Wall clock time and date at job start Tue Mar 31 2020 19:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47583 * 2 1 4 4 C 1.50703 * 109.47327 * 120.00359 * 2 1 3 5 5 C 1.39678 * 126.06405 * 275.26678 * 4 2 1 6 6 C 1.38401 * 105.35514 * 180.10489 * 5 4 2 7 7 C 1.47165 * 126.88278 * 179.91467 * 6 5 4 8 8 O 1.21631 * 120.00422 * 185.01475 * 7 6 5 9 9 N 1.34780 * 120.00081 * 5.01894 * 7 6 5 10 10 C 1.46493 * 120.00188 * 185.27966 * 9 7 6 11 11 H 1.08997 * 110.89067 * 31.11876 * 10 9 7 12 12 C 1.54914 * 111.03705 * 267.21243 * 10 9 7 13 13 N 1.47424 * 104.83192 * 278.91917 * 12 10 9 14 14 C 1.36933 * 125.64423 * 156.13612 * 13 12 10 15 15 H 1.07993 * 120.00534 * 322.70615 * 14 13 12 16 16 C 1.38815 * 119.99960 * 142.71046 * 14 13 12 17 17 N 1.31621 * 120.00176 * 166.08257 * 16 14 13 18 18 Si 1.86805 * 120.00003 * 346.08178 * 16 14 13 19 19 H 1.48503 * 109.46978 * 84.87150 * 18 16 14 20 20 H 1.48496 * 109.47228 * 204.87286 * 18 16 14 21 21 H 1.48499 * 109.47022 * 324.87448 * 18 16 14 22 22 C 1.47022 * 108.70400 * 335.87260 * 13 12 10 23 23 C 1.54325 * 107.27380 * 1.05627 * 22 13 12 24 24 C 1.52996 * 110.72063 * 140.55423 * 23 22 13 25 25 C 1.52997 * 110.72021 * 263.83035 * 23 22 13 26 26 N 1.36594 * 106.23429 * 359.65087 * 6 5 4 27 27 C 1.46509 * 125.19099 * 180.20427 * 26 6 5 28 28 N 1.28438 * 109.62246 * 0.22735 * 26 6 5 29 29 H 1.08997 * 109.47166 * 299.99966 * 1 2 3 30 30 H 1.09004 * 109.47084 * 60.00292 * 1 2 3 31 31 H 1.08995 * 109.46902 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47139 * 239.99517 * 2 1 3 33 33 H 1.08993 * 109.47362 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47080 * 300.00190 * 3 2 1 35 35 H 1.09001 * 109.46424 * 59.99618 * 3 2 1 36 36 H 1.08000 * 127.32400 * 0.02562 * 5 4 2 37 37 H 0.97004 * 120.00002 * 5.27591 * 9 7 6 38 38 H 1.09001 * 110.36585 * 160.08413 * 12 10 9 39 39 H 1.08998 * 110.36507 * 37.75845 * 12 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.88213 * 120.47427 * 22 13 12 42 42 H 1.09005 * 109.88436 * 241.64111 * 22 13 12 43 43 H 1.09002 * 109.47192 * 61.45265 * 24 23 22 44 44 H 1.08996 * 109.47359 * 181.45770 * 24 23 22 45 45 H 1.08999 * 109.47569 * 301.45842 * 24 23 22 46 46 H 1.09001 * 109.47225 * 58.54896 * 25 23 22 47 47 H 1.09003 * 109.46764 * 178.53923 * 25 23 22 48 48 H 1.08998 * 109.47225 * 298.54249 * 25 23 22 49 49 H 1.09002 * 109.46937 * 84.30485 * 27 26 6 50 50 H 1.08997 * 109.46696 * 204.30730 * 27 26 6 51 51 H 1.08997 * 109.46750 * 324.30654 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.2088 -0.1418 2.4939 6 6 2.6850 -1.1660 3.2936 7 6 3.0335 -1.0830 4.7210 8 8 3.5289 -2.0413 5.2829 9 7 2.8037 0.0549 5.4058 10 6 3.2552 0.1783 6.7939 11 1 4.1618 -0.4031 6.9609 12 6 2.1374 -0.2402 7.7815 13 7 1.2636 0.9426 7.8858 14 6 -0.0563 0.9301 8.2501 15 1 -0.6978 0.1233 7.9279 16 6 -0.5698 1.9545 9.0335 17 7 -1.8722 2.0982 9.1581 18 14 0.5875 3.1292 9.9111 19 1 0.9792 4.2222 8.9851 20 1 -0.0971 3.7058 11.0960 21 1 1.8006 2.3936 10.3496 22 6 2.0458 2.1385 7.5400 23 6 3.4699 1.6661 7.1788 24 6 4.0181 2.4588 5.9906 25 6 4.4018 1.7838 8.3864 26 7 2.7611 -2.2709 2.4941 27 6 3.2138 -3.5958 2.9256 28 7 2.3756 -1.9710 1.3062 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 2.0159 0.8803 2.7847 37 1 2.3395 0.7922 4.9794 38 1 2.5630 -0.4844 8.7548 39 1 1.5804 -1.0896 7.3861 40 1 -2.2310 2.8138 9.7059 41 1 1.5945 2.6423 6.6853 42 1 2.0852 2.8154 8.3936 43 1 4.0769 3.5148 6.2544 44 1 5.0125 2.0918 5.7367 45 1 3.3555 2.3347 5.1341 46 1 4.0081 1.1866 9.2089 47 1 5.3937 1.4212 8.1165 48 1 4.4677 2.8274 8.6941 49 1 2.3808 -4.1353 3.3765 50 1 3.5830 -4.1519 2.0639 51 1 4.0141 -3.4858 3.6572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977414160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:27 Heat of formation + Delta-G solvation = 58.345822 kcal Electronic energy + Delta-G solvation = -30396.668645 eV Core-core repulsion = 26526.296733 eV Total energy + Delta-G solvation = -3870.371913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.61563 -39.93988 -38.13756 -36.06520 -34.11980 -33.32454 -32.32919 -31.50349 -30.94631 -28.41040 -27.32365 -27.02504 -26.80252 -25.93122 -24.16141 -23.12202 -22.25654 -20.73592 -20.12450 -19.62904 -18.77133 -17.74802 -16.98217 -16.36052 -16.29085 -15.77637 -15.27262 -14.92763 -14.55314 -14.33635 -14.14354 -14.01816 -13.80066 -13.59487 -13.41372 -13.17150 -13.01156 -12.76245 -12.64247 -12.54100 -12.25253 -12.21918 -12.10053 -11.66586 -11.61519 -11.54935 -11.32151 -11.27378 -11.14847 -10.88459 -10.78324 -10.60030 -10.50429 -10.32738 -9.97212 -9.83374 -9.50827 -9.20245 -8.92801 -8.85699 -8.54631 -6.82209 -6.00697 -3.47646 1.26785 2.33191 2.49685 3.24734 3.29247 3.31160 3.42286 3.47143 4.25898 4.48812 4.55090 4.68327 4.78739 4.88222 4.91481 5.03597 5.09348 5.10275 5.18022 5.22346 5.26726 5.34470 5.42032 5.47458 5.51820 5.52785 5.57194 5.63482 5.73197 5.76918 5.79175 5.85451 5.88977 5.93297 6.04637 6.12644 6.15493 6.18740 6.21684 6.34710 6.35101 6.43133 6.53167 6.61456 6.68190 6.71978 6.83148 7.56625 7.89314 8.02199 8.22798 8.31192 8.81821 9.62999 10.19459 11.15413 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003581 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.769287 B = 7816.778815 C = 8447.739113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.008 4.008 3 C -0.144 4.144 4 C 0.031 3.969 5 C -0.181 4.181 6 C -0.030 4.030 7 C 0.591 3.409 8 O -0.547 6.547 9 N -0.687 5.687 10 C 0.141 3.859 11 H 0.098 0.902 12 C 0.121 3.879 13 N -0.605 5.605 14 C -0.246 4.246 15 H 0.083 0.917 16 C 0.033 3.967 17 N -0.908 5.908 18 Si 0.895 3.105 19 H -0.285 1.285 20 H -0.304 1.304 21 H -0.272 1.272 22 C 0.126 3.874 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.132 4.132 26 N -0.259 5.259 27 C 0.088 3.912 28 N -0.280 5.280 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.158 0.842 37 H 0.405 0.595 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.264 0.736 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.607 -2.636 -15.804 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 C -0.202 4.202 4 C -0.125 4.125 5 C -0.210 4.210 6 C -0.159 4.159 7 C 0.376 3.624 8 O -0.426 6.426 9 N -0.337 5.337 10 C 0.035 3.965 11 H 0.116 0.884 12 C -0.005 4.005 13 N -0.333 5.333 14 C -0.374 4.374 15 H 0.100 0.900 16 C -0.167 4.167 17 N -0.550 5.550 18 Si 0.726 3.274 19 H -0.212 1.212 20 H -0.232 1.232 21 H -0.198 1.198 22 C 0.002 3.998 23 C -0.089 4.089 24 C -0.190 4.190 25 C -0.190 4.190 26 N -0.046 5.046 27 C -0.052 4.052 28 N -0.112 5.112 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.176 0.824 37 H 0.242 0.758 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.102 0.898 50 H 0.110 0.890 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.881 -4.377 -15.845 20.884 hybrid contribution 0.096 1.748 0.978 2.005 sum 12.976 -2.628 -14.868 19.909 Atomic orbital electron populations 1.21829 0.93861 1.02200 1.02251 1.19404 0.95697 0.94901 0.92805 1.21832 1.01217 0.94761 1.02381 1.21899 1.04219 0.90094 0.96309 1.22055 1.06275 0.99746 0.92930 1.21415 1.11241 0.89083 0.94120 1.16852 0.78484 0.83330 0.83691 1.90762 1.45654 1.36078 1.70095 1.45541 1.58184 1.16387 1.13608 1.22240 0.98103 0.96075 0.80032 0.88424 1.22089 0.91044 0.92002 0.95327 1.44607 1.07804 1.00622 1.80245 1.18545 0.81761 1.10876 1.26206 0.89961 1.25457 0.95475 0.98884 0.96904 1.69776 1.10787 1.33152 1.41299 0.86714 0.80788 0.80715 0.79148 1.21244 1.23216 1.19764 1.21829 0.88741 0.91446 0.97790 1.21880 0.96731 0.94185 0.96096 1.21726 1.00475 0.99882 0.96919 1.21738 0.97988 1.02154 0.97130 1.45491 1.44605 1.09513 1.04967 1.22308 1.02241 0.78759 1.01896 1.73091 1.17347 1.17731 1.03078 0.92049 0.92068 0.92577 0.90031 0.92476 0.91985 0.91966 0.82408 0.75829 0.94686 0.93014 0.92584 0.94406 0.95399 0.92270 0.92540 0.92638 0.91766 0.92644 0.92333 0.89784 0.88998 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.18 37.16 0.34 -0.98 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.14 -1.15 8.79 37.16 0.33 -0.82 16 4 C 0.03 0.39 6.13 -82.47 -0.51 -0.11 16 5 C -0.18 -2.30 9.65 -38.98 -0.38 -2.67 16 6 C -0.03 -0.43 6.96 -82.06 -0.57 -1.00 16 7 C 0.59 9.18 7.79 -12.64 -0.10 9.08 16 8 O -0.55 -9.49 14.49 5.25 0.08 -9.41 16 9 N -0.69 -10.27 4.49 -52.88 -0.24 -10.51 16 10 C 0.14 2.26 2.63 -65.78 -0.17 2.08 16 11 H 0.10 1.51 7.52 -51.93 -0.39 1.12 16 12 C 0.12 2.43 6.61 -2.53 -0.02 2.41 16 13 N -0.61 -14.06 2.95 -170.07 -0.50 -14.56 16 14 C -0.25 -6.87 10.52 -15.06 -0.16 -7.03 16 15 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 16 C 0.03 0.95 5.47 -17.43 -0.10 0.86 16 17 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 18 Si 0.89 22.37 24.63 -169.99 -4.19 18.18 16 19 H -0.28 -6.86 6.85 56.52 0.39 -6.47 16 20 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 21 H -0.27 -6.62 7.07 56.52 0.40 -6.22 16 22 C 0.13 2.55 5.17 -3.06 -0.02 2.53 16 23 C -0.09 -1.35 0.80 -152.67 -0.12 -1.47 16 24 C -0.13 -1.62 8.16 37.16 0.30 -1.32 16 25 C -0.13 -1.89 8.44 37.16 0.31 -1.57 16 26 N -0.26 -3.55 3.75 -63.88 -0.24 -3.79 16 27 C 0.09 0.94 10.71 59.85 0.64 1.58 16 28 N -0.28 -3.87 11.90 33.64 0.40 -3.47 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.50 7.37 -51.93 -0.38 0.11 16 36 H 0.16 1.68 7.09 -52.49 -0.37 1.31 16 37 H 0.41 5.67 6.20 -40.82 -0.25 5.42 16 38 H 0.04 0.70 7.71 -51.93 -0.40 0.30 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.04 0.77 7.82 -51.93 -0.41 0.36 16 42 H 0.03 0.62 3.14 -51.93 -0.16 0.46 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.64 6.34 -51.93 -0.33 0.31 16 46 H 0.06 1.02 7.44 -51.93 -0.39 0.63 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.11 1.21 6.54 -51.93 -0.34 0.87 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -32.90 396.98 -6.94 -39.84 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.49 Total: 3.45 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.52 Total: 1.18 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.20 Total: -59.22 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.19 Total: 18.18 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.90 -6.94 -39.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977414160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.185 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds