Wall clock time and date at job start Tue Mar 31 2020 19:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.50701 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.38045 * 126.28947 * 270.00236 * 4 3 2 6 6 C 1.47433 * 126.41407 * 0.02562 * 5 4 3 7 7 O 1.21595 * 120.00365 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99519 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99436 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47338 * 34.99475 * 9 8 6 11 11 C 1.53003 * 109.46967 * 274.98937 * 9 8 6 12 12 C 1.53003 * 109.46811 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46860 * 60.01012 * 12 11 9 14 14 C 1.52999 * 109.47188 * 299.99296 * 13 12 11 15 15 H 1.08999 * 109.47091 * 300.00470 * 14 13 12 16 16 N 1.46499 * 109.47341 * 180.02562 * 14 13 12 17 17 C 1.36939 * 119.99933 * 85.27615 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.53001 * 109.46944 * 60.00112 * 14 13 12 26 26 C 1.41287 * 107.16930 * 180.26313 * 5 4 3 27 27 N 1.30447 * 108.02204 * 359.58731 * 26 5 4 28 28 N 1.34251 * 126.29369 * 90.02496 * 4 3 2 29 29 C 1.46506 * 125.75392 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47136 * 59.99887 * 1 2 3 31 31 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47209 * 300.00014 * 1 2 3 33 33 H 1.09001 * 109.46994 * 240.00451 * 2 1 3 34 34 H 1.08991 * 109.47174 * 120.00114 * 2 1 3 35 35 H 1.09001 * 109.46853 * 60.00365 * 3 2 1 36 36 H 1.09001 * 109.47243 * 300.00048 * 3 2 1 37 37 H 0.96995 * 120.00329 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.46473 * 60.00406 * 11 9 8 39 39 H 1.08999 * 109.47531 * 300.00421 * 11 9 8 40 40 H 1.08993 * 109.47787 * 300.00199 * 12 11 9 41 41 H 1.09002 * 109.46570 * 179.97438 * 12 11 9 42 42 H 1.09001 * 109.47132 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.47488 * 59.99523 * 13 12 11 44 44 H 0.97001 * 119.99790 * 264.99588 * 16 14 13 45 45 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.46935 * 60.00262 * 25 14 13 47 47 H 1.09004 * 109.47138 * 180.02562 * 25 14 13 48 48 H 1.08003 * 125.98809 * 179.74466 * 26 5 4 49 49 H 1.08993 * 109.47166 * 89.99802 * 29 28 4 50 50 H 1.08999 * 109.47291 * 210.00173 * 29 28 4 51 51 H 1.09003 * 109.46555 * 329.99883 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3645 1.4423 1.1117 6 6 3.9268 1.4415 2.5196 7 8 2.7407 1.4414 2.7875 8 7 4.8413 1.4420 3.5095 9 6 4.4063 1.4417 4.9085 10 1 3.4948 0.8519 5.0055 11 6 4.1344 2.8787 5.3582 12 6 3.6795 2.8783 6.8191 13 6 4.7763 2.2690 7.6946 14 6 5.0484 0.8321 7.2449 15 1 4.1368 0.2424 7.3415 16 7 6.0982 0.2484 8.0836 17 6 5.7743 -0.3325 9.2807 18 1 4.7455 -0.3564 9.6085 19 6 6.7683 -0.8908 10.0726 20 7 8.0221 -0.8613 9.6732 21 14 6.3266 -1.6825 11.7058 22 1 5.3816 -2.8041 11.4727 23 1 7.5584 -2.1993 12.3546 24 1 5.6888 -0.6732 12.5889 25 6 5.5032 0.8323 5.7841 26 6 5.6992 1.4487 0.6484 27 7 5.6737 1.4434 -0.6558 28 7 4.3412 1.4432 -1.0830 29 6 3.8890 1.4435 -2.4766 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 5.7874 1.4424 3.2958 38 1 3.3527 3.3126 4.7347 39 1 5.0459 3.4684 5.2612 40 1 2.7679 2.2887 6.9157 41 1 3.4862 3.9021 7.1396 42 1 4.4524 2.2691 8.7354 43 1 5.6879 2.8586 7.5980 44 1 7.0221 0.2698 7.7891 45 1 8.7167 -1.2511 10.2269 46 1 6.4148 1.4220 5.6875 47 1 5.6966 -0.1914 5.4636 48 1 6.5853 1.4541 1.2658 49 1 3.7765 2.4711 -2.8218 50 1 4.6236 0.9301 -3.0970 51 1 2.9306 0.9292 -2.5476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981194807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:38 Heat of formation + Delta-G solvation = 20.803486 kcal Electronic energy + Delta-G solvation = -29041.467700 eV Core-core repulsion = 25169.467830 eV Total energy + Delta-G solvation = -3871.999871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.74978 -39.52588 -37.72777 -35.61093 -34.51353 -33.66528 -33.12898 -31.10209 -30.91750 -29.45826 -27.88174 -27.11614 -26.79259 -23.74498 -23.06028 -22.02285 -21.91855 -21.24608 -20.17864 -19.98669 -19.22391 -17.74422 -16.98078 -16.18000 -16.03957 -15.86055 -15.20660 -14.88815 -14.74820 -14.53505 -14.32654 -13.93550 -13.72362 -13.66581 -13.56296 -13.28574 -13.14313 -13.04873 -12.89578 -12.60376 -12.51669 -12.07301 -11.99843 -11.77283 -11.57374 -11.22083 -10.95982 -10.86976 -10.85586 -10.82424 -10.66504 -10.29276 -10.22718 -10.12103 -9.97410 -9.69518 -9.64189 -9.50088 -8.98719 -8.84106 -8.67345 -6.92773 -5.73835 -3.02170 1.30034 1.99283 2.03618 3.35050 3.46452 3.47403 3.50877 3.51719 4.12857 4.16967 4.53913 4.61147 4.66300 4.70744 4.76110 4.91443 4.95479 5.01518 5.06269 5.15592 5.20758 5.27157 5.40302 5.43231 5.52126 5.55427 5.61218 5.67926 5.75207 5.79299 5.84731 5.94463 5.99093 6.01764 6.04048 6.09898 6.16536 6.20490 6.37698 6.43092 6.54795 6.57972 6.62205 6.73359 6.79301 7.01913 7.17523 7.28375 7.69110 7.73396 8.39869 8.45175 9.56093 10.13982 10.48724 11.48908 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002270 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.078664 B =12329.292795 C =12666.585725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.065 4.065 4 C 0.159 3.841 5 C -0.294 4.294 6 C 0.595 3.405 7 O -0.548 6.548 8 N -0.720 5.720 9 C 0.152 3.848 10 H 0.087 0.913 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.136 4.136 14 C 0.184 3.816 15 H 0.048 0.952 16 N -0.724 5.724 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.130 4.130 26 C 0.083 3.917 27 N -0.300 5.300 28 N -0.364 5.364 29 C 0.096 3.904 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.190 0.810 49 H 0.078 0.922 50 H 0.093 0.907 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 6.945 -25.579 28.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.104 4.104 4 C 0.027 3.973 5 C -0.308 4.308 6 C 0.382 3.618 7 O -0.427 6.427 8 N -0.370 5.370 9 C 0.048 3.952 10 H 0.106 0.894 11 C -0.162 4.162 12 C -0.153 4.153 13 C -0.177 4.177 14 C 0.073 3.927 15 H 0.066 0.934 16 N -0.365 5.365 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.168 4.168 26 C -0.104 4.104 27 N -0.118 5.118 28 N -0.143 5.143 29 C -0.046 4.046 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.207 0.793 49 H 0.097 0.903 50 H 0.112 0.888 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.056 6.840 -26.453 29.475 hybrid contribution 0.405 -0.361 1.385 1.487 sum -10.651 6.480 -25.068 27.997 Atomic orbital electron populations 1.21738 0.94925 1.01972 1.02060 1.21393 0.96354 0.94854 1.02435 1.20565 0.85698 0.99264 1.04872 1.21531 0.94616 0.94944 0.86241 1.20074 0.92772 1.24184 0.93793 1.17159 0.85575 0.75514 0.83520 1.90718 1.16456 1.51331 1.84207 1.45914 1.09430 1.75399 1.06208 1.20989 0.98799 0.96765 0.78658 0.89443 1.21881 1.01136 0.96357 0.96816 1.21483 0.99261 1.00379 0.94180 1.22285 0.97374 0.98743 0.99288 1.20093 0.92838 0.92088 0.87655 0.93398 1.42398 1.05272 1.68421 1.20376 1.19203 0.93206 1.28993 0.95326 0.91220 1.24732 0.95387 1.01896 0.99040 1.69652 0.99158 1.50863 1.38624 0.86282 0.76839 0.79251 0.83915 1.21294 1.21763 1.21301 1.22095 0.97490 1.00918 0.96346 1.24058 0.97350 0.97035 0.91982 1.77189 0.95946 1.25350 1.13359 1.48340 1.04099 1.55588 1.06310 1.21959 1.01328 1.03783 0.77483 0.92943 0.92462 0.91941 0.92700 0.90783 0.86843 0.90921 0.76958 0.92180 0.92150 0.92205 0.92625 0.91985 0.92696 0.78344 0.93530 0.91748 0.91336 0.79295 0.90317 0.88809 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.11 -0.93 5.92 -26.73 -0.16 -1.09 16 3 C -0.07 -0.56 4.67 -27.88 -0.13 -0.69 16 4 C 0.16 1.66 6.26 -81.60 -0.51 1.15 16 5 C -0.29 -3.46 6.13 -105.07 -0.64 -4.10 16 6 C 0.59 7.98 7.78 -12.52 -0.10 7.89 16 7 O -0.55 -8.68 14.50 5.28 0.08 -8.60 16 8 N -0.72 -8.84 5.07 -54.87 -0.28 -9.12 16 9 C 0.15 2.15 2.45 -67.92 -0.17 1.98 16 10 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 11 C -0.12 -1.69 5.49 -26.73 -0.15 -1.83 16 12 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 13 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 14 C 0.18 3.58 2.77 -67.93 -0.19 3.39 16 15 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 16 N -0.72 -17.89 5.12 -53.43 -0.27 -18.17 16 17 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C -0.13 -2.06 4.86 -26.73 -0.13 -2.19 16 26 C 0.08 0.88 11.50 -16.98 -0.20 0.68 16 27 N -0.30 -3.39 12.50 30.86 0.39 -3.00 16 28 N -0.36 -3.47 3.98 -63.34 -0.25 -3.72 16 29 C 0.10 0.48 11.06 59.85 0.66 1.14 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 1.20 6.50 -51.93 -0.34 0.87 16 36 H 0.07 0.44 7.69 -51.93 -0.40 0.04 16 37 H 0.40 3.96 7.56 -40.82 -0.31 3.65 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.19 1.42 7.50 -52.48 -0.39 1.02 16 49 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 0.28 7.62 -51.93 -0.40 -0.12 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -33.62 409.37 -9.21 -42.83 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.85 Total: 9.51 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.89 Total: -5.91 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.31 Total: -61.43 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.62 -9.21 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981194807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.635 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds