Wall clock time and date at job start Tue Mar 31 2020 19:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46928 * 2 1 4 4 C 1.50703 * 109.47087 * 120.00359 * 2 1 3 5 5 C 1.35358 * 126.38328 * 324.96998 * 4 2 1 6 6 C 1.41506 * 105.50173 * 180.02562 * 5 4 2 7 7 C 1.47711 * 126.51875 * 180.02562 * 6 5 4 8 8 O 1.21573 * 120.00075 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.72952 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27919 * 9 7 6 11 11 H 1.09007 * 109.46737 * 324.99949 * 10 9 7 12 12 C 1.52998 * 109.47145 * 84.99285 * 10 9 7 13 13 C 1.53009 * 109.47096 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46897 * 300.00522 * 13 12 10 15 15 C 1.52998 * 109.47159 * 59.99962 * 14 13 12 16 16 H 1.08999 * 109.47409 * 59.99602 * 15 14 13 17 17 N 1.46506 * 109.46896 * 179.97438 * 15 14 13 18 18 C 1.36930 * 119.99979 * 274.99681 * 17 15 14 19 19 H 1.08003 * 120.00100 * 0.02562 * 18 17 15 20 20 C 1.38815 * 120.00133 * 179.97438 * 18 17 15 21 21 N 1.31626 * 119.99503 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00149 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47379 * 60.00314 * 22 20 18 24 24 H 1.48503 * 109.46994 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47311 * 299.99956 * 22 20 18 26 26 C 1.52995 * 109.47290 * 204.99666 * 10 9 7 27 27 N 1.31804 * 106.95999 * 0.26727 * 6 5 4 28 28 N 1.28463 * 110.07805 * 359.55441 * 27 6 5 29 29 C 1.46502 * 124.88671 * 180.18246 * 28 27 6 30 30 H 1.08997 * 109.46571 * 299.99472 * 1 2 3 31 31 H 1.09000 * 109.47110 * 59.99937 * 1 2 3 32 32 H 1.08996 * 109.46529 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47088 * 240.00020 * 2 1 3 34 34 H 1.08997 * 109.47063 * 60.00829 * 3 2 1 35 35 H 1.09004 * 109.46801 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47276 * 299.99961 * 3 2 1 37 37 H 1.08003 * 127.25392 * 0.02819 * 5 4 2 38 38 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 39 39 H 1.09001 * 109.47335 * 300.00029 * 12 10 9 40 40 H 1.08999 * 109.47045 * 60.00647 * 12 10 9 41 41 H 1.08991 * 109.46964 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.46735 * 60.00348 * 13 12 10 43 43 H 1.08998 * 109.46904 * 299.99869 * 14 13 12 44 44 H 1.08998 * 109.46633 * 180.02562 * 14 13 12 45 45 H 0.96995 * 119.99672 * 94.99589 * 17 15 14 46 46 H 0.97000 * 119.99384 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.47294 * 299.99595 * 26 10 9 48 48 H 1.09002 * 109.46851 * 59.99863 * 26 10 9 49 49 H 1.08998 * 109.47121 * 270.31166 * 29 28 27 50 50 H 1.08995 * 109.47187 * 30.32104 * 29 28 27 51 51 H 1.09010 * 109.46671 * 150.31537 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.4588 -0.6961 2.4564 6 6 2.2892 -1.5008 3.2720 7 6 2.0894 -1.8007 4.7045 8 8 1.1327 -1.3379 5.2948 9 7 2.9645 -2.5924 5.3556 10 6 2.7631 -2.8949 6.7748 11 1 2.3346 -2.0259 7.2742 12 6 1.8099 -4.0837 6.9126 13 6 1.5990 -4.3992 8.3949 14 6 2.9431 -4.7457 9.0387 15 6 3.8961 -3.5568 8.9009 16 1 3.4675 -2.6877 9.3999 17 7 5.1829 -3.8884 9.5179 18 6 5.3635 -3.7089 10.8634 19 1 4.5572 -3.3232 11.4697 20 6 6.5825 -4.0236 11.4481 21 7 7.5649 -4.4941 10.7092 22 14 6.8286 -3.7794 13.2836 23 1 5.8483 -4.6090 14.0293 24 1 8.2072 -4.1863 13.6566 25 1 6.6263 -2.3481 13.6241 26 6 4.1072 -3.2417 7.4181 27 7 3.2777 -1.9275 2.5117 28 7 3.1391 -1.4796 1.3156 29 6 4.0536 -1.7579 0.2054 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 0.5571 -0.1793 2.7502 38 1 3.7276 -2.9620 4.8845 39 1 0.8522 -3.8367 6.4543 40 1 2.2383 -4.9527 6.4132 41 1 0.9203 -5.2464 8.4930 42 1 1.1704 -3.5301 8.8939 43 1 3.3717 -5.6148 8.5396 44 1 2.7927 -4.9709 10.0945 45 1 5.9068 -4.2352 8.9734 46 1 8.4168 -4.7136 11.1178 47 1 4.5356 -4.1107 6.9187 48 1 4.7862 -2.3947 7.3199 49 1 4.8361 -0.9996 0.1805 50 1 4.5042 -2.7407 0.3435 51 1 3.5006 -1.7405 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981084796.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:04 Heat of formation + Delta-G solvation = 5.792407 kcal Electronic energy + Delta-G solvation = -28679.557093 eV Core-core repulsion = 24806.906294 eV Total energy + Delta-G solvation = -3872.650800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.75270 -40.94007 -39.20563 -36.71002 -36.24625 -34.88070 -34.37514 -32.93195 -31.02526 -30.47961 -29.50479 -28.17677 -28.01696 -25.72185 -24.69936 -23.60953 -23.19047 -22.30139 -21.45581 -21.01172 -20.27486 -19.14294 -18.38996 -17.49950 -17.36084 -17.29899 -16.43676 -16.05546 -15.82473 -15.51341 -15.39140 -15.13452 -15.04438 -14.94999 -14.71572 -14.61097 -14.19941 -13.97214 -13.67542 -13.48412 -13.41128 -13.40137 -12.99346 -12.90555 -12.78969 -12.59685 -12.29354 -12.19369 -12.10854 -12.05950 -11.97465 -11.76851 -11.76196 -11.65441 -11.60659 -11.40116 -11.05037 -10.86074 -10.26368 -9.96791 -9.93385 -8.99879 -7.93126 -5.21223 0.49849 1.10061 1.47174 1.50091 1.53693 1.55992 2.11683 2.34413 2.57287 3.28887 3.39752 3.50405 3.61689 3.83565 3.85892 4.01740 4.04990 4.18630 4.25578 4.30215 4.32576 4.38840 4.43902 4.48745 4.51537 4.56518 4.61024 4.66103 4.68257 4.73045 4.75341 4.83341 4.98540 5.01617 5.01838 5.09963 5.15653 5.16220 5.21485 5.31054 5.34917 5.38119 5.43344 5.44888 5.50128 5.53020 5.65470 5.84547 6.29125 6.42923 6.88766 7.14406 7.35224 8.10736 8.35006 9.30128 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.002073 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.565121 B =13504.480608 C =14116.795605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.143 4.143 4 C 0.030 3.970 5 C -0.197 4.197 6 C -0.043 4.043 7 C 0.602 3.398 8 O -0.570 6.570 9 N -0.702 5.702 10 C 0.158 3.842 11 H 0.073 0.927 12 C -0.116 4.116 13 C -0.105 4.105 14 C -0.126 4.126 15 C 0.178 3.822 16 H 0.038 0.962 17 N -0.736 5.736 18 C -0.237 4.237 19 H 0.073 0.927 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.971 3.029 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.280 1.280 26 C -0.114 4.114 27 N -0.274 5.274 28 N -0.275 5.275 29 C 0.070 3.930 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.412 0.588 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.100 0.900 50 H 0.103 0.897 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 7.555 -30.122 33.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.095 4.095 5 C -0.225 4.225 6 C -0.201 4.201 7 C 0.388 3.612 8 O -0.448 6.448 9 N -0.352 5.352 10 C 0.053 3.947 11 H 0.091 0.909 12 C -0.155 4.155 13 C -0.143 4.143 14 C -0.166 4.166 15 C 0.069 3.931 16 H 0.057 0.943 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.091 0.909 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.800 3.200 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.206 1.206 26 C -0.153 4.153 27 N -0.111 5.111 28 N -0.063 5.063 29 C -0.068 4.068 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.175 0.825 38 H 0.248 0.752 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.592 7.244 -29.574 32.949 hybrid contribution 0.503 0.120 1.105 1.220 sum -12.089 7.363 -28.469 31.794 Atomic orbital electron populations 1.21846 0.92747 1.02397 1.03195 1.19854 0.96965 0.95599 0.91560 1.21848 1.01103 0.94057 1.03052 1.21828 0.90082 0.99056 0.98497 1.21581 1.03489 1.05270 0.92140 1.21755 0.97405 1.06213 0.94716 1.17174 0.81934 0.77736 0.84365 1.90751 1.31632 1.54235 1.68136 1.45889 1.28388 1.49653 1.11298 1.20850 0.95624 0.98262 0.79933 0.90873 1.21816 0.98942 0.97477 0.97218 1.21412 0.96684 1.01835 0.94412 1.22093 0.95594 0.99130 0.99808 1.20311 0.86248 0.95298 0.91232 0.94345 1.42570 1.11418 1.77819 1.05722 1.19564 0.97039 1.34392 0.85931 0.90869 1.25537 0.96323 1.02946 1.02139 1.69811 1.03982 1.52168 1.36051 0.85243 0.76366 0.77908 0.80453 1.20433 1.22164 1.20594 1.21879 0.95851 1.01755 0.95808 1.73474 1.23278 1.21704 0.92679 1.45777 1.19559 1.33391 1.07562 1.22640 0.93229 1.05262 0.85655 0.92782 0.89686 0.92744 0.87446 0.93323 0.92647 0.89577 0.82546 0.75180 0.91939 0.91005 0.90351 0.92060 0.92871 0.93694 0.79506 0.94098 0.90865 0.92307 0.88154 0.87864 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.78 71.98 0.63 -0.54 16 2 C -0.02 -0.16 3.10 -11.54 -0.04 -0.20 16 3 C -0.14 -1.06 9.18 71.98 0.66 -0.40 16 4 C 0.03 0.50 5.84 41.40 0.24 0.74 16 5 C -0.20 -4.56 9.96 22.41 0.22 -4.33 16 6 C -0.04 -1.17 7.13 42.46 0.30 -0.87 16 7 C 0.60 19.05 7.79 86.75 0.68 19.73 16 8 O -0.57 -21.34 16.59 -3.95 -0.07 -21.40 16 9 N -0.70 -20.16 5.07 -445.53 -2.26 -22.42 16 10 C 0.16 4.86 2.45 44.99 0.11 4.97 16 11 H 0.07 2.52 7.58 -2.38 -0.02 2.50 16 12 C -0.12 -3.26 5.49 30.60 0.17 -3.10 16 13 C -0.10 -3.03 5.92 30.60 0.18 -2.85 16 14 C -0.13 -4.55 5.50 30.60 0.17 -4.39 16 15 C 0.18 7.23 2.77 45.01 0.12 7.36 16 16 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 17 N -0.74 -37.77 5.12 -322.85 -1.65 -39.42 16 18 C -0.24 -13.44 9.93 84.04 0.83 -12.60 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 22 Si 0.97 47.06 29.55 68.60 2.03 49.08 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 26 C -0.11 -3.88 4.86 30.61 0.15 -3.73 16 27 N -0.27 -6.51 11.67 -48.17 -0.56 -7.07 16 28 N -0.27 -4.57 3.70 -355.92 -1.32 -5.88 16 29 C 0.07 0.43 11.11 127.77 1.42 1.85 16 30 H 0.05 0.57 7.35 -2.39 -0.02 0.55 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.11 0.33 6.86 -2.39 -0.02 0.31 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.16 3.55 7.47 -2.91 -0.02 3.53 16 38 H 0.41 10.60 8.33 -92.71 -0.77 9.82 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.37 20.39 7.80 -92.71 -0.72 19.67 16 46 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 47 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 51 H 0.13 -0.04 6.88 -2.38 -0.02 -0.06 16 Total: -1.00 -75.21 410.01 2.21 -73.00 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -0.57 Total: 36.26 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 6.32 Total: -2.42 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -5.51 Total: -134.52 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.07 Total: -21.40 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -75.21 2.21 -73.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981084796.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.795 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds