Wall clock time and date at job start Tue Mar 31 2020 19:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 C 1.50698 * 109.46883 * 119.99664 * 2 1 3 5 5 N 1.30457 * 125.98902 * 300.21347 * 4 2 1 6 6 N 1.39934 * 108.89398 * 180.26325 * 5 4 2 7 7 C 1.46498 * 125.74977 * 179.69326 * 6 5 4 8 8 C 1.34254 * 108.49355 * 359.71648 * 6 5 4 9 9 C 1.38038 * 107.41711 * 359.97438 * 8 6 5 10 10 C 1.47438 * 126.41584 * 180.02562 * 9 8 6 11 11 O 1.21603 * 120.00200 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99783 * 359.75036 * 10 9 8 13 13 C 1.46499 * 120.00195 * 180.27836 * 12 10 9 14 14 H 1.09004 * 110.88523 * 37.42319 * 13 12 10 15 15 C 1.54906 * 111.00063 * 273.54577 * 13 12 10 16 16 N 1.47427 * 104.82982 * 278.93214 * 15 13 12 17 17 C 1.36936 * 125.64795 * 155.83826 * 16 15 13 18 18 H 1.08002 * 120.00027 * 180.02562 * 17 16 15 19 19 C 1.38808 * 120.00118 * 0.02562 * 17 16 15 20 20 N 1.31626 * 120.00126 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00233 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47062 * 89.99711 * 21 19 17 23 23 H 1.48499 * 109.46885 * 210.00183 * 21 19 17 24 24 H 1.48499 * 109.46608 * 329.99892 * 21 19 17 25 25 C 1.47016 * 108.70305 * 335.87062 * 16 15 13 26 26 C 1.54323 * 107.27181 * 1.06044 * 25 16 15 27 27 C 1.52995 * 110.72265 * 263.82544 * 26 25 16 28 28 C 1.53001 * 110.71954 * 140.55379 * 26 25 16 29 29 H 1.08994 * 109.47445 * 300.00298 * 1 2 3 30 30 H 1.09000 * 109.46624 * 60.00608 * 1 2 3 31 31 H 1.08993 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47445 * 239.99702 * 2 1 3 33 33 H 1.09004 * 109.46727 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46981 * 299.99173 * 3 2 1 35 35 H 1.08994 * 109.47310 * 59.99620 * 3 2 1 36 36 H 1.09008 * 109.46883 * 270.02186 * 7 6 5 37 37 H 1.08998 * 109.47566 * 30.02162 * 7 6 5 38 38 H 1.09000 * 109.46886 * 150.02704 * 7 6 5 39 39 H 1.07999 * 126.29056 * 180.02562 * 8 6 5 40 40 H 0.97000 * 119.99736 * 0.27108 * 12 10 9 41 41 H 1.09001 * 110.37365 * 37.76943 * 15 13 12 42 42 H 1.09002 * 110.36694 * 160.09861 * 15 13 12 43 43 H 0.96996 * 120.00084 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.88001 * 120.47622 * 25 16 15 45 45 H 1.08997 * 109.88913 * 241.64152 * 25 16 15 46 46 H 1.08998 * 109.47425 * 173.52285 * 27 26 25 47 47 H 1.08995 * 109.47310 * 293.52492 * 27 26 25 48 48 H 1.09008 * 109.47073 * 53.52209 * 27 26 25 49 49 H 1.09006 * 109.47290 * 306.47694 * 28 26 25 50 50 H 1.08995 * 109.47362 * 66.47895 * 28 26 25 51 51 H 1.09003 * 109.47263 * 186.47962 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7870 -0.3702 2.4658 6 7 2.4329 -1.2705 3.3205 7 6 2.4090 -1.2280 4.7847 8 6 3.0785 -2.1793 2.5725 9 6 2.8476 -1.8641 1.2486 10 6 3.3609 -2.5914 0.0733 11 8 3.0836 -2.2090 -1.0473 12 7 4.1422 -3.6767 0.2408 13 6 4.6574 -4.3958 -0.9270 14 1 4.9192 -3.7022 -1.7261 15 6 3.6393 -5.4535 -1.4213 16 7 3.8367 -6.6121 -0.5312 17 6 2.9050 -7.5783 -0.2604 18 1 3.1480 -8.3904 0.4089 19 6 1.6481 -7.5141 -0.8461 20 7 1.3518 -6.5242 -1.6614 21 14 0.3768 -8.8319 -0.4761 22 1 -0.4264 -8.4269 0.7055 23 1 -0.5181 -8.9995 -1.6492 24 1 1.0644 -10.1167 -0.1904 25 6 5.1994 -6.5579 0.0180 26 6 5.8690 -5.2854 -0.5425 27 6 6.7114 -5.6156 -1.7762 28 6 6.7214 -4.6049 0.5305 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.2396 -0.6203 5.1441 37 1 1.4680 -0.7921 5.1203 38 1 2.5019 -2.2399 5.1791 39 1 3.6693 -3.0057 2.9392 40 1 4.3635 -3.9817 1.1346 41 1 2.6220 -5.0732 -1.3288 42 1 3.8499 -5.7288 -2.4547 43 1 0.4734 -6.4792 -2.0704 44 1 5.1587 -6.5068 1.1061 45 1 5.7599 -7.4394 -0.2931 46 1 7.0803 -4.6919 -2.2221 47 1 7.5553 -6.2401 -1.4835 48 1 6.0985 -6.1500 -2.5022 49 1 6.1155 -4.4314 1.4199 50 1 7.5652 -5.2461 0.7850 51 1 7.0906 -3.6521 0.1510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977594248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:33 Heat of formation + Delta-G solvation = 57.216820 kcal Electronic energy + Delta-G solvation = -30657.365564 eV Core-core repulsion = 26786.944694 eV Total energy + Delta-G solvation = -3870.420870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.34041 -39.35726 -37.56811 -35.64248 -33.76054 -32.97152 -32.35596 -30.67993 -30.22484 -28.02291 -27.07807 -26.95033 -26.55275 -25.57275 -23.66287 -22.49913 -22.10463 -20.42090 -19.52860 -19.14134 -18.50638 -17.33036 -16.67179 -15.84613 -15.66734 -15.55090 -14.65711 -14.54807 -14.43301 -14.04146 -13.91237 -13.75054 -13.66474 -13.29600 -13.11042 -12.99483 -12.91617 -12.56263 -12.41177 -12.11523 -11.97543 -11.88781 -11.71153 -11.27644 -11.26743 -11.14280 -11.00310 -10.97504 -10.84625 -10.74568 -10.53541 -10.34642 -10.17641 -9.89015 -9.73985 -9.65213 -9.27475 -9.14872 -8.63091 -8.55638 -8.17514 -6.76325 -5.58292 -3.01711 1.64958 2.37474 2.39164 3.41325 3.46065 3.49004 3.80000 3.99702 4.35449 4.51639 4.63207 4.82686 4.92523 5.02032 5.14549 5.18035 5.26766 5.31089 5.37250 5.39091 5.55759 5.56607 5.66456 5.73172 5.75604 5.81371 5.83755 5.90145 5.99980 6.05733 6.08188 6.14059 6.17909 6.21635 6.29804 6.45016 6.46424 6.47809 6.51794 6.65693 6.72906 6.74185 6.82774 6.87310 7.09685 7.57373 7.66638 7.69581 7.95785 8.19913 8.46090 8.91736 9.26562 9.88202 10.52503 11.43811 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.004242 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.312392 B = 6599.707507 C = 7515.247650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.137 4.137 4 C 0.142 3.858 5 N -0.302 5.302 6 N -0.367 5.367 7 C 0.100 3.900 8 C 0.095 3.905 9 C -0.274 4.274 10 C 0.594 3.406 11 O -0.543 6.543 12 N -0.701 5.701 13 C 0.128 3.872 14 H 0.085 0.915 15 C 0.146 3.854 16 N -0.600 5.600 17 C -0.226 4.226 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.914 5.914 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.144 3.856 26 C -0.088 4.088 27 C -0.128 4.128 28 C -0.130 4.130 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.179 0.821 40 H 0.390 0.610 41 H 0.115 0.885 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 11.969 10.028 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.026 4.026 5 N -0.123 5.123 6 N -0.145 5.145 7 C -0.042 4.042 8 C -0.056 4.056 9 C -0.289 4.289 10 C 0.381 3.619 11 O -0.421 6.421 12 N -0.350 5.350 13 C 0.022 3.978 14 H 0.103 0.897 15 C 0.020 3.980 16 N -0.327 5.327 17 C -0.355 4.355 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.018 3.982 26 C -0.089 4.089 27 C -0.185 4.185 28 C -0.187 4.187 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.196 0.804 40 H 0.225 0.775 41 H 0.132 0.868 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.218 12.990 10.112 17.597 hybrid contribution -0.114 -1.758 0.424 1.812 sum 6.103 11.232 10.536 16.565 Atomic orbital electron populations 1.21767 0.94049 1.02252 1.01600 1.19986 0.95936 0.95398 0.93855 1.21764 1.00958 0.95015 1.01720 1.22361 0.93930 0.93078 0.93216 1.77090 1.20182 1.14761 1.00229 1.48227 1.38008 1.21453 1.06838 1.21918 1.04362 1.03955 0.73917 1.23029 0.96772 0.94668 0.91141 1.20387 1.12578 1.03229 0.92692 1.17104 0.77758 0.79645 0.87419 1.90674 1.58622 1.67893 1.24919 1.45619 1.51315 1.28483 1.09622 1.22467 0.94319 0.93661 0.87341 0.89688 1.22317 0.99858 0.84555 0.91222 1.44453 1.08446 1.27112 1.52646 1.18995 0.91656 1.01823 1.22986 0.90708 1.24780 0.97702 0.98470 0.99403 1.69812 1.21052 1.31398 1.33917 0.86152 0.81614 0.80934 0.77240 1.21786 1.21662 1.20826 1.21387 0.87371 0.93918 0.95502 1.21839 0.94589 0.96402 0.96080 1.21678 0.98932 1.00900 0.97037 1.21708 0.99064 1.00020 0.97944 0.92734 0.92106 0.92408 0.86147 0.92859 0.92112 0.92690 0.90569 0.89108 0.89208 0.80365 0.77531 0.86789 0.96322 0.93691 0.96320 0.95983 0.93054 0.92801 0.91734 0.93147 0.92796 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.18 37.16 0.34 -1.60 16 2 C -0.03 -0.48 3.26 -91.77 -0.30 -0.78 16 3 C -0.14 -1.72 9.18 37.16 0.34 -1.38 16 4 C 0.14 2.31 5.77 -82.02 -0.47 1.84 16 5 N -0.30 -4.59 12.50 33.90 0.42 -4.17 16 6 N -0.37 -4.58 3.98 -67.60 -0.27 -4.85 16 7 C 0.10 0.72 11.44 59.85 0.68 1.41 16 8 C 0.09 1.24 10.99 -16.57 -0.18 1.06 16 9 C -0.27 -4.56 6.13 -105.07 -0.64 -5.20 16 10 C 0.59 11.35 7.81 -12.51 -0.10 11.25 16 11 O -0.54 -11.97 14.31 5.27 0.08 -11.89 16 12 N -0.70 -12.41 4.68 -52.80 -0.25 -12.65 16 13 C 0.13 2.45 2.56 -65.79 -0.17 2.29 16 14 H 0.09 1.67 7.63 -51.93 -0.40 1.27 16 15 C 0.15 3.59 5.27 -2.53 -0.01 3.58 16 16 N -0.60 -14.91 3.39 -170.08 -0.58 -15.49 16 17 C -0.23 -6.23 10.27 -15.06 -0.15 -6.38 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 20 N -0.91 -27.24 10.09 55.49 0.56 -26.68 16 21 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.14 2.85 6.41 -3.07 -0.02 2.83 16 26 C -0.09 -1.44 0.81 -152.68 -0.12 -1.56 16 27 C -0.13 -1.92 8.41 37.16 0.31 -1.60 16 28 C -0.13 -1.65 8.07 37.16 0.30 -1.35 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.12 2.12 5.60 -51.93 -0.29 1.82 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.18 1.71 7.46 -52.49 -0.39 1.32 16 40 H 0.39 6.03 5.81 -40.82 -0.24 5.79 16 41 H 0.11 3.29 5.87 -51.93 -0.30 2.99 16 42 H 0.02 0.50 7.80 -51.93 -0.41 0.09 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.02 0.36 7.77 -51.93 -0.40 -0.04 16 45 H 0.02 0.44 7.84 -51.93 -0.41 0.04 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 1.10 7.57 -51.92 -0.39 0.71 16 49 H 0.05 0.60 6.35 -51.93 -0.33 0.27 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -34.36 402.55 -7.88 -42.25 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.60 Total: 6.07 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.29 Total: 4.08 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.11 Total: -63.84 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.36 -7.88 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977594248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.465 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds