7028.840252 C = 7935.837978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.065 4.065 4 C 0.155 3.845 5 C -0.282 4.282 6 C 0.594 3.406 7 O -0.551 6.551 8 N -0.698 5.698 9 C 0.128 3.872 10 H 0.086 0.914 11 C 0.146 3.854 12 N -0.601 5.601 13 C -0.223 4.223 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.916 5.916 17 Si 0.910 3.090 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.144 3.856 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.130 4.130 25 C 0.084 3.916 26 N -0.304 5.304 27 N -0.367 5.367 28 C 0.098 3.902 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.393 0.607 37 H 0.113 0.887 38 H 0.018 0.982 39 H 0.251 0.749 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.187 0.813 49 H 0.076 0.924 50 H 0.088 0.912 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 -13.528 -11.823 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.104 4.104 4 C 0.023 3.977 5 C -0.297 4.297 6 C 0.382 3.618 7 O -0.430 6.430 8 N -0.347 5.347 9 C 0.022 3.978 10 H 0.104 0.896 11 C 0.021 3.979 12 N -0.327 5.327 13 C -0.351 4.351 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.564 5.564 17 Si 0.741 3.259 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C 0.017 3.983 22 C -0.089 4.089 23 C -0.185 4.185 24 C -0.187 4.187 25 C -0.103 4.103 26 N -0.123 5.123 27 N -0.146 5.146 28 C -0.043 4.043 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.228 0.772 37 H 0.131 0.869 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.204 0.796 49 H 0.094 0.906 50 H 0.107 0.893 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.831 -13.301 -12.869 18.598 hybrid contribution 0.520 1.119 0.664 1.402 sum -1.311 -12.181 -12.204 17.293 Atomic orbital electron populations 1.21738 0.95127 1.01662 1.02146 1.21361 0.96160 0.95076 1.02147 1.20552 0.85868 0.98993 1.04946 1.21469 0.94513 0.95479 0.86224 1.20130 0.92605 1.22909 0.94057 1.17044 0.85612 0.75840 0.83350 1.90700 1.16427 1.51698 1.84167 1.45525 1.09055 1.74349 1.05763 1.22465 0.95888 1.00349 0.79061 0.89609 1.22308 0.86620 0.89611 0.99379 1.44462 1.07032 1.00481 1.80707 1.19064 0.95485 0.80895 1.39695 0.90599 1.24767 0.95760 0.97838 1.02068 1.69822 1.03643 1.29837 1.53100 0.86073 0.77614 0.85073 0.77176 1.20606 1.21903 1.21826 1.21419 0.93029 0.86321 0.97486 1.21863 0.96223 0.95276 0.95572 1.21678 1.00256 1.00903 0.95697 1.21705 0.99485 0.97695 0.99857 1.24004 0.97436 0.96981 0.91886 1.77135 0.95984 1.25847 1.13339 1.48266 1.04120 1.56124 1.06137 1.21889 1.01220 1.03459 0.77719 0.91861 0.92999 0.92710 0.92893 0.90918 0.86632 0.91122 0.77214 0.86916 0.96369 0.93841 0.96136 0.95974 0.93105 0.92812 0.91785 0.92938 0.92853 0.92837 0.79584 0.90574 0.89340 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.11 -1.19 5.92 -26.73 -0.16 -1.35 16 3 C -0.06 -0.80 4.90 -27.88 -0.14 -0.94 16 4 C 0.15 2.24 6.26 -81.60 -0.51 1.73 16 5 C -0.28 -4.64 6.13 -105.07 -0.64 -5.28 16 6 C 0.59 11.17 7.81 -12.52 -0.10 11.08 16 7 O -0.55 -11.64 14.53 5.27 0.08 -11.56 16 8 N -0.70 -12.57 4.61 -52.80 -0.24 -12.81 16 9 C 0.13 2.48 2.61 -65.78 -0.17 2.31 16 10 H 0.09 1.69 7.53 -51.93 -0.39 1.30 16 11 C 0.15 3.61 5.27 -2.53 -0.01 3.60 16 12 N -0.60 -15.07 3.39 -170.01 -0.58 -15.64 16 13 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 14 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 15 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 16 N -0.92 -27.33 10.09 55.49 0.56 -26.77 16 17 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 C 0.14 2.89 6.41 -3.01 -0.02 2.87 16 22 C -0.09 -1.47 0.81 -152.62 -0.12 -1.59 16 23 C -0.13 -1.95 8.41 37.15 0.31 -1.63 16 24 C -0.13 -1.73 8.08 37.16 0.30 -1.43 16 25 C 0.08 1.25 11.50 -16.98 -0.20 1.06 16 26 N -0.30 -4.52 12.50 30.86 0.39 -4.14 16 27 N -0.37 -4.78 3.98 -63.35 -0.25 -5.03 16 28 C 0.10 0.79 11.24 59.84 0.67 1.46 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.12 1.77 6.50 -51.93 -0.34 1.43 16 35 H 0.07 0.69 7.05 -51.92 -0.37 0.32 16 36 H 0.39 6.41 5.98 -40.82 -0.24 6.17 16 37 H 0.11 3.25 5.87 -51.93 -0.30 2.95 16 38 H 0.02 0.49 7.80 -51.92 -0.41 0.08 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.02 0.41 7.77 -51.93 -0.40 0.00 16 41 H 0.02 0.45 7.84 -51.93 -0.41 0.05 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.11 7.57 -51.93 -0.39 0.71 16 45 H 0.05 0.67 6.42 -51.93 -0.33 0.34 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.19 2.27 7.50 -52.49 -0.39 1.88 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 0.54 7.02 -51.93 -0.36 0.17 16 51 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -33.91 401.57 -8.23 -42.14 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.54 Total: 6.18 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.67 Total: 4.15 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.13 Total: -64.38 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.91 -8.23 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974776989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.536 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds