Wall clock time and date at job start Tue Mar 31 2020 19:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.50701 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.38045 * 126.28947 * 270.00236 * 4 3 2 6 6 C 1.47433 * 126.41407 * 0.02562 * 5 4 3 7 7 O 1.21595 * 120.00365 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99519 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99436 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47338 * 34.99475 * 9 8 6 11 11 C 1.53003 * 109.46967 * 274.98937 * 9 8 6 12 12 C 1.53003 * 109.46811 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46860 * 60.01012 * 12 11 9 14 14 C 1.52999 * 109.47188 * 299.99296 * 13 12 11 15 15 H 1.08999 * 109.47091 * 300.00470 * 14 13 12 16 16 N 1.46499 * 109.47341 * 180.02562 * 14 13 12 17 17 C 1.36939 * 119.99933 * 85.27615 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.53001 * 109.46944 * 60.00112 * 14 13 12 26 26 C 1.41287 * 107.16930 * 180.26313 * 5 4 3 27 27 N 1.30447 * 108.02204 * 359.58731 * 26 5 4 28 28 N 1.34251 * 126.29369 * 90.02496 * 4 3 2 29 29 C 1.46506 * 125.75392 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47136 * 59.99887 * 1 2 3 31 31 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47209 * 300.00014 * 1 2 3 33 33 H 1.09001 * 109.46994 * 240.00451 * 2 1 3 34 34 H 1.08991 * 109.47174 * 120.00114 * 2 1 3 35 35 H 1.09001 * 109.46853 * 60.00365 * 3 2 1 36 36 H 1.09001 * 109.47243 * 300.00048 * 3 2 1 37 37 H 0.96995 * 120.00329 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.46473 * 60.00406 * 11 9 8 39 39 H 1.08999 * 109.47531 * 300.00421 * 11 9 8 40 40 H 1.08993 * 109.47787 * 300.00199 * 12 11 9 41 41 H 1.09002 * 109.46570 * 179.97438 * 12 11 9 42 42 H 1.09001 * 109.47132 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.47488 * 59.99523 * 13 12 11 44 44 H 0.97001 * 119.99790 * 264.99588 * 16 14 13 45 45 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.46935 * 60.00262 * 25 14 13 47 47 H 1.09004 * 109.47138 * 180.02562 * 25 14 13 48 48 H 1.08003 * 125.98809 * 179.74466 * 26 5 4 49 49 H 1.08993 * 109.47166 * 89.99802 * 29 28 4 50 50 H 1.08999 * 109.47291 * 210.00173 * 29 28 4 51 51 H 1.09003 * 109.46555 * 329.99883 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3645 1.4423 1.1117 6 6 3.9268 1.4415 2.5196 7 8 2.7407 1.4414 2.7875 8 7 4.8413 1.4420 3.5095 9 6 4.4063 1.4417 4.9085 10 1 3.4948 0.8519 5.0055 11 6 4.1344 2.8787 5.3582 12 6 3.6795 2.8783 6.8191 13 6 4.7763 2.2690 7.6946 14 6 5.0484 0.8321 7.2449 15 1 4.1368 0.2424 7.3415 16 7 6.0982 0.2484 8.0836 17 6 5.7743 -0.3325 9.2807 18 1 4.7455 -0.3564 9.6085 19 6 6.7683 -0.8908 10.0726 20 7 8.0221 -0.8613 9.6732 21 14 6.3266 -1.6825 11.7058 22 1 5.3816 -2.8041 11.4727 23 1 7.5584 -2.1993 12.3546 24 1 5.6888 -0.6732 12.5889 25 6 5.5032 0.8323 5.7841 26 6 5.6992 1.4487 0.6484 27 7 5.6737 1.4434 -0.6558 28 7 4.3412 1.4432 -1.0830 29 6 3.8890 1.4435 -2.4766 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 5.7874 1.4424 3.2958 38 1 3.3527 3.3126 4.7347 39 1 5.0459 3.4684 5.2612 40 1 2.7679 2.2887 6.9157 41 1 3.4862 3.9021 7.1396 42 1 4.4524 2.2691 8.7354 43 1 5.6879 2.8586 7.5980 44 1 7.0221 0.2698 7.7891 45 1 8.7167 -1.2511 10.2269 46 1 6.4148 1.4220 5.6875 47 1 5.6966 -0.1914 5.4636 48 1 6.5853 1.4541 1.2658 49 1 3.7765 2.4711 -2.8218 50 1 4.6236 0.9301 -3.0970 51 1 2.9306 0.9292 -2.5476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981194807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:36 Heat of formation + Delta-G solvation = -0.635189 kcal Electronic energy + Delta-G solvation = -29042.397351 eV Core-core repulsion = 25169.467830 eV Total energy + Delta-G solvation = -3872.929521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.52693 -40.66707 -39.03670 -36.40403 -36.00584 -34.75840 -34.15334 -32.90114 -31.71638 -30.66821 -29.45131 -27.91576 -27.41770 -25.68243 -24.08639 -23.16127 -22.68501 -22.43748 -21.23894 -21.02515 -20.41105 -19.16998 -18.45842 -17.35562 -16.83035 -16.68709 -16.41221 -15.98549 -15.84352 -15.59482 -15.49878 -15.31381 -15.04058 -14.93016 -14.63408 -14.40589 -14.19665 -13.98917 -13.60799 -13.52937 -13.40314 -13.35761 -13.11515 -12.88166 -12.77519 -12.43370 -12.25964 -12.19016 -12.13245 -12.01592 -11.95174 -11.93762 -11.60860 -11.53061 -11.41628 -11.32007 -10.84200 -10.71485 -10.39350 -10.03125 -9.56545 -8.97534 -7.91837 -5.19463 0.49758 1.15714 1.40651 1.48186 1.50690 1.56607 2.31952 2.49950 2.58961 3.41252 3.47128 3.51361 3.68718 3.88980 3.92170 4.03166 4.08915 4.11072 4.18968 4.29911 4.35757 4.38510 4.41531 4.45441 4.55980 4.58819 4.59854 4.62111 4.64790 4.72528 4.79239 4.80530 4.91325 4.96513 5.07351 5.16832 5.21456 5.22256 5.26498 5.33072 5.39580 5.40466 5.42101 5.52830 5.55003 5.60431 5.71098 5.88810 6.30945 6.50289 6.72102 7.36997 7.38555 8.13406 8.37093 9.31414 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002270 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.078664 B =12329.292795 C =12666.585725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.060 4.060 4 C 0.160 3.840 5 C -0.320 4.320 6 C 0.594 3.406 7 O -0.577 6.577 8 N -0.712 5.712 9 C 0.164 3.836 10 H 0.069 0.931 11 C -0.115 4.115 12 C -0.106 4.106 13 C -0.126 4.126 14 C 0.178 3.822 15 H 0.036 0.964 16 N -0.736 5.736 17 C -0.236 4.236 18 H 0.072 0.928 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.279 1.279 25 C -0.115 4.115 26 C 0.084 3.916 27 N -0.323 5.323 28 N -0.360 5.360 29 C 0.083 3.917 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.409 0.591 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.212 0.788 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 7.761 -27.515 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.099 4.099 4 C 0.025 3.975 5 C -0.335 4.335 6 C 0.383 3.617 7 O -0.459 6.459 8 N -0.363 5.363 9 C 0.058 3.942 10 H 0.087 0.913 11 C -0.153 4.153 12 C -0.144 4.144 13 C -0.166 4.166 14 C 0.069 3.931 15 H 0.054 0.946 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.090 0.910 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.798 3.202 22 H -0.206 1.206 23 H -0.222 1.222 24 H -0.205 1.205 25 C -0.154 4.154 26 C -0.103 4.103 27 N -0.142 5.142 28 N -0.139 5.139 29 C -0.057 4.057 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.245 0.755 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.228 0.772 49 H 0.114 0.886 50 H 0.119 0.881 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.097 7.677 -28.437 31.842 hybrid contribution 0.657 -0.601 1.872 2.073 sum -11.440 7.076 -26.565 29.777 Atomic orbital electron populations 1.21720 0.93906 1.02317 1.02462 1.21335 0.97184 0.94459 1.01584 1.20563 0.84591 0.99463 1.05318 1.21801 0.95396 0.93935 0.86338 1.20063 0.93842 1.26402 0.93166 1.17407 0.85169 0.74808 0.84288 1.90702 1.17659 1.52779 1.84721 1.45740 1.10122 1.75181 1.05215 1.20699 0.97176 0.96819 0.79460 0.91274 1.21804 1.01693 0.95845 0.96000 1.21409 0.97828 1.01148 0.94043 1.22091 0.98425 0.97414 0.98707 1.20301 0.91082 0.92606 0.89114 0.94613 1.42577 1.05872 1.68764 1.20325 1.19551 0.93237 1.27902 0.96147 0.90990 1.25502 0.95437 1.03378 1.02513 1.69802 0.99954 1.52417 1.39816 0.85278 0.76352 0.78479 0.80079 1.20595 1.22200 1.20508 1.21881 0.98410 1.00877 0.94216 1.24415 0.97663 0.96203 0.92038 1.77143 0.97229 1.26161 1.13675 1.48679 1.03367 1.54261 1.07555 1.22381 1.02592 1.05410 0.75277 0.90747 0.92181 0.93303 0.91145 0.93981 0.89015 0.87769 0.75485 0.91963 0.90988 0.92295 0.90669 0.94052 0.92855 0.79464 0.94109 0.90695 0.92236 0.77151 0.88623 0.88081 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 3 C -0.06 -0.96 4.67 29.85 0.14 -0.82 16 4 C 0.16 3.12 6.26 42.14 0.26 3.39 16 5 C -0.32 -7.31 6.13 -20.15 -0.12 -7.43 16 6 C 0.59 15.81 7.78 86.67 0.67 16.48 16 7 O -0.58 -18.50 14.50 -4.01 -0.06 -18.55 16 8 N -0.71 -16.99 5.07 -445.78 -2.26 -19.25 16 9 C 0.16 4.53 2.45 44.99 0.11 4.64 16 10 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 11 C -0.11 -2.96 5.49 30.60 0.17 -2.80 16 12 C -0.11 -2.92 5.92 30.59 0.18 -2.74 16 13 C -0.13 -4.42 5.50 30.59 0.17 -4.25 16 14 C 0.18 6.97 2.77 44.99 0.12 7.10 16 15 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 16 N -0.74 -36.94 5.12 -322.94 -1.65 -38.59 16 17 C -0.24 -13.20 9.93 84.03 0.83 -12.37 16 18 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 19 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.97 -59.37 13.06 21.65 0.28 -59.08 16 21 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 C -0.12 -3.63 4.86 30.60 0.15 -3.48 16 26 C 0.08 1.67 11.50 85.65 0.99 2.66 16 27 N -0.32 -6.83 12.50 -56.27 -0.70 -7.54 16 28 N -0.36 -6.16 3.98 -354.31 -1.41 -7.57 16 29 C 0.08 0.60 11.06 127.77 1.41 2.01 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.92 6.50 -2.39 -0.02 1.90 16 36 H 0.10 0.96 7.69 -2.39 -0.02 0.94 16 37 H 0.41 7.68 7.56 -92.71 -0.70 6.98 16 38 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 45 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.21 2.85 7.50 -2.91 -0.02 2.83 16 49 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.11 0.29 7.62 -2.39 -0.02 0.28 16 Total: -1.00 -73.50 409.37 2.17 -71.32 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.50 Total: 34.80 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 6.45 Total: -4.17 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -5.74 Total: -132.03 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.50 2.17 -71.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981194807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.686 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds