Wall clock time and date at job start Tue Mar 31 2020 19:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.35357 * 126.38154 * 34.68997 * 4 2 1 6 6 C 1.41505 * 105.50166 * 179.89743 * 5 4 2 7 7 C 1.47705 * 126.52003 * 180.17302 * 6 5 4 8 8 O 1.21575 * 120.00326 * 0.25773 * 7 6 5 9 9 N 1.34775 * 120.00474 * 180.25687 * 7 6 5 10 10 C 1.46495 * 120.00654 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46630 * 35.00124 * 10 9 7 12 12 C 1.52997 * 109.47422 * 275.00486 * 10 9 7 13 13 C 1.52998 * 109.47457 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46940 * 59.99874 * 13 12 10 15 15 C 1.53001 * 109.46764 * 299.99958 * 14 13 12 16 16 H 1.09001 * 109.46558 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.47208 * 299.99808 * 15 14 13 18 18 C 1.36930 * 120.00520 * 275.00221 * 17 15 14 19 19 H 1.08005 * 119.99609 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00153 * 180.02562 * 18 17 15 21 21 N 1.31612 * 120.00043 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47476 * 89.99881 * 22 20 18 24 24 H 1.48500 * 109.46865 * 210.00222 * 22 20 18 25 25 H 1.48499 * 109.46895 * 329.99866 * 22 20 18 26 26 C 1.52998 * 109.47316 * 154.99832 * 10 9 7 27 27 N 1.31811 * 106.96244 * 0.36882 * 6 5 4 28 28 N 1.28470 * 110.07049 * 359.76772 * 27 6 5 29 29 C 1.46502 * 124.88120 * 179.97438 * 28 27 6 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 37 37 H 1.08003 * 127.25207 * 0.02562 * 5 4 2 38 38 H 0.97004 * 119.99406 * 0.02562 * 9 7 6 39 39 H 1.09002 * 109.46923 * 299.99459 * 12 10 9 40 40 H 1.08999 * 109.47728 * 59.99143 * 12 10 9 41 41 H 1.09001 * 109.47555 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.47245 * 299.99944 * 13 12 10 43 43 H 1.08998 * 109.47094 * 59.99978 * 14 13 12 44 44 H 1.08998 * 109.46714 * 180.02562 * 14 13 12 45 45 H 0.97003 * 119.99171 * 95.00489 * 17 15 14 46 46 H 0.97005 * 120.00364 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.47551 * 300.00509 * 26 10 9 48 48 H 1.09002 * 109.47033 * 60.00539 * 26 10 9 49 49 H 1.08992 * 109.47083 * 270.04059 * 29 28 27 50 50 H 1.08997 * 109.47033 * 30.04231 * 29 28 27 51 51 H 1.09004 * 109.46926 * 150.04116 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.4552 -0.7012 -2.4548 6 6 2.2882 -1.5020 -3.2717 7 6 2.0885 -1.8017 -4.7042 8 8 1.1322 -1.3382 -5.2947 9 7 2.9663 -2.5892 -5.3567 10 6 2.7680 -2.8870 -6.7773 11 1 2.3385 -2.0171 -7.2743 12 6 1.8176 -4.0774 -6.9211 13 6 1.6100 -4.3880 -8.4047 14 6 2.9559 -4.7293 -9.0475 15 6 3.9061 -3.5388 -8.9038 16 1 4.8648 -3.7819 -9.3621 17 7 3.3286 -2.3696 -9.5714 18 6 3.5144 -2.1875 -10.9157 19 1 4.0864 -2.9061 -11.4840 20 6 2.9676 -1.0793 -11.5481 21 7 2.2702 -0.2039 -10.8557 22 14 3.2205 -0.8313 -13.3823 23 1 2.1182 -1.4905 -14.1276 24 1 3.2260 0.6216 -13.6891 25 1 4.5185 -1.4279 -13.7881 26 6 4.1140 -3.2284 -7.4196 27 7 3.2739 -1.9330 -2.5101 28 7 3.1389 -1.4796 -1.3157 29 6 4.0535 -1.7578 -0.2056 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 0.5506 -0.1887 -2.7473 38 1 3.7291 -2.9594 -4.8854 39 1 2.2471 -4.9472 -6.4241 40 1 0.8587 -3.8342 -6.4634 41 1 0.9333 -5.2363 -8.5071 42 1 1.1803 -3.5181 -8.9014 43 1 3.3855 -5.5992 -8.5508 44 1 2.8079 -4.9502 -10.1046 45 1 2.8147 -1.7244 -9.0609 46 1 1.8884 0.5707 -11.2975 47 1 4.7910 -2.3804 -7.3172 48 1 4.5435 -4.0983 -6.9226 49 1 3.7247 -2.6540 0.3202 50 1 5.0599 -1.9131 -0.5943 51 1 4.0564 -0.9129 0.4832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981084795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:57 Heat of formation + Delta-G solvation = 9.130271 kcal Electronic energy + Delta-G solvation = -29240.246409 eV Core-core repulsion = 25367.740350 eV Total energy + Delta-G solvation = -3872.506059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.75662 -40.97860 -39.30606 -36.71876 -36.01916 -34.78407 -34.36092 -32.69836 -30.99815 -30.47059 -29.73536 -28.17268 -28.03269 -25.69383 -24.72583 -23.59643 -23.30538 -22.62134 -21.49782 -20.68748 -19.83586 -19.22074 -18.39589 -17.52859 -17.31998 -17.14848 -16.53052 -16.05791 -15.81391 -15.49260 -15.35929 -15.27349 -15.18475 -14.91669 -14.72920 -14.57202 -13.93540 -13.81609 -13.52726 -13.42751 -13.41669 -13.40167 -13.01211 -12.87548 -12.82450 -12.60751 -12.59147 -12.19582 -12.13831 -12.11756 -11.80461 -11.80143 -11.77719 -11.62257 -11.53484 -11.24579 -10.95491 -10.82071 -10.24016 -9.95079 -9.92824 -8.94730 -7.88750 -5.16975 0.49522 1.08460 1.46256 1.48722 1.53875 1.56802 2.14850 2.34793 2.58846 3.26989 3.44104 3.50171 3.73733 3.83747 3.91854 4.04227 4.12603 4.18305 4.18845 4.35670 4.37241 4.40649 4.44848 4.46087 4.55010 4.61164 4.65880 4.69373 4.71737 4.75951 4.80757 4.81941 4.97588 5.00287 5.02212 5.09611 5.14161 5.18491 5.28853 5.32077 5.37336 5.42754 5.42955 5.44951 5.53884 5.62923 5.67746 5.84660 6.32526 6.46244 6.89241 7.19586 7.37756 8.17040 8.38194 9.34919 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002449 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.059715 B =11428.737931 C =12127.178137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 C -0.144 4.144 4 C 0.032 3.968 5 C -0.202 4.202 6 C -0.041 4.041 7 C 0.594 3.406 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.152 3.848 11 H 0.046 0.954 12 C -0.109 4.109 13 C -0.105 4.105 14 C -0.126 4.126 15 C 0.168 3.832 16 H 0.056 0.944 17 N -0.735 5.735 18 C -0.231 4.231 19 H 0.080 0.920 20 C -0.083 4.083 21 N -0.974 5.974 22 Si 0.971 3.029 23 H -0.290 1.290 24 H -0.300 1.300 25 H -0.266 1.266 26 C -0.114 4.114 27 N -0.267 5.267 28 N -0.273 5.273 29 C 0.070 3.930 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.150 0.850 38 H 0.415 0.585 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.029 0.971 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.370 0.630 46 H 0.247 0.753 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.105 0.895 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -5.900 30.935 31.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.202 4.202 4 C -0.093 4.093 5 C -0.230 4.230 6 C -0.199 4.199 7 C 0.380 3.620 8 O -0.454 6.454 9 N -0.348 5.348 10 C 0.048 3.952 11 H 0.064 0.936 12 C -0.148 4.148 13 C -0.143 4.143 14 C -0.166 4.166 15 C 0.060 3.940 16 H 0.074 0.926 17 N -0.376 5.376 18 C -0.363 4.363 19 H 0.097 0.903 20 C -0.275 4.275 21 N -0.625 5.625 22 Si 0.801 3.199 23 H -0.218 1.218 24 H -0.227 1.227 25 H -0.191 1.191 26 C -0.153 4.153 27 N -0.104 5.104 28 N -0.061 5.061 29 C -0.068 4.068 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.168 0.832 38 H 0.252 0.748 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.202 0.798 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.123 0.877 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.428 -6.314 30.401 31.364 hybrid contribution -0.913 1.203 -1.320 2.006 sum 3.515 -5.111 29.081 29.735 Atomic orbital electron populations 1.21848 0.92972 1.02370 1.03074 1.19846 0.96825 0.95594 0.91585 1.21865 1.01258 0.94081 1.02979 1.21786 0.90060 0.99159 0.98279 1.21579 1.03360 1.05553 0.92515 1.21668 0.97650 1.06218 0.94346 1.17341 0.82111 0.77926 0.84619 1.90805 1.32247 1.54038 1.68338 1.45807 1.28133 1.49861 1.11000 1.20831 0.97169 0.97630 0.79596 0.93572 1.21749 0.98392 0.97776 0.96873 1.21288 0.98164 1.00398 0.94485 1.22057 0.95934 0.98750 0.99813 1.20500 0.95323 0.87340 0.90865 0.92570 1.42759 1.63158 1.25621 1.06027 1.19669 1.25591 1.04679 0.86324 0.90253 1.25570 1.01724 0.98038 1.02151 1.69867 1.41808 1.14519 1.36339 0.85162 0.77994 0.76156 0.80618 1.21762 1.22733 1.19069 1.21962 0.94880 1.02699 0.95749 1.73430 1.23086 1.21284 0.92597 1.45802 1.19552 1.33076 1.07703 1.22669 0.93194 1.05600 0.85314 0.93206 0.89519 0.92729 0.87039 0.89437 0.92316 0.93693 0.83239 0.74827 0.89198 0.93958 0.91153 0.95202 0.89571 0.93787 0.79755 0.94419 0.92378 0.87470 0.87623 0.87673 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.78 71.98 0.63 -0.95 16 2 C -0.02 -0.19 2.89 -11.54 -0.03 -0.22 16 3 C -0.14 -1.37 9.17 71.98 0.66 -0.71 16 4 C 0.03 0.61 5.84 41.40 0.24 0.85 16 5 C -0.20 -5.52 9.95 22.41 0.22 -5.30 16 6 C -0.04 -1.27 7.13 42.46 0.30 -0.97 16 7 C 0.59 22.31 7.79 86.75 0.68 22.99 16 8 O -0.58 -26.99 16.59 -3.95 -0.07 -27.05 16 9 N -0.70 -22.59 5.07 -445.55 -2.26 -24.85 16 10 C 0.15 5.55 2.28 44.99 0.10 5.65 16 11 H 0.05 2.22 5.94 -2.39 -0.01 2.21 16 12 C -0.11 -3.66 5.49 30.59 0.17 -3.49 16 13 C -0.11 -3.83 5.77 30.60 0.18 -3.66 16 14 C -0.13 -4.36 5.61 30.60 0.17 -4.18 16 15 C 0.17 6.60 3.10 45.01 0.14 6.74 16 16 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 17 N -0.73 -38.31 4.28 -322.86 -1.38 -39.69 16 18 C -0.23 -13.16 9.93 84.03 0.83 -12.32 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 21 N -0.97 -63.68 13.06 21.65 0.28 -63.40 16 22 Si 0.97 48.30 29.55 68.60 2.03 50.33 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 C -0.11 -3.73 5.08 30.61 0.16 -3.58 16 27 N -0.27 -6.70 11.67 -48.18 -0.56 -7.26 16 28 N -0.27 -4.86 3.70 -355.93 -1.32 -6.17 16 29 C 0.07 0.42 10.89 127.77 1.39 1.81 16 30 H 0.05 0.71 7.35 -2.39 -0.02 0.69 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.11 0.49 7.42 -2.39 -0.02 0.47 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.45 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.15 4.23 7.46 -2.91 -0.02 4.21 16 38 H 0.41 10.83 8.33 -92.71 -0.77 10.06 16 39 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.03 1.37 7.60 -2.39 -0.02 1.35 16 43 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 45 H 0.37 21.54 6.06 -92.71 -0.56 20.98 16 46 H 0.25 15.77 8.31 -92.70 -0.77 15.00 16 47 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.12 0.04 7.44 -2.39 -0.02 0.02 16 Total: -1.00 -82.75 406.27 2.63 -80.12 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -0.41 Total: 39.84 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 6.31 Total: -1.87 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -5.24 Total: -141.37 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.07 Total: -27.05 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal Total: -82.75 2.63 -80.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981084795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.250 kcal (2) G-P(sol) polarization free energy of solvation -82.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds