Wall clock time and date at job start Tue Mar 31 2020 20:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46770 * 2 1 4 4 C 1.53001 * 109.46828 * 240.00368 * 2 1 3 5 5 C 1.50696 * 109.47141 * 120.00139 * 2 1 3 6 6 C 1.39668 * 126.07247 * 74.99758 * 5 2 1 7 7 C 1.38403 * 105.36326 * 180.02562 * 6 5 2 8 8 C 1.47158 * 126.88599 * 180.02562 * 7 6 5 9 9 O 1.21637 * 120.00108 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00072 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99703 * 179.97438 * 10 8 7 12 12 H 1.08991 * 109.47166 * 35.00585 * 11 10 8 13 13 C 1.52998 * 109.47340 * 275.00144 * 11 10 8 14 14 C 1.52996 * 109.47273 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46903 * 60.00109 * 14 13 11 16 16 C 1.52998 * 109.47067 * 300.00017 * 15 14 13 17 17 H 1.08995 * 109.47085 * 299.99751 * 16 15 14 18 18 N 1.46501 * 109.46839 * 180.02562 * 16 15 14 19 19 C 1.36935 * 120.00270 * 85.00059 * 18 16 15 20 20 H 1.08003 * 119.99948 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00328 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99939 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47146 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47046 * 120.00601 * 23 21 19 26 26 H 1.48503 * 109.46785 * 240.00284 * 23 21 19 27 27 C 1.52996 * 109.47273 * 60.00209 * 16 15 14 28 28 N 1.36604 * 106.22894 * 0.02562 * 7 6 5 29 29 H 0.96995 * 125.18769 * 180.02562 * 28 7 6 30 30 N 1.28443 * 109.61888 * 359.97438 * 28 7 6 31 31 H 1.09002 * 109.47458 * 299.99996 * 1 2 3 32 32 H 1.09007 * 109.47465 * 59.99762 * 1 2 3 33 33 H 1.08998 * 109.47130 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46641 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47146 * 299.99705 * 3 2 1 36 36 H 1.08994 * 109.46951 * 60.00425 * 3 2 1 37 37 H 1.09001 * 109.46823 * 299.99232 * 4 2 1 38 38 H 1.08993 * 109.47503 * 60.00177 * 4 2 1 39 39 H 1.09005 * 109.46457 * 180.02562 * 4 2 1 40 40 H 1.07998 * 127.31647 * 0.02562 * 6 5 2 41 41 H 0.96994 * 120.00066 * 0.02562 * 10 8 7 42 42 H 1.09000 * 109.47505 * 300.00895 * 13 11 10 43 43 H 1.09005 * 109.46751 * 60.00512 * 13 11 10 44 44 H 1.08995 * 109.47154 * 179.97438 * 14 13 11 45 45 H 1.09007 * 109.47162 * 300.00375 * 14 13 11 46 46 H 1.08996 * 109.46860 * 60.00617 * 15 14 13 47 47 H 1.09002 * 109.46776 * 180.02562 * 15 14 13 48 48 H 0.97001 * 120.00045 * 265.00382 * 18 16 15 49 49 H 0.96992 * 120.00026 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.47590 * 179.97438 * 27 16 15 51 51 H 1.09007 * 109.47162 * 59.99625 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 2.0309 -2.0911 1.4410 7 6 2.5814 -2.2709 2.6981 8 6 2.8033 -3.5503 3.3904 9 8 2.4909 -4.5954 2.8521 10 7 3.3537 -3.5642 4.6206 11 6 3.5741 -4.8380 5.3101 12 1 3.8418 -5.6036 4.5820 13 6 2.2938 -5.2520 6.0383 14 6 2.5242 -6.5819 6.7588 15 6 3.6589 -6.4227 7.7727 16 6 4.9392 -6.0086 7.0446 17 1 5.2071 -6.7745 6.3168 18 7 6.0257 -5.8568 8.0154 19 6 6.7555 -6.9488 8.4028 20 1 6.5297 -7.9222 7.9929 21 6 7.7853 -6.8048 9.3223 22 7 8.0601 -5.6187 9.8223 23 14 8.7803 -8.2947 9.8512 24 1 8.2755 -9.5018 9.1488 25 1 10.2092 -8.0834 9.5067 26 1 8.6475 -8.4832 11.3182 27 6 4.7088 -4.6788 6.3241 28 7 2.8774 -1.0226 3.1673 29 1 3.2771 -0.8299 4.0298 30 7 2.5464 -0.1430 2.2917 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7215 -1.2490 40 1 1.6758 -2.8560 0.7662 41 1 3.6032 -2.7309 5.0498 42 1 2.0260 -4.4863 6.7663 43 1 1.4854 -5.3651 5.3159 44 1 1.6122 -6.8766 7.2779 45 1 2.7922 -7.3479 6.0309 46 1 3.3908 -5.6569 8.5006 47 1 3.8233 -7.3703 8.2857 48 1 6.2282 -4.9826 8.3839 49 1 8.7795 -5.5181 10.4650 50 1 5.6210 -4.3835 5.8056 51 1 4.4408 -3.9128 7.0519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981191865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:01 Heat of formation + Delta-G solvation = -4.197437 kcal Electronic energy + Delta-G solvation = -28622.409033 eV Core-core repulsion = 24749.325041 eV Total energy + Delta-G solvation = -3873.083992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.66356 -41.01230 -39.25663 -37.83423 -36.32295 -34.95841 -32.98640 -32.16387 -32.01137 -30.48740 -29.38181 -28.09029 -28.04845 -25.75671 -24.89844 -23.76042 -23.20128 -22.32830 -21.65860 -21.09662 -20.07654 -19.40124 -19.02910 -17.54510 -16.93561 -16.88939 -16.51785 -16.11494 -15.86859 -15.67153 -15.37638 -15.17852 -15.04123 -14.89349 -14.73955 -14.67164 -14.43589 -14.19135 -13.62066 -13.43442 -13.07666 -12.95165 -12.92502 -12.86132 -12.48817 -12.36553 -12.28156 -12.16030 -12.04115 -12.00429 -11.99261 -11.87034 -11.69046 -11.64945 -11.43374 -11.38697 -11.08336 -10.89622 -10.38502 -10.14571 -10.06876 -9.00836 -7.95391 -5.22879 0.13950 1.46421 1.47017 1.50326 1.56645 1.73364 1.91341 2.08824 2.55399 3.34813 3.38445 3.55364 3.62905 3.82219 3.83104 4.00943 4.14357 4.18040 4.25200 4.28670 4.35051 4.39221 4.48114 4.51300 4.55739 4.64200 4.69122 4.74895 4.86237 4.87547 4.97127 4.97229 5.07568 5.09197 5.10138 5.14359 5.17188 5.20643 5.27528 5.32439 5.35378 5.49128 5.49251 5.49650 5.51046 5.52534 5.64285 5.94997 6.27620 6.34310 6.90709 6.99275 7.34157 8.09862 8.33097 9.28089 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.001988 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.411105 B =14081.836961 C =14648.975742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.013 3.987 3 C -0.132 4.132 4 C -0.138 4.138 5 C 0.035 3.965 6 C -0.157 4.157 7 C -0.043 4.043 8 C 0.594 3.406 9 O -0.557 6.557 10 N -0.707 5.707 11 C 0.160 3.840 12 H 0.075 0.925 13 C -0.117 4.117 14 C -0.106 4.106 15 C -0.127 4.127 16 C 0.176 3.824 17 H 0.037 0.963 18 N -0.735 5.735 19 C -0.235 4.235 20 H 0.073 0.927 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.295 1.295 26 H -0.294 1.294 27 C -0.116 4.116 28 N -0.367 5.367 29 H 0.456 0.544 30 N -0.273 5.273 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.166 0.834 41 H 0.410 0.590 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.374 0.626 49 H 0.250 0.750 50 H 0.062 0.938 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.177 13.468 -19.516 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.012 3.988 3 C -0.189 4.189 4 C -0.196 4.196 5 C -0.123 4.123 6 C -0.186 4.186 7 C -0.172 4.172 8 C 0.380 3.620 9 O -0.434 6.434 10 N -0.357 5.357 11 C 0.055 3.945 12 H 0.093 0.907 13 C -0.156 4.156 14 C -0.145 4.145 15 C -0.167 4.167 16 C 0.068 3.932 17 H 0.055 0.945 18 N -0.375 5.375 19 C -0.367 4.367 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.797 3.203 24 H -0.192 1.192 25 H -0.222 1.222 26 H -0.221 1.221 27 C -0.155 4.155 28 N -0.085 5.085 29 H 0.304 0.696 30 N -0.107 5.107 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.183 0.817 41 H 0.246 0.754 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.206 0.794 49 H 0.059 0.941 50 H 0.081 0.919 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.039 13.522 -19.422 29.161 hybrid contribution 1.226 -0.913 1.344 2.035 sum -15.813 12.609 -18.078 27.126 Atomic orbital electron populations 1.21858 0.92405 1.02441 1.02587 1.19064 0.96091 0.94922 0.88765 1.21744 1.00687 0.94068 1.02403 1.21885 1.00896 1.00692 0.96108 1.22301 1.02527 0.91430 0.96035 1.22171 1.03921 0.97111 0.95398 1.21581 1.11022 0.86452 0.98133 1.17114 0.77253 0.86746 0.80927 1.90835 1.52502 1.33065 1.66963 1.45852 1.62575 1.10667 1.16637 1.20846 0.95173 0.85060 0.93397 0.90651 1.21825 0.96508 0.98044 0.99184 1.21412 0.98361 0.96955 0.97769 1.22106 0.95638 1.00684 0.98310 1.20311 0.87602 0.95104 0.90208 0.94450 1.42573 1.37007 1.07711 1.50202 1.19619 1.09236 0.89555 1.18246 0.90907 1.25493 1.01181 0.99192 1.00967 1.69802 1.33992 1.23027 1.35111 0.85151 0.78216 0.79524 0.77377 1.19220 1.22205 1.22141 1.21890 0.97416 0.98572 0.97577 1.43643 1.45740 1.02067 1.17024 0.69619 1.73086 1.16848 1.20150 1.00589 0.93257 0.90069 0.92334 0.93405 0.90606 0.92837 0.92036 0.90059 0.93199 0.81688 0.75430 0.90652 0.91768 0.90540 0.92180 0.92766 0.93996 0.79432 0.94115 0.91905 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.46 71.98 0.61 -0.92 16 2 C 0.01 0.18 0.96 -52.93 -0.05 0.13 16 3 C -0.13 -1.67 8.04 71.98 0.58 -1.09 16 4 C -0.14 -1.57 8.20 71.98 0.59 -0.98 16 5 C 0.03 0.64 5.65 43.05 0.24 0.89 16 6 C -0.16 -3.19 10.12 22.65 0.23 -2.96 16 7 C -0.04 -0.89 7.16 40.78 0.29 -0.59 16 8 C 0.59 14.24 7.77 86.59 0.67 14.91 16 9 O -0.56 -17.49 16.58 -4.15 -0.07 -17.55 16 10 N -0.71 -14.24 5.07 -446.05 -2.26 -16.51 16 11 C 0.16 3.97 2.46 44.99 0.11 4.08 16 12 H 0.08 2.19 7.57 -2.39 -0.02 2.17 16 13 C -0.12 -2.73 5.49 30.59 0.17 -2.57 16 14 C -0.11 -2.74 5.92 30.59 0.18 -2.55 16 15 C -0.13 -4.21 5.50 30.59 0.17 -4.05 16 16 C 0.18 6.56 2.77 44.99 0.12 6.69 16 17 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 18 N -0.74 -35.62 5.12 -322.95 -1.65 -37.27 16 19 C -0.23 -12.79 9.93 84.03 0.83 -11.96 16 20 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 21 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 22 N -0.97 -58.28 13.06 21.65 0.28 -57.99 16 23 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 27 C -0.12 -3.33 4.86 30.59 0.15 -3.18 16 28 N -0.37 -6.06 6.85 -48.00 -0.33 -6.39 16 29 H 0.46 4.62 8.22 -220.01 -1.81 2.81 16 30 N -0.27 -5.26 11.48 -47.50 -0.55 -5.80 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 37 H 0.06 0.70 7.60 -2.39 -0.02 0.68 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.17 3.15 7.79 -2.91 -0.02 3.13 16 41 H 0.41 5.74 7.79 -92.71 -0.72 5.01 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.53 8.14 -2.38 -0.02 1.52 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.37 19.26 7.80 -92.71 -0.72 18.54 16 49 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 50 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 51 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -69.63 409.02 0.50 -69.13 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -2.32 Total: 32.42 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.37 Total: -7.99 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -4.51 Total: -123.96 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.07 Total: -17.55 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -69.63 0.50 -69.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981191865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.934 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds