Wall clock time and date at job start Tue Mar 31 2020 19:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47583 * 2 1 4 4 C 1.50703 * 109.47327 * 120.00359 * 2 1 3 5 5 C 1.39678 * 126.06405 * 275.26678 * 4 2 1 6 6 C 1.38401 * 105.35514 * 180.10489 * 5 4 2 7 7 C 1.47165 * 126.88278 * 179.91467 * 6 5 4 8 8 O 1.21631 * 120.00422 * 185.01475 * 7 6 5 9 9 N 1.34780 * 120.00081 * 5.01894 * 7 6 5 10 10 C 1.46493 * 120.00188 * 185.27966 * 9 7 6 11 11 H 1.08997 * 110.89067 * 31.11876 * 10 9 7 12 12 C 1.54914 * 111.03705 * 267.21243 * 10 9 7 13 13 N 1.47424 * 104.83192 * 278.91917 * 12 10 9 14 14 C 1.36933 * 125.64423 * 156.13612 * 13 12 10 15 15 H 1.07993 * 120.00534 * 322.70615 * 14 13 12 16 16 C 1.38815 * 119.99960 * 142.71046 * 14 13 12 17 17 N 1.31621 * 120.00176 * 166.08257 * 16 14 13 18 18 Si 1.86805 * 120.00003 * 346.08178 * 16 14 13 19 19 H 1.48503 * 109.46978 * 84.87150 * 18 16 14 20 20 H 1.48496 * 109.47228 * 204.87286 * 18 16 14 21 21 H 1.48499 * 109.47022 * 324.87448 * 18 16 14 22 22 C 1.47022 * 108.70400 * 335.87260 * 13 12 10 23 23 C 1.54325 * 107.27380 * 1.05627 * 22 13 12 24 24 C 1.52996 * 110.72063 * 140.55423 * 23 22 13 25 25 C 1.52997 * 110.72021 * 263.83035 * 23 22 13 26 26 N 1.36594 * 106.23429 * 359.65087 * 6 5 4 27 27 C 1.46509 * 125.19099 * 180.20427 * 26 6 5 28 28 N 1.28438 * 109.62246 * 0.22735 * 26 6 5 29 29 H 1.08997 * 109.47166 * 299.99966 * 1 2 3 30 30 H 1.09004 * 109.47084 * 60.00292 * 1 2 3 31 31 H 1.08995 * 109.46902 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47139 * 239.99517 * 2 1 3 33 33 H 1.08993 * 109.47362 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47080 * 300.00190 * 3 2 1 35 35 H 1.09001 * 109.46424 * 59.99618 * 3 2 1 36 36 H 1.08000 * 127.32400 * 0.02562 * 5 4 2 37 37 H 0.97004 * 120.00002 * 5.27591 * 9 7 6 38 38 H 1.09001 * 110.36585 * 160.08413 * 12 10 9 39 39 H 1.08998 * 110.36507 * 37.75845 * 12 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.88213 * 120.47427 * 22 13 12 42 42 H 1.09005 * 109.88436 * 241.64111 * 22 13 12 43 43 H 1.09002 * 109.47192 * 61.45265 * 24 23 22 44 44 H 1.08996 * 109.47359 * 181.45770 * 24 23 22 45 45 H 1.08999 * 109.47569 * 301.45842 * 24 23 22 46 46 H 1.09001 * 109.47225 * 58.54896 * 25 23 22 47 47 H 1.09003 * 109.46764 * 178.53923 * 25 23 22 48 48 H 1.08998 * 109.47225 * 298.54249 * 25 23 22 49 49 H 1.09002 * 109.46937 * 84.30485 * 27 26 6 50 50 H 1.08997 * 109.46696 * 204.30730 * 27 26 6 51 51 H 1.08997 * 109.46750 * 324.30654 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.2088 -0.1418 2.4939 6 6 2.6850 -1.1660 3.2936 7 6 3.0335 -1.0830 4.7210 8 8 3.5289 -2.0413 5.2829 9 7 2.8037 0.0549 5.4058 10 6 3.2552 0.1783 6.7939 11 1 4.1618 -0.4031 6.9609 12 6 2.1374 -0.2402 7.7815 13 7 1.2636 0.9426 7.8858 14 6 -0.0563 0.9301 8.2501 15 1 -0.6978 0.1233 7.9279 16 6 -0.5698 1.9545 9.0335 17 7 -1.8722 2.0982 9.1581 18 14 0.5875 3.1292 9.9111 19 1 0.9792 4.2222 8.9851 20 1 -0.0971 3.7058 11.0960 21 1 1.8006 2.3936 10.3496 22 6 2.0458 2.1385 7.5400 23 6 3.4699 1.6661 7.1788 24 6 4.0181 2.4588 5.9906 25 6 4.4018 1.7838 8.3864 26 7 2.7611 -2.2709 2.4941 27 6 3.2138 -3.5958 2.9256 28 7 2.3756 -1.9710 1.3062 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 2.0159 0.8803 2.7847 37 1 2.3395 0.7922 4.9794 38 1 2.5630 -0.4844 8.7548 39 1 1.5804 -1.0896 7.3861 40 1 -2.2310 2.8138 9.7059 41 1 1.5945 2.6423 6.6853 42 1 2.0852 2.8154 8.3936 43 1 4.0769 3.5148 6.2544 44 1 5.0125 2.0918 5.7367 45 1 3.3555 2.3347 5.1341 46 1 4.0081 1.1866 9.2089 47 1 5.3937 1.4212 8.1165 48 1 4.4677 2.8274 8.6941 49 1 2.3808 -4.1353 3.3765 50 1 3.5830 -4.1519 2.0639 51 1 4.0141 -3.4858 3.6572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977414160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:25 Heat of formation + Delta-G solvation = 36.918836 kcal Electronic energy + Delta-G solvation = -30397.597789 eV Core-core repulsion = 26526.296733 eV Total energy + Delta-G solvation = -3871.301057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.62320 -41.27102 -39.49247 -36.87577 -35.75231 -34.72019 -33.39595 -33.24175 -32.09854 -29.91284 -28.16666 -27.96377 -27.67591 -27.60065 -25.62610 -24.27571 -23.38200 -22.22285 -21.34731 -20.78588 -19.92927 -19.15988 -18.63706 -17.60506 -17.35309 -17.11099 -16.88601 -16.00257 -15.83499 -15.56773 -15.34981 -15.10014 -15.00348 -14.91466 -14.64519 -14.39804 -14.22554 -14.18511 -13.67369 -13.50771 -13.42579 -13.38788 -13.26702 -12.94090 -12.87446 -12.80938 -12.58059 -12.31983 -12.29908 -12.15101 -11.99983 -11.87609 -11.78037 -11.67621 -11.47052 -11.27492 -11.14143 -10.75674 -10.34767 -10.03764 -9.87346 -8.77663 -8.22767 -5.67067 0.17219 1.28853 1.33984 1.38389 1.50006 1.51784 2.08748 2.16709 2.38656 3.04777 3.28937 3.37612 3.44364 3.49573 3.75642 3.90920 3.94264 4.14190 4.24777 4.27015 4.29846 4.33172 4.33626 4.45389 4.54134 4.56721 4.59310 4.65455 4.74002 4.79330 4.85291 4.88027 4.89266 4.93413 5.01938 5.04346 5.06023 5.09237 5.18570 5.20681 5.30907 5.39881 5.42774 5.46339 5.49474 5.54950 5.71842 5.81763 6.10627 6.36620 6.78000 6.96783 7.06343 7.47851 8.12658 8.97641 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003581 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.769287 B = 7816.778815 C = 8447.739113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.026 3.974 5 C -0.176 4.176 6 C -0.052 4.052 7 C 0.593 3.407 8 O -0.569 6.569 9 N -0.683 5.683 10 C 0.155 3.845 11 H 0.112 0.888 12 C 0.118 3.882 13 N -0.618 5.618 14 C -0.242 4.242 15 H 0.038 0.962 16 C -0.022 4.022 17 N -0.956 5.956 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.311 1.311 21 H -0.262 1.262 22 C 0.120 3.880 23 C -0.074 4.074 24 C -0.129 4.129 25 C -0.134 4.134 26 N -0.266 5.266 27 C 0.084 3.916 28 N -0.293 5.293 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.177 0.823 37 H 0.410 0.590 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.265 0.735 41 H 0.037 0.963 42 H 0.017 0.983 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.115 0.885 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.366 -1.017 -17.259 23.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.130 4.130 5 C -0.205 4.205 6 C -0.180 4.180 7 C 0.380 3.620 8 O -0.449 6.449 9 N -0.333 5.333 10 C 0.049 3.951 11 H 0.130 0.870 12 C -0.008 4.008 13 N -0.345 5.345 14 C -0.371 4.371 15 H 0.056 0.944 16 C -0.218 4.218 17 N -0.601 5.601 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.240 1.240 21 H -0.187 1.187 22 C -0.004 4.004 23 C -0.076 4.076 24 C -0.186 4.186 25 C -0.191 4.191 26 N -0.054 5.054 27 C -0.055 4.055 28 N -0.127 5.127 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.194 0.806 37 H 0.248 0.752 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.133 0.867 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.675 -2.762 -17.330 23.530 hybrid contribution -0.837 1.114 1.351 1.941 sum 14.838 -1.648 -15.979 21.868 Atomic orbital electron populations 1.21815 0.93630 1.01553 1.02896 1.19538 0.95784 0.95762 0.91672 1.21820 1.01194 0.93531 1.03280 1.22437 1.03507 0.89780 0.97278 1.22352 1.05132 1.00300 0.92734 1.21393 1.12779 0.90135 0.93720 1.17011 0.77895 0.82955 0.84185 1.90747 1.46682 1.36756 1.70714 1.45476 1.58181 1.16529 1.13114 1.22067 0.96613 0.96922 0.79475 0.87001 1.22169 0.91624 0.90268 0.96691 1.44621 1.06807 1.02963 1.80141 1.18357 0.83640 1.09408 1.25679 0.94411 1.26109 0.96796 1.01109 0.97787 1.69918 1.12826 1.34570 1.42740 0.85668 0.78707 0.78997 0.77726 1.19193 1.23967 1.18670 1.21989 0.91293 0.89969 0.97146 1.21868 0.94140 0.93408 0.98151 1.21734 1.01504 1.00045 0.95360 1.21779 0.99034 1.02601 0.95706 1.45765 1.44613 1.10117 1.04860 1.22448 1.02121 0.78098 1.02831 1.73091 1.17794 1.18556 1.03231 0.92885 0.89935 0.93871 0.89538 0.92482 0.90232 0.91962 0.80557 0.75194 0.94537 0.95444 0.92639 0.94525 0.96512 0.91080 0.90364 0.92090 0.93827 0.89536 0.91403 0.89689 0.86686 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.18 71.98 0.66 -1.72 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -1.88 8.79 71.98 0.63 -1.24 16 4 C 0.03 0.62 6.13 43.05 0.26 0.88 16 5 C -0.18 -4.22 9.65 22.66 0.22 -4.00 16 6 C -0.05 -1.44 6.96 40.79 0.28 -1.16 16 7 C 0.59 17.93 7.79 86.59 0.67 18.61 16 8 O -0.57 -19.46 14.49 -4.13 -0.06 -19.52 16 9 N -0.68 -19.45 4.49 -439.46 -1.97 -21.42 16 10 C 0.15 4.69 2.63 46.39 0.12 4.81 16 11 H 0.11 3.17 7.52 -2.39 -0.02 3.15 16 12 C 0.12 4.75 6.61 86.86 0.57 5.32 16 13 N -0.62 -28.85 2.95 -691.98 -2.04 -30.89 16 14 C -0.24 -13.97 10.52 84.03 0.88 -13.08 16 15 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 16 C -0.02 -1.28 5.47 84.86 0.46 -0.82 16 17 N -0.96 -60.17 13.97 21.65 0.30 -59.86 16 18 Si 0.96 46.37 24.63 68.60 1.69 48.06 16 19 H -0.27 -11.91 6.85 99.48 0.68 -11.23 16 20 H -0.31 -15.26 7.11 99.48 0.71 -14.56 16 21 H -0.26 -12.06 7.07 99.48 0.70 -11.36 16 22 C 0.12 4.62 5.17 86.73 0.45 5.07 16 23 C -0.07 -2.07 0.80 -50.99 -0.04 -2.11 16 24 C -0.13 -2.60 8.16 71.98 0.59 -2.02 16 25 C -0.13 -3.31 8.44 71.98 0.61 -2.71 16 26 N -0.27 -7.13 3.75 -356.01 -1.33 -8.46 16 27 C 0.08 1.77 10.71 127.77 1.37 3.14 16 28 N -0.29 -7.85 11.90 -47.49 -0.57 -8.41 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.03 8.14 -2.38 -0.02 1.02 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.83 7.37 -2.39 -0.02 0.82 16 36 H 0.18 3.38 7.09 -2.91 -0.02 3.36 16 37 H 0.41 10.78 6.20 -92.71 -0.57 10.20 16 38 H 0.04 1.46 7.71 -2.39 -0.02 1.45 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 41 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 42 H 0.02 0.71 3.14 -2.38 -0.01 0.71 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 45 H 0.06 1.17 6.34 -2.39 -0.02 1.16 16 46 H 0.04 1.26 7.44 -2.39 -0.02 1.24 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.10 2.27 6.54 -2.39 -0.02 2.26 16 Total: -1.00 -73.61 396.98 4.05 -69.57 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.32 Total: 22.16 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 7.71 Total: 8.80 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -5.61 Total: -129.06 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.06 Total: -19.52 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.69 Total: 48.06 kcal Total: -73.61 4.05 -69.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977414160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.485 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds