Wall clock time and date at job start Tue Mar 31 2020 19:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 C 1.50698 * 109.46883 * 119.99664 * 2 1 3 5 5 N 1.30457 * 125.98902 * 300.21347 * 4 2 1 6 6 N 1.39934 * 108.89398 * 180.26325 * 5 4 2 7 7 C 1.46498 * 125.74977 * 179.69326 * 6 5 4 8 8 C 1.34254 * 108.49355 * 359.71648 * 6 5 4 9 9 C 1.38038 * 107.41711 * 359.97438 * 8 6 5 10 10 C 1.47438 * 126.41584 * 180.02562 * 9 8 6 11 11 O 1.21603 * 120.00200 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99783 * 359.75036 * 10 9 8 13 13 C 1.46499 * 120.00195 * 180.27836 * 12 10 9 14 14 H 1.09004 * 110.88523 * 37.42319 * 13 12 10 15 15 C 1.54906 * 111.00063 * 273.54577 * 13 12 10 16 16 N 1.47427 * 104.82982 * 278.93214 * 15 13 12 17 17 C 1.36936 * 125.64795 * 155.83826 * 16 15 13 18 18 H 1.08002 * 120.00027 * 180.02562 * 17 16 15 19 19 C 1.38808 * 120.00118 * 0.02562 * 17 16 15 20 20 N 1.31626 * 120.00126 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00233 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47062 * 89.99711 * 21 19 17 23 23 H 1.48499 * 109.46885 * 210.00183 * 21 19 17 24 24 H 1.48499 * 109.46608 * 329.99892 * 21 19 17 25 25 C 1.47016 * 108.70305 * 335.87062 * 16 15 13 26 26 C 1.54323 * 107.27181 * 1.06044 * 25 16 15 27 27 C 1.52995 * 110.72265 * 263.82544 * 26 25 16 28 28 C 1.53001 * 110.71954 * 140.55379 * 26 25 16 29 29 H 1.08994 * 109.47445 * 300.00298 * 1 2 3 30 30 H 1.09000 * 109.46624 * 60.00608 * 1 2 3 31 31 H 1.08993 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47445 * 239.99702 * 2 1 3 33 33 H 1.09004 * 109.46727 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46981 * 299.99173 * 3 2 1 35 35 H 1.08994 * 109.47310 * 59.99620 * 3 2 1 36 36 H 1.09008 * 109.46883 * 270.02186 * 7 6 5 37 37 H 1.08998 * 109.47566 * 30.02162 * 7 6 5 38 38 H 1.09000 * 109.46886 * 150.02704 * 7 6 5 39 39 H 1.07999 * 126.29056 * 180.02562 * 8 6 5 40 40 H 0.97000 * 119.99736 * 0.27108 * 12 10 9 41 41 H 1.09001 * 110.37365 * 37.76943 * 15 13 12 42 42 H 1.09002 * 110.36694 * 160.09861 * 15 13 12 43 43 H 0.96996 * 120.00084 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.88001 * 120.47622 * 25 16 15 45 45 H 1.08997 * 109.88913 * 241.64152 * 25 16 15 46 46 H 1.08998 * 109.47425 * 173.52285 * 27 26 25 47 47 H 1.08995 * 109.47310 * 293.52492 * 27 26 25 48 48 H 1.09008 * 109.47073 * 53.52209 * 27 26 25 49 49 H 1.09006 * 109.47290 * 306.47694 * 28 26 25 50 50 H 1.08995 * 109.47362 * 66.47895 * 28 26 25 51 51 H 1.09003 * 109.47263 * 186.47962 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7870 -0.3702 2.4658 6 7 2.4329 -1.2705 3.3205 7 6 2.4090 -1.2280 4.7847 8 6 3.0785 -2.1793 2.5725 9 6 2.8476 -1.8641 1.2486 10 6 3.3609 -2.5914 0.0733 11 8 3.0836 -2.2090 -1.0473 12 7 4.1422 -3.6767 0.2408 13 6 4.6574 -4.3958 -0.9270 14 1 4.9192 -3.7022 -1.7261 15 6 3.6393 -5.4535 -1.4213 16 7 3.8367 -6.6121 -0.5312 17 6 2.9050 -7.5783 -0.2604 18 1 3.1480 -8.3904 0.4089 19 6 1.6481 -7.5141 -0.8461 20 7 1.3518 -6.5242 -1.6614 21 14 0.3768 -8.8319 -0.4761 22 1 -0.4264 -8.4269 0.7055 23 1 -0.5181 -8.9995 -1.6492 24 1 1.0644 -10.1167 -0.1904 25 6 5.1994 -6.5579 0.0180 26 6 5.8690 -5.2854 -0.5425 27 6 6.7114 -5.6156 -1.7762 28 6 6.7214 -4.6049 0.5305 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.2396 -0.6203 5.1441 37 1 1.4680 -0.7921 5.1203 38 1 2.5019 -2.2399 5.1791 39 1 3.6693 -3.0057 2.9392 40 1 4.3635 -3.9817 1.1346 41 1 2.6220 -5.0732 -1.3288 42 1 3.8499 -5.7288 -2.4547 43 1 0.4734 -6.4792 -2.0704 44 1 5.1587 -6.5068 1.1061 45 1 5.7599 -7.4394 -0.2931 46 1 7.0803 -4.6919 -2.2221 47 1 7.5553 -6.2401 -1.4835 48 1 6.0985 -6.1500 -2.5022 49 1 6.1155 -4.4314 1.4199 50 1 7.5652 -5.2461 0.7850 51 1 7.0906 -3.6521 0.1510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977594248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:31 Heat of formation + Delta-G solvation = 34.532512 kcal Electronic energy + Delta-G solvation = -30658.349229 eV Core-core repulsion = 26786.944694 eV Total energy + Delta-G solvation = -3871.404535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.45536 -40.86828 -39.09276 -36.75204 -35.61078 -34.44669 -33.32976 -32.56960 -31.45233 -29.60733 -28.10116 -28.03242 -27.70678 -27.32228 -25.25994 -23.87061 -23.16148 -22.12780 -21.02051 -20.38571 -19.80777 -18.65558 -18.54697 -17.23337 -16.99592 -16.66653 -16.42168 -15.74134 -15.69101 -15.55928 -15.36585 -15.19145 -15.01003 -14.61395 -14.31932 -14.14646 -13.97002 -13.68127 -13.62448 -13.49416 -13.29809 -13.01052 -12.97436 -12.96403 -12.84155 -12.59243 -12.52372 -12.37383 -12.11823 -12.10700 -12.00282 -11.74433 -11.72552 -11.67250 -11.37573 -11.29454 -10.77468 -10.57229 -10.33093 -9.94260 -9.53911 -8.80280 -7.72016 -5.17269 0.56573 1.15005 1.44050 1.45912 1.49034 1.54882 2.37913 2.50233 2.60694 3.36170 3.37522 3.61688 3.67131 3.74331 3.96574 4.02423 4.10537 4.12637 4.26333 4.28900 4.43188 4.45894 4.46481 4.58439 4.61137 4.64785 4.71239 4.78091 4.83844 4.88113 4.92428 4.92947 4.96416 4.96733 5.08490 5.10852 5.15490 5.24894 5.30604 5.33551 5.37797 5.38671 5.51707 5.57584 5.60450 5.78940 5.90419 5.94883 6.36738 6.55758 6.80831 7.12598 7.48801 7.83316 8.47092 9.27907 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.004242 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.312392 B = 6599.707507 C = 7515.247650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.037 4.037 3 C -0.126 4.126 4 C 0.126 3.874 5 N -0.317 5.317 6 N -0.358 5.358 7 C 0.087 3.913 8 C 0.118 3.882 9 C -0.317 4.317 10 C 0.588 3.412 11 O -0.585 6.585 12 N -0.691 5.691 13 C 0.140 3.860 14 H 0.077 0.923 15 C 0.155 3.845 16 N -0.617 5.617 17 C -0.230 4.230 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.948 5.948 21 Si 0.974 3.026 22 H -0.288 1.288 23 H -0.301 1.301 24 H -0.266 1.266 25 C 0.139 3.861 26 C -0.074 4.074 27 C -0.126 4.126 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.219 0.781 40 H 0.404 0.596 41 H 0.068 0.932 42 H -0.018 1.018 43 H 0.241 0.759 44 H 0.038 0.962 45 H 0.024 0.976 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.031 0.969 49 H 0.061 0.939 50 H 0.078 0.922 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 12.030 13.551 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 C -0.184 4.184 4 C -0.041 4.041 5 N -0.138 5.138 6 N -0.135 5.135 7 C -0.052 4.052 8 C -0.035 4.035 9 C -0.332 4.332 10 C 0.377 3.623 11 O -0.467 6.467 12 N -0.341 5.341 13 C 0.034 3.966 14 H 0.095 0.905 15 C 0.029 3.971 16 N -0.343 5.343 17 C -0.359 4.359 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.598 5.598 21 Si 0.803 3.197 22 H -0.215 1.215 23 H -0.228 1.228 24 H -0.190 1.190 25 C 0.014 3.986 26 C -0.075 4.075 27 C -0.184 4.184 28 C -0.181 4.181 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.235 0.765 40 H 0.241 0.759 41 H 0.086 0.914 42 H -0.001 1.001 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.042 0.958 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.050 0.950 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.310 13.048 13.713 20.672 hybrid contribution -0.729 -1.806 -0.596 2.037 sum 7.580 11.242 13.117 18.865 Atomic orbital electron populations 1.21707 0.93444 1.00919 1.02867 1.19953 0.96472 0.96627 0.92705 1.21679 1.00541 0.93372 1.02800 1.22493 0.94292 0.93392 0.93875 1.77024 1.20951 1.15863 0.99987 1.48690 1.36216 1.20113 1.08494 1.22418 1.05654 1.06465 0.70651 1.23487 0.95480 0.94766 0.89795 1.20320 1.15094 1.04424 0.93362 1.17576 0.77177 0.79725 0.87779 1.90650 1.60057 1.69107 1.26862 1.45447 1.51011 1.27894 1.09708 1.22120 0.94071 0.92437 0.88013 0.90534 1.21933 0.99022 0.86262 0.89930 1.44679 1.10347 1.26628 1.52641 1.19429 0.92142 1.02282 1.22087 0.89706 1.25606 0.99925 1.00634 0.99942 1.70140 1.20697 1.33421 1.35509 0.85139 0.79019 0.79142 0.76423 1.21511 1.22763 1.19047 1.21644 0.84908 0.95676 0.96336 1.21825 0.93775 0.94023 0.97839 1.21688 0.98960 1.01917 0.95836 1.21687 0.99169 1.00544 0.96687 0.91809 0.90394 0.94958 0.89254 0.93368 0.90513 0.92000 0.88209 0.88694 0.86296 0.76482 0.75936 0.91432 1.00058 0.94946 0.94426 0.95769 0.91316 0.90132 0.94954 0.92004 0.90332 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.18 71.98 0.66 -3.15 16 2 C -0.04 -1.18 3.26 -11.54 -0.04 -1.22 16 3 C -0.13 -3.17 9.18 71.98 0.66 -2.51 16 4 C 0.13 4.18 5.77 43.51 0.25 4.43 16 5 N -0.32 -9.30 12.50 -46.68 -0.58 -9.88 16 6 N -0.36 -7.98 3.98 -367.79 -1.46 -9.44 16 7 C 0.09 0.92 11.44 127.77 1.46 2.38 16 8 C 0.12 2.79 10.99 84.28 0.93 3.72 16 9 C -0.32 -10.55 6.13 -20.15 -0.12 -10.67 16 10 C 0.59 23.22 7.81 86.67 0.68 23.90 16 11 O -0.59 -27.67 14.31 -4.04 -0.06 -27.72 16 12 N -0.69 -24.30 4.68 -439.22 -2.06 -26.36 16 13 C 0.14 5.47 2.56 46.38 0.12 5.59 16 14 H 0.08 3.13 7.63 -2.38 -0.02 3.11 16 15 C 0.15 8.04 5.27 86.85 0.46 8.49 16 16 N -0.62 -31.09 3.39 -692.00 -2.35 -33.43 16 17 C -0.23 -12.79 10.27 84.03 0.86 -11.92 16 18 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 20 N -0.95 -59.66 10.09 21.65 0.22 -59.44 16 21 Si 0.97 46.78 29.55 68.60 2.03 48.80 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.14 5.25 6.41 86.73 0.56 5.81 16 26 C -0.07 -2.27 0.81 -51.00 -0.04 -2.31 16 27 C -0.13 -3.59 8.41 71.98 0.61 -2.99 16 28 C -0.12 -2.62 8.07 71.98 0.58 -2.04 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 3.41 5.60 -2.39 -0.01 3.40 16 33 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.22 3.20 7.46 -2.91 -0.02 3.17 16 40 H 0.40 11.63 5.81 -92.71 -0.54 11.09 16 41 H 0.07 4.19 5.87 -2.39 -0.01 4.17 16 42 H -0.02 -1.06 7.80 -2.39 -0.02 -1.08 16 43 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.04 1.31 7.77 -2.38 -0.02 1.29 16 45 H 0.02 0.92 7.84 -2.39 -0.02 0.90 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 48 H 0.03 1.11 7.57 -2.38 -0.02 1.09 16 49 H 0.06 1.18 6.35 -2.38 -0.02 1.17 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -81.61 402.55 4.20 -77.41 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.38 Total: 26.08 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 8.08 Total: 13.99 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -6.23 Total: -138.56 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.72 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -81.61 4.20 -77.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977594248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.939 kcal (2) G-P(sol) polarization free energy of solvation -81.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds