Wall clock time and date at job start Tue Mar 31 2020 19:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.35357 * 126.38154 * 34.68997 * 4 2 1 6 6 C 1.41505 * 105.50166 * 179.89743 * 5 4 2 7 7 C 1.47705 * 126.52003 * 180.17302 * 6 5 4 8 8 O 1.21575 * 120.00326 * 0.25773 * 7 6 5 9 9 N 1.34775 * 120.00474 * 180.25687 * 7 6 5 10 10 C 1.46495 * 120.00654 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46630 * 35.00124 * 10 9 7 12 12 C 1.52997 * 109.47422 * 275.00486 * 10 9 7 13 13 C 1.52998 * 109.47457 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46940 * 59.99874 * 13 12 10 15 15 C 1.53001 * 109.46764 * 299.99958 * 14 13 12 16 16 H 1.09001 * 109.46558 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.47208 * 299.99808 * 15 14 13 18 18 C 1.36930 * 120.00520 * 275.00221 * 17 15 14 19 19 H 1.08005 * 119.99609 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00153 * 180.02562 * 18 17 15 21 21 N 1.31612 * 120.00043 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47476 * 89.99881 * 22 20 18 24 24 H 1.48500 * 109.46865 * 210.00222 * 22 20 18 25 25 H 1.48499 * 109.46895 * 329.99866 * 22 20 18 26 26 C 1.52998 * 109.47316 * 154.99832 * 10 9 7 27 27 N 1.31811 * 106.96244 * 0.36882 * 6 5 4 28 28 N 1.28470 * 110.07049 * 359.76772 * 27 6 5 29 29 C 1.46502 * 124.88120 * 179.97438 * 28 27 6 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 37 37 H 1.08003 * 127.25207 * 0.02562 * 5 4 2 38 38 H 0.97004 * 119.99406 * 0.02562 * 9 7 6 39 39 H 1.09002 * 109.46923 * 299.99459 * 12 10 9 40 40 H 1.08999 * 109.47728 * 59.99143 * 12 10 9 41 41 H 1.09001 * 109.47555 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.47245 * 299.99944 * 13 12 10 43 43 H 1.08998 * 109.47094 * 59.99978 * 14 13 12 44 44 H 1.08998 * 109.46714 * 180.02562 * 14 13 12 45 45 H 0.97003 * 119.99171 * 95.00489 * 17 15 14 46 46 H 0.97005 * 120.00364 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.47551 * 300.00509 * 26 10 9 48 48 H 1.09002 * 109.47033 * 60.00539 * 26 10 9 49 49 H 1.08992 * 109.47083 * 270.04059 * 29 28 27 50 50 H 1.08997 * 109.47033 * 30.04231 * 29 28 27 51 51 H 1.09004 * 109.46926 * 150.04116 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.4552 -0.7012 -2.4548 6 6 2.2882 -1.5020 -3.2717 7 6 2.0885 -1.8017 -4.7042 8 8 1.1322 -1.3382 -5.2947 9 7 2.9663 -2.5892 -5.3567 10 6 2.7680 -2.8870 -6.7773 11 1 2.3385 -2.0171 -7.2743 12 6 1.8176 -4.0774 -6.9211 13 6 1.6100 -4.3880 -8.4047 14 6 2.9559 -4.7293 -9.0475 15 6 3.9061 -3.5388 -8.9038 16 1 4.8648 -3.7819 -9.3621 17 7 3.3286 -2.3696 -9.5714 18 6 3.5144 -2.1875 -10.9157 19 1 4.0864 -2.9061 -11.4840 20 6 2.9676 -1.0793 -11.5481 21 7 2.2702 -0.2039 -10.8557 22 14 3.2205 -0.8313 -13.3823 23 1 2.1182 -1.4905 -14.1276 24 1 3.2260 0.6216 -13.6891 25 1 4.5185 -1.4279 -13.7881 26 6 4.1140 -3.2284 -7.4196 27 7 3.2739 -1.9330 -2.5101 28 7 3.1389 -1.4796 -1.3157 29 6 4.0535 -1.7578 -0.2056 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 0.5506 -0.1887 -2.7473 38 1 3.7291 -2.9594 -4.8854 39 1 2.2471 -4.9472 -6.4241 40 1 0.8587 -3.8342 -6.4634 41 1 0.9333 -5.2363 -8.5071 42 1 1.1803 -3.5181 -8.9014 43 1 3.3855 -5.5992 -8.5508 44 1 2.8079 -4.9502 -10.1046 45 1 2.8147 -1.7244 -9.0609 46 1 1.8884 0.5707 -11.2975 47 1 4.7910 -2.3804 -7.3172 48 1 4.5435 -4.0983 -6.9226 49 1 3.7247 -2.6540 0.3202 50 1 5.0599 -1.9131 -0.5943 51 1 4.0564 -0.9129 0.4832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981084795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:59 Heat of formation + Delta-G solvation = 32.828084 kcal Electronic energy + Delta-G solvation = -29239.218795 eV Core-core repulsion = 25367.740350 eV Total energy + Delta-G solvation = -3871.478445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.85734 -39.54096 -37.77414 -36.11771 -34.32750 -33.67279 -32.88772 -30.84980 -29.94591 -29.23179 -28.05361 -27.56343 -27.31391 -23.80740 -23.45339 -22.82962 -21.78184 -21.27128 -20.43972 -19.55235 -18.41316 -17.51873 -17.13347 -16.50381 -16.45329 -15.67432 -14.95339 -14.67535 -14.56316 -14.44468 -14.17838 -14.07516 -13.64408 -13.56051 -13.48646 -13.44423 -13.03431 -12.96890 -12.84866 -12.53355 -12.22326 -12.01492 -11.88785 -11.68106 -11.62165 -11.29391 -11.28185 -10.89631 -10.81045 -10.74310 -10.63794 -10.16854 -10.09685 -9.99585 -9.89987 -9.48796 -9.40087 -9.22054 -9.05876 -8.81210 -8.59181 -6.85114 -5.65577 -2.94595 1.56531 2.03197 2.25666 3.41394 3.50002 3.54628 3.56633 3.63003 4.07568 4.17596 4.44011 4.64328 4.67528 4.71333 4.76881 4.89224 4.99356 5.17046 5.24358 5.27337 5.33786 5.37677 5.43732 5.47422 5.60770 5.64684 5.69278 5.69733 5.81234 5.83083 5.84350 5.95781 5.97727 6.01151 6.19302 6.22337 6.30215 6.31771 6.49298 6.55044 6.58623 6.73073 6.82411 6.91543 6.95432 7.12196 7.20746 7.66223 7.79304 7.94165 8.51343 8.52401 9.63184 10.21700 10.56099 11.56616 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002449 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.059715 B =11428.737931 C =12127.178137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.014 3.986 5 C -0.173 4.173 6 C -0.007 4.007 7 C 0.599 3.401 8 O -0.525 6.525 9 N -0.712 5.712 10 C 0.146 3.854 11 H 0.100 0.900 12 C -0.120 4.120 13 C -0.109 4.109 14 C -0.135 4.135 15 C 0.179 3.821 16 H 0.051 0.949 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.283 1.283 26 C -0.127 4.127 27 N -0.264 5.264 28 N -0.284 5.284 29 C 0.086 3.914 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.161 0.839 38 H 0.400 0.600 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -3.788 27.876 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.110 4.110 5 C -0.200 4.200 6 C -0.168 4.168 7 C 0.382 3.618 8 O -0.398 6.398 9 N -0.362 5.362 10 C 0.042 3.958 11 H 0.118 0.882 12 C -0.159 4.159 13 C -0.147 4.147 14 C -0.175 4.175 15 C 0.069 3.931 16 H 0.069 0.931 17 N -0.364 5.364 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.166 4.166 27 N -0.100 5.100 28 N -0.072 5.072 29 C -0.055 4.055 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.178 0.822 38 H 0.234 0.766 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.220 0.780 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.208 -4.122 27.316 27.714 hybrid contribution -0.304 0.598 -0.544 0.864 sum 1.904 -3.523 26.773 27.071 Atomic orbital electron populations 1.21830 0.92964 1.02617 1.02736 1.19656 0.96867 0.95391 0.92348 1.21866 1.00990 0.94620 1.02844 1.21338 0.90977 1.00504 0.98205 1.21486 1.02931 1.04577 0.91049 1.22029 0.95624 1.03751 0.95366 1.16906 0.82812 0.78643 0.83423 1.90843 1.30082 1.52059 1.66850 1.46011 1.28009 1.50300 1.11862 1.21092 0.96532 0.99243 0.78912 0.88205 1.21848 0.99195 0.97117 0.97725 1.21359 0.97639 1.01686 0.94050 1.22178 0.96659 0.98343 1.00364 1.20168 0.95127 0.88475 0.89372 0.93142 1.42516 1.63075 1.24157 1.06657 1.19221 1.27401 1.05345 0.84953 0.91261 1.24733 1.00832 0.97661 0.97733 1.69669 1.39648 1.13795 1.34671 0.86239 0.77555 0.76880 0.85794 1.21848 1.21918 1.20902 1.22077 0.95754 1.01170 0.97607 1.73514 1.23889 1.21103 0.91476 1.45259 1.19392 1.34769 1.07770 1.22126 0.93771 1.03177 0.86412 0.91558 0.91788 0.92167 0.90316 0.91706 0.92768 0.91624 0.82170 0.76578 0.92813 0.92257 0.93328 0.90296 0.93908 0.92038 0.77989 0.93543 0.91403 0.92062 0.89840 0.88446 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.78 37.16 0.33 -0.56 16 2 C -0.02 -0.15 2.89 -91.77 -0.27 -0.41 16 3 C -0.15 -0.86 9.17 37.15 0.34 -0.52 16 4 C 0.01 0.14 5.84 -82.21 -0.48 -0.34 16 5 C -0.17 -2.26 9.95 -39.37 -0.39 -2.65 16 6 C -0.01 -0.11 7.13 -82.77 -0.59 -0.70 16 7 C 0.60 10.59 7.79 -12.39 -0.10 10.49 16 8 O -0.52 -11.22 16.59 5.30 0.09 -11.13 16 9 N -0.71 -11.33 5.07 -54.80 -0.28 -11.61 16 10 C 0.15 2.60 2.28 -67.94 -0.15 2.44 16 11 H 0.10 2.21 5.94 -51.93 -0.31 1.91 16 12 C -0.12 -2.03 5.49 -26.73 -0.15 -2.18 16 13 C -0.11 -1.99 5.77 -26.73 -0.15 -2.15 16 14 C -0.14 -2.46 5.61 -26.73 -0.15 -2.61 16 15 C 0.18 3.58 3.10 -67.90 -0.21 3.37 16 16 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 17 N -0.72 -18.20 4.28 -53.40 -0.23 -18.43 16 18 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 22 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.13 -2.15 5.08 -26.71 -0.14 -2.29 16 27 N -0.26 -3.45 11.67 33.42 0.39 -3.06 16 28 N -0.28 -2.84 3.70 -63.85 -0.24 -3.08 16 29 C 0.09 0.43 10.89 59.85 0.65 1.08 16 30 H 0.07 0.46 7.35 -51.93 -0.38 0.08 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.36 7.42 -51.93 -0.39 -0.02 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.16 2.03 7.46 -52.48 -0.39 1.64 16 38 H 0.40 5.43 8.33 -40.82 -0.34 5.09 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.73 7.60 -51.93 -0.39 1.33 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.38 10.52 6.06 -40.82 -0.25 10.27 16 46 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.09 0.25 7.44 -51.93 -0.39 -0.14 16 LS Contribution 406.27 15.07 6.12 6.12 Total: -1.00 -34.84 406.27 -8.86 -43.71 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.72 Total: 12.13 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.70 Total: -4.33 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 0.37 Total: -64.36 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.84 -8.86 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981084795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.533 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds