Wall clock time and date at job start Tue Mar 31 2020 19:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47242 * 2 1 4 4 C 1.50697 * 109.47206 * 179.97438 * 3 2 1 5 5 C 1.38043 * 126.29280 * 269.99634 * 4 3 2 6 6 C 1.47426 * 126.41645 * 359.97438 * 5 4 3 7 7 O 1.21610 * 119.99464 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00484 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00268 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.88500 * 34.29742 * 9 8 6 11 11 C 1.54911 * 111.00181 * 270.41396 * 9 8 6 12 12 N 1.47419 * 104.83549 * 278.93212 * 11 9 8 13 13 C 1.36936 * 125.64795 * 155.83321 * 12 11 9 14 14 H 1.07999 * 119.99951 * 180.02562 * 13 12 11 15 15 C 1.38809 * 119.99999 * 0.03117 * 13 12 11 16 16 N 1.31616 * 120.00162 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00076 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46887 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47026 * 119.99936 * 17 15 13 20 20 H 1.48495 * 109.47308 * 240.00313 * 17 15 13 21 21 C 1.47025 * 108.70426 * 335.87657 * 12 11 9 22 22 C 1.54428 * 107.28148 * 1.05509 * 21 12 11 23 23 C 1.52992 * 110.72466 * 263.85210 * 22 21 12 24 24 C 1.53002 * 110.76158 * 140.54212 * 22 21 12 25 25 C 1.41288 * 107.17144 * 179.97438 * 5 4 3 26 26 N 1.30454 * 108.02309 * 359.97438 * 25 5 4 27 27 N 1.34265 * 126.28795 * 89.97966 * 4 3 2 28 28 C 1.46490 * 125.75737 * 0.03258 * 27 4 3 29 29 H 1.09000 * 109.47333 * 300.00464 * 1 2 3 30 30 H 1.09001 * 109.46744 * 60.00543 * 1 2 3 31 31 H 1.08998 * 109.46939 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47416 * 240.00017 * 2 1 3 33 33 H 1.09004 * 109.47245 * 119.99462 * 2 1 3 34 34 H 1.09000 * 109.47336 * 59.99538 * 3 2 1 35 35 H 1.09009 * 109.46997 * 300.00047 * 3 2 1 36 36 H 0.97003 * 119.99360 * 359.97438 * 8 6 5 37 37 H 1.08998 * 110.36379 * 37.77866 * 11 9 8 38 38 H 1.09009 * 110.36111 * 160.09558 * 11 9 8 39 39 H 0.96998 * 120.00487 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.88158 * 120.47014 * 21 12 11 41 41 H 1.08997 * 109.87948 * 241.63756 * 21 12 11 42 42 H 1.09007 * 109.47098 * 173.46534 * 23 22 21 43 43 H 1.09002 * 109.47346 * 293.46396 * 23 22 21 44 44 H 1.09000 * 109.47621 * 53.46557 * 23 22 21 45 45 H 1.08999 * 109.46801 * 306.51631 * 24 22 21 46 46 H 1.09001 * 109.46776 * 66.51333 * 24 22 21 47 47 H 1.08998 * 109.47177 * 186.51278 * 24 22 21 48 48 H 1.08001 * 125.99348 * 180.02562 * 25 5 4 49 49 H 1.09002 * 109.47729 * 270.00881 * 28 27 4 50 50 H 1.09002 * 109.46888 * 30.00778 * 28 27 4 51 51 H 1.09001 * 109.47601 * 150.00549 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3636 1.4427 1.1136 6 6 3.9248 1.4436 2.5211 7 8 2.7384 1.4437 2.7880 8 7 4.8385 1.4442 3.5118 9 6 4.4024 1.4445 4.9104 10 1 3.4838 0.8703 5.0311 11 6 4.2266 2.8907 5.4369 12 7 5.5886 3.3332 5.7868 13 6 6.0147 4.6332 5.8468 14 1 7.0374 4.8545 6.1138 15 6 5.1319 5.6666 5.5644 16 7 3.8856 5.3970 5.2386 17 14 5.7129 7.4401 5.6470 18 1 7.1465 7.4738 6.0328 19 1 5.5435 8.0789 4.3171 20 1 4.9109 8.1774 6.6560 21 6 6.4140 2.1475 6.0597 22 6 5.5208 0.9068 5.8418 23 6 4.9337 0.4226 7.1690 24 6 6.3057 -0.2126 5.1548 25 6 5.6987 1.4420 0.6514 26 7 5.6743 1.4409 -0.6530 27 7 4.3421 1.4420 -1.0813 28 6 3.8911 1.4419 -2.4750 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9564 -0.8901 36 1 5.7848 1.4438 3.2988 37 1 3.8083 3.5294 4.6589 38 1 3.5869 2.8979 6.3195 39 1 3.2688 6.1191 5.0409 40 1 7.2608 2.1196 5.3739 41 1 6.7692 2.1723 7.0899 42 1 4.2183 -0.3778 6.9794 43 1 5.7354 0.0498 7.8066 44 1 4.4289 1.2506 7.6667 45 1 6.7617 0.1707 4.2421 46 1 7.0846 -0.5748 5.8258 47 1 5.6299 -1.0312 4.9073 48 1 6.5844 1.4416 1.2694 49 1 3.7786 0.4143 -2.8206 50 1 2.9328 1.9563 -2.5468 51 1 4.6262 1.9552 -3.0949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974776989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:13 Heat of formation + Delta-G solvation = 31.592991 kcal Electronic energy + Delta-G solvation = -30563.220358 eV Core-core repulsion = 26691.688356 eV Total energy + Delta-G solvation = -3871.532003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.50582 -40.85649 -39.06721 -36.25942 -35.58748 -34.50770 -33.99620 -32.57089 -31.63973 -29.92592 -28.38841 -27.70051 -27.41914 -27.27246 -25.11251 -23.60115 -22.67162 -22.20416 -21.17740 -20.77127 -19.85745 -18.66778 -18.51015 -17.31654 -16.89282 -16.63025 -16.50019 -15.86585 -15.66847 -15.60421 -15.40337 -15.24741 -14.89280 -14.61665 -14.44296 -14.11488 -13.99089 -13.69060 -13.61893 -13.55199 -13.44899 -13.09017 -13.00612 -12.96310 -12.82688 -12.60219 -12.53233 -12.42361 -12.17699 -12.03979 -11.92983 -11.75178 -11.71097 -11.54004 -11.38140 -11.29961 -10.81363 -10.66750 -10.37288 -9.92529 -9.51977 -8.80165 -7.72639 -5.17447 0.52641 1.16501 1.42133 1.44553 1.45329 1.55574 2.41571 2.50191 2.61608 3.36647 3.47566 3.52428 3.63431 3.74356 3.89299 4.02615 4.08443 4.11464 4.13845 4.21976 4.34505 4.42008 4.46588 4.51807 4.58766 4.62671 4.63915 4.80200 4.82440 4.87395 4.91850 4.93880 4.96341 4.99398 5.09053 5.15335 5.19073 5.24944 5.34173 5.37070 5.38020 5.40232 5.43797 5.51842 5.57964 5.79764 5.89896 5.91610 6.36075 6.50278 6.80201 7.12886 7.48565 7.82855 8.46627 9.27751 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010227 B = 0.003983 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.229663 B = 7028.840252 C = 7935.837978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.062 4.062 4 C 0.158 3.842 5 C -0.317 4.317 6 C 0.589 3.411 7 O -0.584 6.584 8 N -0.692 5.692 9 C 0.141 3.859 10 H 0.080 0.920 11 C 0.156 3.844 12 N -0.618 5.618 13 C -0.230 4.230 14 H 0.084 0.916 15 C -0.068 4.068 16 N -0.948 5.948 17 Si 0.974 3.026 18 H -0.263 1.263 19 H -0.297 1.297 20 H -0.295 1.295 21 C 0.138 3.862 22 C -0.074 4.074 23 C -0.125 4.125 24 C -0.123 4.123 25 C 0.083 3.917 26 N -0.318 5.318 27 N -0.359 5.359 28 C 0.084 3.916 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.403 0.597 37 H 0.068 0.932 38 H -0.016 1.016 39 H 0.241 0.759 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.206 0.794 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -15.203 -13.611 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.101 4.101 4 C 0.024 3.976 5 C -0.332 4.332 6 C 0.378 3.622 7 O -0.466 6.466 8 N -0.341 5.341 9 C 0.034 3.966 10 H 0.098 0.902 11 C 0.030 3.970 12 N -0.343 5.343 13 C -0.359 4.359 14 H 0.101 0.899 15 C -0.260 4.260 16 N -0.598 5.598 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.224 1.224 20 H -0.222 1.222 21 C 0.014 3.986 22 C -0.075 4.075 23 C -0.183 4.183 24 C -0.181 4.181 25 C -0.103 4.103 26 N -0.138 5.138 27 N -0.138 5.138 28 C -0.055 4.055 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.239 0.761 37 H 0.086 0.914 38 H 0.002 0.998 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.222 0.778 49 H 0.118 0.882 50 H 0.129 0.871 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.257 -15.008 -14.678 20.994 hybrid contribution 0.026 1.639 1.173 2.016 sum -0.231 -13.369 -13.505 19.004 Atomic orbital electron populations 1.21719 0.93938 1.02485 1.02213 1.21299 0.97110 0.93774 1.01805 1.20565 0.84713 1.00059 1.04759 1.21731 0.95351 0.94195 0.86328 1.20087 0.94061 1.25866 0.93160 1.17489 0.85222 0.74943 0.84531 1.90678 1.17808 1.53205 1.84860 1.45419 1.09524 1.74179 1.05021 1.22128 0.97269 0.96755 0.80403 0.90201 1.21939 0.86146 0.92294 0.96671 1.44686 1.07741 1.01229 1.80680 1.19472 0.95724 0.82366 1.38368 0.89861 1.25585 0.95946 1.01790 1.02683 1.70132 1.04775 1.30235 1.54652 0.85063 0.77916 0.80225 0.76488 1.18694 1.22420 1.22245 1.21659 0.93387 0.85868 0.97721 1.21845 0.94698 0.95135 0.95842 1.21680 1.01302 1.00358 0.94965 1.21675 0.99810 0.96370 1.00212 1.24277 0.97424 0.96505 0.92139 1.77086 0.97231 1.26248 1.13192 1.48645 1.03254 1.54373 1.07487 1.22387 1.02543 1.05541 0.75071 0.93841 0.90880 0.91517 0.90607 0.93758 0.90130 0.87895 0.76095 0.91408 0.99835 0.94874 0.94763 0.95705 0.91259 0.90228 0.94795 0.92345 0.90443 0.91664 0.77773 0.88240 0.87059 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.85 16 2 C -0.10 -2.11 5.92 30.59 0.18 -1.93 16 3 C -0.06 -1.51 4.90 29.85 0.15 -1.36 16 4 C 0.16 4.46 6.26 42.14 0.26 4.72 16 5 C -0.32 -10.51 6.13 -20.15 -0.12 -10.63 16 6 C 0.59 23.01 7.81 86.66 0.68 23.68 16 7 O -0.58 -26.22 14.53 -4.06 -0.06 -26.28 16 8 N -0.69 -25.37 4.61 -439.21 -2.03 -27.40 16 9 C 0.14 5.61 2.61 46.39 0.12 5.73 16 10 H 0.08 3.28 7.53 -2.39 -0.02 3.27 16 11 C 0.16 8.13 5.27 86.86 0.46 8.59 16 12 N -0.62 -31.74 3.39 -691.79 -2.35 -34.09 16 13 C -0.23 -13.01 10.27 84.03 0.86 -12.15 16 14 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 15 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 16 N -0.95 -59.56 10.09 21.65 0.22 -59.34 16 17 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 21 C 0.14 5.45 6.41 86.76 0.56 6.01 16 22 C -0.07 -2.38 0.81 -50.96 -0.04 -2.43 16 23 C -0.13 -3.66 8.41 71.98 0.61 -3.06 16 24 C -0.12 -2.90 8.08 71.98 0.58 -2.32 16 25 C 0.08 2.42 11.50 85.65 0.99 3.40 16 26 N -0.32 -9.00 12.50 -56.27 -0.70 -9.70 16 27 N -0.36 -8.65 3.98 -354.33 -1.41 -10.06 16 28 C 0.08 1.07 11.24 127.77 1.44 2.50 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.08 2.59 6.50 -2.39 -0.02 2.58 16 35 H 0.10 1.77 7.05 -2.38 -0.02 1.76 16 36 H 0.40 12.98 5.98 -92.71 -0.55 12.42 16 37 H 0.07 4.19 5.87 -2.39 -0.01 4.18 16 38 H -0.02 -0.93 7.80 -2.38 -0.02 -0.94 16 39 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.03 1.27 7.77 -2.39 -0.02 1.26 16 41 H 0.02 0.98 7.84 -2.39 -0.02 0.96 16 42 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 45 H 0.06 1.32 6.42 -2.39 -0.02 1.30 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.21 4.77 7.50 -2.91 -0.02 4.75 16 49 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 50 H 0.11 0.93 7.02 -2.39 -0.02 0.91 16 51 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -78.82 401.57 3.96 -74.87 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.37 Total: 27.33 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 7.89 Total: 15.42 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -6.27 Total: -140.59 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.06 Total: -26.28 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -78.82 3.96 -74.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974776989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.461 kcal (2) G-P(sol) polarization free energy of solvation -78.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds