Wall clock time and date at job start Tue Mar 31 2020 19:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 C 1.50706 * 109.46885 * 119.99403 * 2 1 3 5 5 C 1.39661 * 126.06939 * 275.00129 * 4 2 1 6 6 C 1.38413 * 105.36114 * 179.72168 * 5 4 2 7 7 C 1.47157 * 126.89046 * 180.26250 * 6 5 4 8 8 O 1.21625 * 120.00594 * 185.72268 * 7 6 5 9 9 N 1.34785 * 119.99838 * 5.72443 * 7 6 5 10 10 C 1.46497 * 119.99852 * 185.14524 * 9 7 6 11 11 H 1.08992 * 110.88739 * 325.70195 * 10 9 7 12 12 C 1.54916 * 111.00249 * 89.58088 * 10 9 7 13 13 N 1.47527 * 104.78068 * 81.08917 * 12 10 9 14 14 C 1.36940 * 125.63305 * 204.08480 * 13 12 10 15 15 H 1.08000 * 120.00138 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00173 * 0.03548 * 14 13 12 17 17 N 1.31621 * 119.99705 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00225 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46946 * 90.00250 * 18 16 14 20 20 H 1.48498 * 109.47111 * 210.00073 * 18 16 14 21 21 H 1.48498 * 109.47063 * 330.00389 * 18 16 14 22 22 C 1.47024 * 108.71860 * 24.11604 * 13 12 10 23 23 C 1.54325 * 107.26853 * 358.94505 * 22 13 12 24 24 C 1.53000 * 110.71669 * 219.44281 * 23 22 13 25 25 C 1.53003 * 110.71868 * 96.17264 * 23 22 13 26 26 N 1.36599 * 106.22530 * 0.40364 * 6 5 4 27 27 C 1.46503 * 125.18698 * 179.84570 * 26 6 5 28 28 N 1.28443 * 109.62118 * 359.57493 * 26 6 5 29 29 H 1.09001 * 109.47309 * 300.00572 * 1 2 3 30 30 H 1.08998 * 109.46963 * 60.00530 * 1 2 3 31 31 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47309 * 239.99428 * 2 1 3 33 33 H 1.08994 * 109.47223 * 59.99366 * 3 2 1 34 34 H 1.08996 * 109.46949 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46810 * 299.99564 * 3 2 1 36 36 H 1.08003 * 127.32770 * 359.94409 * 5 4 2 37 37 H 0.96998 * 119.99772 * 5.13893 * 9 7 6 38 38 H 1.08998 * 110.36407 * 199.89973 * 12 10 9 39 39 H 1.08995 * 110.36918 * 322.22541 * 12 10 9 40 40 H 0.96998 * 120.00122 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.88207 * 239.52545 * 22 13 12 42 42 H 1.08997 * 110.01074 * 118.43493 * 22 13 12 43 43 H 1.08998 * 109.47295 * 173.52188 * 24 23 22 44 44 H 1.09001 * 109.47019 * 293.52382 * 24 23 22 45 45 H 1.08998 * 109.47179 * 53.52016 * 24 23 22 46 46 H 1.08995 * 109.46761 * 306.47146 * 25 23 22 47 47 H 1.08991 * 109.47220 * 66.47635 * 25 23 22 48 48 H 1.09003 * 109.46422 * 186.47800 * 25 23 22 49 49 H 1.09003 * 109.47019 * 265.82349 * 27 26 6 50 50 H 1.09005 * 109.47048 * 145.82400 * 27 26 6 51 51 H 1.08995 * 109.47289 * 25.82361 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.2136 -0.1403 2.4926 6 6 2.6793 -1.1672 3.2954 7 6 3.0210 -1.0859 4.7244 8 8 3.5192 -2.0427 5.2860 9 7 2.7819 0.0491 5.4109 10 6 3.2239 0.1704 6.8023 11 1 3.1581 -0.7886 7.3160 12 6 4.6606 0.7447 6.8804 13 7 4.4917 2.2027 6.7318 14 6 5.4465 3.0746 6.2809 15 1 5.2240 4.1290 6.2083 16 6 6.7005 2.6033 5.9169 17 7 6.9715 1.3183 6.0048 18 14 8.0028 3.7926 5.3012 19 1 8.7986 4.2935 6.4505 20 1 8.8991 3.0937 4.3455 21 1 7.3458 4.9359 4.6183 22 6 3.1290 2.5648 7.1485 23 6 2.4110 1.2594 7.5511 24 6 0.9570 1.2724 7.0752 25 6 2.4850 1.0455 9.0643 26 7 2.7610 -2.2707 2.4943 27 6 3.2133 -3.5956 2.9260 28 7 2.3756 -1.9708 1.3064 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.0265 0.8833 2.7819 37 1 2.3171 0.7855 4.9837 38 1 5.1104 0.5113 7.8454 39 1 5.2722 0.3483 6.0700 40 1 7.8475 0.9889 5.7501 41 1 2.6014 3.0378 6.3202 42 1 3.1674 3.2444 7.9997 43 1 0.5031 0.3002 7.2670 44 1 0.4055 2.0434 7.6134 45 1 0.9264 1.4832 6.0063 46 1 3.5245 1.0972 9.3881 47 1 1.9082 1.8201 9.5694 48 1 2.0752 0.0666 9.3133 49 1 4.2782 -3.7013 2.7190 50 1 2.6599 -4.3628 2.3843 51 1 3.0382 -3.7086 3.9959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977414158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:22 Heat of formation + Delta-G solvation = 57.375963 kcal Electronic energy + Delta-G solvation = -30611.134222 eV Core-core repulsion = 26740.720253 eV Total energy + Delta-G solvation = -3870.413969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.42557 -39.60740 -37.82225 -35.93397 -33.91258 -33.27488 -32.14967 -30.83451 -30.65386 -28.10816 -27.22984 -26.84186 -26.62941 -25.62973 -23.92316 -22.98064 -22.14814 -20.55622 -19.85706 -19.40083 -18.50455 -17.45079 -16.74333 -16.18830 -16.00454 -15.64203 -14.88543 -14.65061 -14.24004 -14.10017 -13.91474 -13.87904 -13.71346 -13.54464 -13.25292 -13.17873 -12.76696 -12.54113 -12.38051 -12.21447 -12.11841 -11.94524 -11.78079 -11.43257 -11.32944 -11.22965 -11.19608 -11.14086 -11.02195 -10.79671 -10.48448 -10.41606 -10.22867 -9.98916 -9.84390 -9.71197 -9.65148 -8.97668 -8.75072 -8.70118 -8.39852 -6.83063 -5.64715 -3.07400 1.49643 2.53339 2.66787 3.39403 3.44265 3.46774 3.47325 3.64787 4.41451 4.47889 4.74918 4.91487 4.98901 5.01566 5.14056 5.21315 5.25302 5.26853 5.39539 5.41127 5.51390 5.58358 5.59278 5.59731 5.65663 5.70080 5.76381 5.81818 5.86204 5.94103 5.99643 6.00380 6.07475 6.15382 6.21127 6.23595 6.30651 6.36658 6.46792 6.56753 6.60746 6.66903 6.70126 6.86661 6.93431 7.43862 7.60828 7.81116 7.91077 8.20938 8.36067 8.53199 9.20387 9.82293 10.45874 11.38245 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009169 B = 0.004273 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.912268 B = 6550.501892 C = 7534.758695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 C -0.145 4.145 4 C 0.030 3.970 5 C -0.183 4.183 6 C -0.024 4.024 7 C 0.591 3.409 8 O -0.547 6.547 9 N -0.683 5.683 10 C 0.124 3.876 11 H 0.090 0.910 12 C 0.146 3.854 13 N -0.600 5.600 14 C -0.224 4.224 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.918 5.918 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.143 3.857 23 C -0.087 4.087 24 C -0.131 4.131 25 C -0.128 4.128 26 N -0.260 5.260 27 C 0.087 3.913 28 N -0.284 5.284 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.157 0.843 37 H 0.399 0.601 38 H 0.022 0.978 39 H 0.113 0.887 40 H 0.252 0.748 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.526 -4.284 -6.017 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.203 4.203 4 C -0.127 4.127 5 C -0.212 4.212 6 C -0.152 4.152 7 C 0.376 3.624 8 O -0.426 6.426 9 N -0.332 5.332 10 C 0.019 3.981 11 H 0.108 0.892 12 C 0.021 3.979 13 N -0.327 5.327 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.566 5.566 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.017 3.983 23 C -0.088 4.088 24 C -0.189 4.189 25 C -0.186 4.186 26 N -0.046 5.046 27 C -0.053 4.053 28 N -0.116 5.116 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.175 0.825 37 H 0.235 0.765 38 H 0.040 0.960 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.102 0.898 50 H 0.106 0.894 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.768 -6.095 -6.237 16.297 hybrid contribution 0.658 1.688 0.033 1.812 sum -13.110 -4.407 -6.204 15.158 Atomic orbital electron populations 1.21807 0.94156 1.01916 1.01954 1.19389 0.95412 0.95039 0.92937 1.21835 1.01701 0.94590 1.02143 1.21848 1.04425 0.90154 0.96235 1.22026 1.06769 0.99428 0.92944 1.21509 1.10403 0.89008 0.94326 1.16791 0.78479 0.83530 0.83608 1.90742 1.45018 1.36805 1.70018 1.45474 1.58123 1.15814 1.13798 1.22608 0.97825 0.98175 0.79490 0.89226 1.22339 0.90229 0.83544 1.01817 1.44472 1.08459 1.03576 1.76150 1.19023 0.91034 0.89397 1.35817 0.90537 1.24773 0.97594 0.96178 1.01826 1.69790 1.21422 1.11414 1.53962 0.86124 0.81679 0.79726 0.78262 1.21654 1.21746 1.20716 1.21412 0.87123 0.93261 0.96524 1.21848 0.94546 0.96597 0.95815 1.21724 0.95205 1.01370 1.00616 1.21685 1.02599 1.00763 0.93527 1.45461 1.44676 1.09666 1.04838 1.22328 1.01221 0.78533 1.03258 1.73049 1.17555 1.17959 1.03077 0.92329 0.92193 0.92706 0.90074 0.92008 0.92190 0.92126 0.82516 0.76504 0.95972 0.86989 0.93723 0.96027 0.95783 0.92794 0.92609 0.92922 0.91707 0.92629 0.93040 0.89814 0.89419 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.14 -1.47 8.79 37.16 0.33 -1.14 16 4 C 0.03 0.43 6.13 -82.47 -0.51 -0.08 16 5 C -0.18 -2.73 9.64 -38.99 -0.38 -3.10 16 6 C -0.02 -0.40 6.96 -82.06 -0.57 -0.97 16 7 C 0.59 10.88 7.78 -12.64 -0.10 10.78 16 8 O -0.55 -11.22 14.34 5.26 0.08 -11.15 16 9 N -0.68 -11.89 4.60 -52.89 -0.24 -12.13 16 10 C 0.12 2.32 2.65 -65.78 -0.17 2.14 16 11 H 0.09 1.69 7.47 -51.93 -0.39 1.30 16 12 C 0.15 3.50 5.28 -2.47 -0.01 3.48 16 13 N -0.60 -14.60 3.40 -169.99 -0.58 -15.18 16 14 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 15 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 17 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 18 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.14 2.76 6.41 -3.06 -0.02 2.74 16 23 C -0.09 -1.39 0.80 -152.67 -0.12 -1.51 16 24 C -0.13 -1.67 8.07 37.16 0.30 -1.37 16 25 C -0.13 -1.86 8.41 37.16 0.31 -1.55 16 26 N -0.26 -4.11 3.75 -63.88 -0.24 -4.35 16 27 C 0.09 1.10 10.89 59.85 0.65 1.76 16 28 N -0.28 -4.44 11.90 33.64 0.40 -4.04 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.61 7.37 -51.93 -0.38 0.23 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.16 2.05 7.09 -52.48 -0.37 1.68 16 37 H 0.40 6.30 6.11 -40.82 -0.25 6.05 16 38 H 0.02 0.57 7.80 -51.93 -0.41 0.17 16 39 H 0.11 3.15 5.88 -51.93 -0.31 2.84 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 42 H 0.02 0.47 7.84 -51.93 -0.41 0.07 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.65 6.42 -51.93 -0.33 0.31 16 46 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.11 1.50 6.20 -51.93 -0.32 1.18 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -32.19 400.43 -8.10 -40.29 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.58 Total: 6.50 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.51 Total: 3.29 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.10 Total: -62.01 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.19 -8.10 -40.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977414158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.665 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds