Wall clock time and date at job start Tue Mar 31 2020 20:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46770 * 2 1 4 4 C 1.53001 * 109.46828 * 240.00368 * 2 1 3 5 5 C 1.50696 * 109.47141 * 120.00139 * 2 1 3 6 6 C 1.39668 * 126.07247 * 74.99758 * 5 2 1 7 7 C 1.38403 * 105.36326 * 180.02562 * 6 5 2 8 8 C 1.47158 * 126.88599 * 180.02562 * 7 6 5 9 9 O 1.21637 * 120.00108 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00072 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99703 * 179.97438 * 10 8 7 12 12 H 1.08991 * 109.47166 * 35.00585 * 11 10 8 13 13 C 1.52998 * 109.47340 * 275.00144 * 11 10 8 14 14 C 1.52996 * 109.47273 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46903 * 60.00109 * 14 13 11 16 16 C 1.52998 * 109.47067 * 300.00017 * 15 14 13 17 17 H 1.08995 * 109.47085 * 299.99751 * 16 15 14 18 18 N 1.46501 * 109.46839 * 180.02562 * 16 15 14 19 19 C 1.36935 * 120.00270 * 85.00059 * 18 16 15 20 20 H 1.08003 * 119.99948 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00328 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99939 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47146 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47046 * 120.00601 * 23 21 19 26 26 H 1.48503 * 109.46785 * 240.00284 * 23 21 19 27 27 C 1.52996 * 109.47273 * 60.00209 * 16 15 14 28 28 N 1.36604 * 106.22894 * 0.02562 * 7 6 5 29 29 H 0.96995 * 125.18769 * 180.02562 * 28 7 6 30 30 N 1.28443 * 109.61888 * 359.97438 * 28 7 6 31 31 H 1.09002 * 109.47458 * 299.99996 * 1 2 3 32 32 H 1.09007 * 109.47465 * 59.99762 * 1 2 3 33 33 H 1.08998 * 109.47130 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46641 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47146 * 299.99705 * 3 2 1 36 36 H 1.08994 * 109.46951 * 60.00425 * 3 2 1 37 37 H 1.09001 * 109.46823 * 299.99232 * 4 2 1 38 38 H 1.08993 * 109.47503 * 60.00177 * 4 2 1 39 39 H 1.09005 * 109.46457 * 180.02562 * 4 2 1 40 40 H 1.07998 * 127.31647 * 0.02562 * 6 5 2 41 41 H 0.96994 * 120.00066 * 0.02562 * 10 8 7 42 42 H 1.09000 * 109.47505 * 300.00895 * 13 11 10 43 43 H 1.09005 * 109.46751 * 60.00512 * 13 11 10 44 44 H 1.08995 * 109.47154 * 179.97438 * 14 13 11 45 45 H 1.09007 * 109.47162 * 300.00375 * 14 13 11 46 46 H 1.08996 * 109.46860 * 60.00617 * 15 14 13 47 47 H 1.09002 * 109.46776 * 180.02562 * 15 14 13 48 48 H 0.97001 * 120.00045 * 265.00382 * 18 16 15 49 49 H 0.96992 * 120.00026 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.47590 * 179.97438 * 27 16 15 51 51 H 1.09007 * 109.47162 * 59.99625 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 2.0309 -2.0911 1.4410 7 6 2.5814 -2.2709 2.6981 8 6 2.8033 -3.5503 3.3904 9 8 2.4909 -4.5954 2.8521 10 7 3.3537 -3.5642 4.6206 11 6 3.5741 -4.8380 5.3101 12 1 3.8418 -5.6036 4.5820 13 6 2.2938 -5.2520 6.0383 14 6 2.5242 -6.5819 6.7588 15 6 3.6589 -6.4227 7.7727 16 6 4.9392 -6.0086 7.0446 17 1 5.2071 -6.7745 6.3168 18 7 6.0257 -5.8568 8.0154 19 6 6.7555 -6.9488 8.4028 20 1 6.5297 -7.9222 7.9929 21 6 7.7853 -6.8048 9.3223 22 7 8.0601 -5.6187 9.8223 23 14 8.7803 -8.2947 9.8512 24 1 8.2755 -9.5018 9.1488 25 1 10.2092 -8.0834 9.5067 26 1 8.6475 -8.4832 11.3182 27 6 4.7088 -4.6788 6.3241 28 7 2.8774 -1.0226 3.1673 29 1 3.2771 -0.8299 4.0298 30 7 2.5464 -0.1430 2.2917 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7215 -1.2490 40 1 1.6758 -2.8560 0.7662 41 1 3.6032 -2.7309 5.0498 42 1 2.0260 -4.4863 6.7663 43 1 1.4854 -5.3651 5.3159 44 1 1.6122 -6.8766 7.2779 45 1 2.7922 -7.3479 6.0309 46 1 3.3908 -5.6569 8.5006 47 1 3.8233 -7.3703 8.2857 48 1 6.2282 -4.9826 8.3839 49 1 8.7795 -5.5181 10.4650 50 1 5.6210 -4.3835 5.8056 51 1 4.4408 -3.9128 7.0519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981191865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:03 Heat of formation + Delta-G solvation = 16.632463 kcal Electronic energy + Delta-G solvation = -28621.505781 eV Core-core repulsion = 24749.325041 eV Total energy + Delta-G solvation = -3872.180740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.88277 -39.92946 -37.98425 -37.24038 -34.84631 -33.48417 -31.34325 -31.26832 -31.10727 -29.26765 -27.86304 -27.55554 -27.50481 -24.13094 -23.62685 -23.01067 -21.99268 -21.19777 -20.63346 -19.91988 -18.96447 -18.69647 -17.10619 -16.35580 -16.06167 -16.02410 -15.35998 -14.91717 -14.73560 -14.44758 -14.29826 -14.15376 -13.91942 -13.84695 -13.69570 -13.56161 -13.20082 -12.76489 -12.60294 -12.45715 -12.23442 -12.15026 -11.95236 -11.66399 -11.40654 -11.31792 -11.06073 -11.03265 -10.93050 -10.84400 -10.79478 -10.43479 -10.42131 -10.26558 -10.15742 -9.81127 -9.68259 -9.45999 -9.39916 -9.12038 -8.92010 -7.00981 -5.81281 -3.10085 1.01308 2.27500 2.48996 2.84278 3.03374 3.40542 3.46787 3.48589 4.05289 4.37329 4.48175 4.53663 4.68835 4.82392 4.89262 4.97572 5.00886 5.20800 5.24576 5.32355 5.34653 5.42604 5.44466 5.49619 5.52588 5.60096 5.60730 5.61266 5.65356 5.74938 5.79281 5.83052 5.89228 5.94390 6.00400 6.04303 6.06809 6.17048 6.19962 6.24115 6.39619 6.45956 6.53188 6.64370 6.66256 6.90545 7.06370 7.24079 7.67552 7.69895 7.92446 8.37359 9.48747 10.05264 10.39872 11.41463 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.001988 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.411105 B =14081.836961 C =14648.975742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.038 3.962 6 C -0.148 4.148 7 C -0.034 4.034 8 C 0.589 3.411 9 O -0.520 6.520 10 N -0.720 5.720 11 C 0.150 3.850 12 H 0.092 0.908 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.184 3.816 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.072 0.928 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.130 4.130 28 N -0.379 5.379 29 H 0.444 0.556 30 N -0.264 5.264 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.163 0.837 41 H 0.394 0.606 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 12.816 -18.456 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.120 4.120 6 C -0.177 4.177 7 C -0.163 4.163 8 C 0.374 3.626 9 O -0.394 6.394 10 N -0.370 5.370 11 C 0.046 3.954 12 H 0.110 0.890 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.178 4.178 16 C 0.073 3.927 17 H 0.067 0.933 18 N -0.364 5.364 19 C -0.368 4.368 20 H 0.090 0.910 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.169 4.169 28 N -0.095 5.095 29 H 0.289 0.711 30 N -0.097 5.097 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.180 0.820 41 H 0.227 0.773 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.674 12.854 -18.354 27.346 hybrid contribution 0.854 -0.734 1.074 1.557 sum -14.820 12.120 -17.280 25.790 Atomic orbital electron populations 1.21875 0.93280 1.02368 1.02071 1.18916 0.95419 0.94847 0.89346 1.21773 1.01337 0.94243 1.01909 1.21890 1.01461 1.00522 0.95901 1.21912 1.03011 0.91617 0.95481 1.21983 1.03941 0.96509 0.95302 1.21827 1.10013 0.86574 0.97874 1.16997 0.77938 0.86714 0.80994 1.90852 1.50781 1.31679 1.66069 1.46087 1.63176 1.10650 1.17059 1.21125 0.95588 0.84491 0.94216 0.88990 1.21891 0.96982 0.98344 0.99085 1.21486 0.99058 0.96218 0.98560 1.22300 0.95498 1.02055 0.97913 1.20091 0.88298 0.93208 0.91093 0.93252 1.42401 1.35837 1.08908 1.49302 1.19291 1.09607 0.88679 1.19245 0.91042 1.24747 0.99546 0.96705 1.00043 1.69666 1.33221 1.21231 1.34091 0.86126 0.79997 0.82035 0.78109 1.20503 1.21891 1.21884 1.22110 0.96881 1.00565 0.97338 1.43628 1.46328 1.02916 1.16667 0.71087 1.73082 1.16589 1.19873 1.00177 0.92484 0.91875 0.92177 0.92462 0.92418 0.92016 0.92031 0.91836 0.92330 0.81993 0.77314 0.92027 0.92031 0.92382 0.92051 0.92656 0.91781 0.78361 0.93577 0.91225 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.46 37.16 0.31 -0.58 16 2 C 0.02 0.12 0.96 -155.66 -0.15 -0.03 16 3 C -0.14 -0.96 8.04 37.16 0.30 -0.66 16 4 C -0.14 -0.91 8.20 37.16 0.30 -0.60 16 5 C 0.04 0.37 5.65 -82.47 -0.47 -0.09 16 6 C -0.15 -1.57 10.12 -38.99 -0.39 -1.97 16 7 C -0.03 -0.37 7.16 -82.06 -0.59 -0.96 16 8 C 0.59 7.38 7.77 -12.64 -0.10 7.28 16 9 O -0.52 -8.30 16.58 5.24 0.09 -8.21 16 10 N -0.72 -7.83 5.07 -54.96 -0.28 -8.11 16 11 C 0.15 1.96 2.46 -67.93 -0.17 1.79 16 12 H 0.09 1.37 7.57 -51.93 -0.39 0.97 16 13 C -0.12 -1.59 5.49 -26.73 -0.15 -1.73 16 14 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 15 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 16 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 18 N -0.72 -17.40 5.12 -53.43 -0.27 -17.67 16 19 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 C -0.13 -1.93 4.86 -26.73 -0.13 -2.06 16 28 N -0.38 -3.40 6.85 33.48 0.23 -3.17 16 29 H 0.44 2.64 8.22 -190.46 -1.57 1.08 16 30 N -0.26 -2.71 11.48 33.63 0.39 -2.32 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.06 0.39 7.60 -51.93 -0.39 -0.01 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.16 1.59 7.79 -52.49 -0.41 1.18 16 41 H 0.39 3.18 7.79 -40.82 -0.32 2.86 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.38 9.75 7.80 -40.82 -0.32 9.43 16 49 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 409.02 15.07 6.16 6.16 Total: -1.00 -32.40 409.02 -10.07 -42.47 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -10.13 Total: 8.33 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.96 Total: -7.65 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.79 Total: -58.25 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.40 -10.07 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981191865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.105 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds