Wall clock time and date at job start Tue Mar 31 2020 19:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 C 1.50706 * 109.46885 * 119.99403 * 2 1 3 5 5 C 1.39661 * 126.06939 * 275.00129 * 4 2 1 6 6 C 1.38413 * 105.36114 * 179.72168 * 5 4 2 7 7 C 1.47157 * 126.89046 * 180.26250 * 6 5 4 8 8 O 1.21625 * 120.00594 * 185.72268 * 7 6 5 9 9 N 1.34785 * 119.99838 * 5.72443 * 7 6 5 10 10 C 1.46497 * 119.99852 * 185.14524 * 9 7 6 11 11 H 1.08992 * 110.88739 * 325.70195 * 10 9 7 12 12 C 1.54916 * 111.00249 * 89.58088 * 10 9 7 13 13 N 1.47527 * 104.78068 * 81.08917 * 12 10 9 14 14 C 1.36940 * 125.63305 * 204.08480 * 13 12 10 15 15 H 1.08000 * 120.00138 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00173 * 0.03548 * 14 13 12 17 17 N 1.31621 * 119.99705 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00225 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46946 * 90.00250 * 18 16 14 20 20 H 1.48498 * 109.47111 * 210.00073 * 18 16 14 21 21 H 1.48498 * 109.47063 * 330.00389 * 18 16 14 22 22 C 1.47024 * 108.71860 * 24.11604 * 13 12 10 23 23 C 1.54325 * 107.26853 * 358.94505 * 22 13 12 24 24 C 1.53000 * 110.71669 * 219.44281 * 23 22 13 25 25 C 1.53003 * 110.71868 * 96.17264 * 23 22 13 26 26 N 1.36599 * 106.22530 * 0.40364 * 6 5 4 27 27 C 1.46503 * 125.18698 * 179.84570 * 26 6 5 28 28 N 1.28443 * 109.62118 * 359.57493 * 26 6 5 29 29 H 1.09001 * 109.47309 * 300.00572 * 1 2 3 30 30 H 1.08998 * 109.46963 * 60.00530 * 1 2 3 31 31 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47309 * 239.99428 * 2 1 3 33 33 H 1.08994 * 109.47223 * 59.99366 * 3 2 1 34 34 H 1.08996 * 109.46949 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46810 * 299.99564 * 3 2 1 36 36 H 1.08003 * 127.32770 * 359.94409 * 5 4 2 37 37 H 0.96998 * 119.99772 * 5.13893 * 9 7 6 38 38 H 1.08998 * 110.36407 * 199.89973 * 12 10 9 39 39 H 1.08995 * 110.36918 * 322.22541 * 12 10 9 40 40 H 0.96998 * 120.00122 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.88207 * 239.52545 * 22 13 12 42 42 H 1.08997 * 110.01074 * 118.43493 * 22 13 12 43 43 H 1.08998 * 109.47295 * 173.52188 * 24 23 22 44 44 H 1.09001 * 109.47019 * 293.52382 * 24 23 22 45 45 H 1.08998 * 109.47179 * 53.52016 * 24 23 22 46 46 H 1.08995 * 109.46761 * 306.47146 * 25 23 22 47 47 H 1.08991 * 109.47220 * 66.47635 * 25 23 22 48 48 H 1.09003 * 109.46422 * 186.47800 * 25 23 22 49 49 H 1.09003 * 109.47019 * 265.82349 * 27 26 6 50 50 H 1.09005 * 109.47048 * 145.82400 * 27 26 6 51 51 H 1.08995 * 109.47289 * 25.82361 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.2136 -0.1403 2.4926 6 6 2.6793 -1.1672 3.2954 7 6 3.0210 -1.0859 4.7244 8 8 3.5192 -2.0427 5.2860 9 7 2.7819 0.0491 5.4109 10 6 3.2239 0.1704 6.8023 11 1 3.1581 -0.7886 7.3160 12 6 4.6606 0.7447 6.8804 13 7 4.4917 2.2027 6.7318 14 6 5.4465 3.0746 6.2809 15 1 5.2240 4.1290 6.2083 16 6 6.7005 2.6033 5.9169 17 7 6.9715 1.3183 6.0048 18 14 8.0028 3.7926 5.3012 19 1 8.7986 4.2935 6.4505 20 1 8.8991 3.0937 4.3455 21 1 7.3458 4.9359 4.6183 22 6 3.1290 2.5648 7.1485 23 6 2.4110 1.2594 7.5511 24 6 0.9570 1.2724 7.0752 25 6 2.4850 1.0455 9.0643 26 7 2.7610 -2.2707 2.4943 27 6 3.2133 -3.5956 2.9260 28 7 2.3756 -1.9708 1.3064 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.0265 0.8833 2.7819 37 1 2.3171 0.7855 4.9837 38 1 5.1104 0.5113 7.8454 39 1 5.2722 0.3483 6.0700 40 1 7.8475 0.9889 5.7501 41 1 2.6014 3.0378 6.3202 42 1 3.1674 3.2444 7.9997 43 1 0.5031 0.3002 7.2670 44 1 0.4055 2.0434 7.6134 45 1 0.9264 1.4832 6.0063 46 1 3.5245 1.0972 9.3881 47 1 1.9082 1.8201 9.5694 48 1 2.0752 0.0666 9.3133 49 1 4.2782 -3.7013 2.7190 50 1 2.6599 -4.3628 2.3843 51 1 3.0382 -3.7086 3.9959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977414158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:21 Heat of formation + Delta-G solvation = 37.539037 kcal Electronic energy + Delta-G solvation = -30611.994416 eV Core-core repulsion = 26740.720253 eV Total energy + Delta-G solvation = -3871.274163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.60833 -41.10580 -39.33779 -36.86742 -35.69611 -34.74159 -33.22844 -32.59127 -32.04837 -29.71929 -28.11036 -27.92684 -27.68194 -27.38968 -25.47873 -24.27037 -23.39328 -22.09865 -21.32276 -20.68647 -19.77645 -18.71593 -18.69202 -17.50659 -17.30097 -17.06703 -16.51621 -16.05602 -15.72107 -15.35599 -15.31832 -15.08900 -14.95762 -14.77774 -14.59445 -14.20895 -14.09183 -13.74916 -13.67433 -13.45704 -13.40625 -13.03377 -13.00003 -12.86266 -12.84248 -12.63731 -12.57402 -12.29876 -12.14215 -12.10293 -12.00431 -11.78529 -11.76300 -11.46860 -11.45421 -11.35330 -11.13729 -10.75628 -10.28892 -9.93498 -9.85953 -8.83395 -7.75234 -5.19231 0.20294 1.36960 1.44916 1.46072 1.53204 1.54658 2.09214 2.29233 2.49325 3.35080 3.38120 3.50488 3.58571 3.70343 3.91582 3.97804 4.08203 4.14134 4.24700 4.30579 4.33337 4.41844 4.46765 4.51566 4.55806 4.61168 4.70430 4.76447 4.85890 4.89281 4.90621 4.94847 5.04293 5.07185 5.07490 5.11973 5.21115 5.21687 5.28492 5.34989 5.43804 5.46935 5.49485 5.53500 5.54415 5.65470 5.72992 5.82455 6.31330 6.45291 7.01630 7.10152 7.12274 7.80560 8.43787 9.25441 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009169 B = 0.004273 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.912268 B = 6550.501892 C = 7534.758695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.008 4.008 3 C -0.143 4.143 4 C 0.028 3.972 5 C -0.178 4.178 6 C -0.050 4.050 7 C 0.588 3.412 8 O -0.576 6.576 9 N -0.675 5.675 10 C 0.137 3.863 11 H 0.087 0.913 12 C 0.155 3.845 13 N -0.617 5.617 14 C -0.228 4.228 15 H 0.085 0.915 16 C -0.067 4.067 17 N -0.949 5.949 18 Si 0.973 3.027 19 H -0.289 1.289 20 H -0.301 1.301 21 H -0.265 1.265 22 C 0.137 3.863 23 C -0.073 4.073 24 C -0.125 4.125 25 C -0.126 4.126 26 N -0.267 5.267 27 C 0.083 3.917 28 N -0.294 5.294 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.174 0.826 37 H 0.409 0.591 38 H -0.010 1.010 39 H 0.068 0.932 40 H 0.241 0.759 41 H 0.036 0.964 42 H 0.027 0.973 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.034 0.966 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.116 0.884 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.352 -2.791 -6.941 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.128 4.128 5 C -0.207 4.207 6 C -0.178 4.178 7 C 0.374 3.626 8 O -0.456 6.456 9 N -0.324 5.324 10 C 0.031 3.969 11 H 0.105 0.895 12 C 0.028 3.972 13 N -0.343 5.343 14 C -0.358 4.358 15 H 0.103 0.897 16 C -0.259 4.259 17 N -0.599 5.599 18 Si 0.802 3.198 19 H -0.216 1.216 20 H -0.228 1.228 21 H -0.189 1.189 22 C 0.013 3.987 23 C -0.074 4.074 24 C -0.183 4.183 25 C -0.184 4.184 26 N -0.054 5.054 27 C -0.056 4.056 28 N -0.127 5.127 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.192 0.808 37 H 0.246 0.754 38 H 0.007 0.993 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.134 0.866 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.645 -4.568 -7.160 18.687 hybrid contribution 1.534 1.234 0.318 1.994 sum -15.112 -3.334 -6.842 16.920 Atomic orbital electron populations 1.21773 0.92461 1.01863 1.03178 1.19551 0.96718 0.95131 0.91382 1.21836 1.00566 0.94191 1.03466 1.22445 1.03458 0.89757 0.97150 1.22305 1.05674 0.99776 0.92917 1.21435 1.12288 0.90344 0.93733 1.17089 0.77802 0.83303 0.84363 1.90721 1.46254 1.37845 1.70823 1.45342 1.57807 1.15962 1.13323 1.22292 0.95258 0.98669 0.80667 0.89505 1.21971 0.92902 0.84010 0.98285 1.44692 1.10077 1.03465 1.76049 1.19431 0.91671 0.90222 1.34427 0.89717 1.25559 0.99805 0.97528 1.03024 1.70097 1.21035 1.13188 1.55594 0.85150 0.79084 0.78159 0.77425 1.21583 1.22850 1.18928 1.21655 0.84973 0.95177 0.96917 1.21833 0.96047 0.93084 0.96408 1.21700 0.92367 1.03013 1.01203 1.21691 1.01334 1.02841 0.92506 1.45733 1.44681 1.10199 1.04780 1.22460 1.01702 0.78350 1.03115 1.73056 1.17866 1.18839 1.02981 0.92137 0.89947 0.93401 0.89882 0.91742 0.93941 0.89795 0.80843 0.75371 0.99265 0.91429 0.94918 0.94560 0.95491 0.91599 0.90217 0.92359 0.94663 0.90108 0.91180 0.89811 0.86572 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.18 71.98 0.66 -1.46 16 2 C -0.01 -0.15 3.38 -11.54 -0.04 -0.19 16 3 C -0.14 -2.57 8.79 71.98 0.63 -1.94 16 4 C 0.03 0.77 6.13 43.05 0.26 1.04 16 5 C -0.18 -5.12 9.64 22.66 0.22 -4.90 16 6 C -0.05 -1.66 6.96 40.79 0.28 -1.38 16 7 C 0.59 22.02 7.78 86.58 0.67 22.69 16 8 O -0.58 -24.49 14.34 -4.11 -0.06 -24.55 16 9 N -0.67 -23.32 4.60 -439.47 -2.02 -25.34 16 10 C 0.14 5.13 2.65 46.39 0.12 5.26 16 11 H 0.09 3.33 7.47 -2.39 -0.02 3.31 16 12 C 0.15 7.71 5.28 86.84 0.46 8.17 16 13 N -0.62 -30.36 3.40 -691.71 -2.35 -32.71 16 14 C -0.23 -12.47 10.27 84.03 0.86 -11.61 16 15 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 17 N -0.95 -58.20 10.09 21.65 0.22 -57.98 16 18 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.14 5.12 6.41 86.73 0.56 5.67 16 23 C -0.07 -2.18 0.80 -50.99 -0.04 -2.22 16 24 C -0.13 -2.71 8.07 71.98 0.58 -2.13 16 25 C -0.13 -3.43 8.41 71.98 0.61 -2.83 16 26 N -0.27 -8.42 3.75 -356.01 -1.33 -9.75 16 27 C 0.08 2.13 10.89 127.77 1.39 3.53 16 28 N -0.29 -9.00 11.90 -47.50 -0.57 -9.56 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.12 7.37 -2.39 -0.02 1.10 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.17 4.23 7.09 -2.91 -0.02 4.20 16 37 H 0.41 12.36 6.11 -92.71 -0.57 11.79 16 38 H -0.01 -0.57 7.80 -2.39 -0.02 -0.59 16 39 H 0.07 4.02 5.88 -2.39 -0.01 4.01 16 40 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.04 1.27 7.76 -2.39 -0.02 1.25 16 42 H 0.03 1.01 7.84 -2.39 -0.02 0.99 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 1.21 6.42 -2.39 -0.02 1.19 16 46 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 49 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 51 H 0.10 2.84 6.20 -2.39 -0.01 2.83 16 Total: -1.00 -73.00 400.43 3.97 -69.03 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.35 Total: 28.32 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 7.70 Total: 14.35 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -6.05 Total: -135.35 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.06 Total: -24.55 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.00 3.97 -69.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977414158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.574 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds