Wall clock time and date at job start Tue Mar 31 2020 18:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47195 * 2 1 4 4 N 1.30506 * 125.65008 * 270.18278 * 3 2 1 5 5 C 1.34132 * 109.25519 * 180.29252 * 4 3 2 6 6 C 1.34672 * 108.02111 * 359.72107 * 5 4 3 7 7 N 1.35039 * 125.65211 * 90.00381 * 3 2 1 8 8 C 1.46508 * 126.39479 * 359.97438 * 7 3 2 9 9 H 1.09000 * 109.46914 * 359.71556 * 8 7 3 10 10 C 1.53005 * 109.46934 * 239.71638 * 8 7 3 11 11 C 1.53001 * 109.46864 * 119.71575 * 8 7 3 12 12 C 1.50698 * 109.46854 * 185.00159 * 11 8 7 13 13 O 1.21285 * 119.99997 * 359.97438 * 12 11 8 14 14 N 1.34778 * 119.99988 * 180.02562 * 12 11 8 15 15 C 1.48216 * 119.96942 * 179.97438 * 14 12 11 16 16 C 1.47139 * 110.33900 * 102.46989 * 15 14 12 17 17 C 1.53791 * 111.84440 * 58.29738 * 16 15 14 18 18 N 1.43458 * 107.96034 * 281.66818 * 17 16 15 19 19 C 1.36944 * 118.93864 * 273.60865 * 18 17 16 20 20 H 1.08007 * 119.99808 * 27.13770 * 19 18 17 21 21 C 1.38811 * 120.00105 * 207.14078 * 19 18 17 22 22 N 1.31610 * 119.99917 * 26.49887 * 21 19 18 23 23 Si 1.86800 * 119.99932 * 206.50029 * 21 19 18 24 24 H 1.48495 * 109.47229 * 179.97438 * 23 21 19 25 25 H 1.48507 * 109.46920 * 59.99605 * 23 21 19 26 26 H 1.48500 * 109.47022 * 300.00277 * 23 21 19 27 27 C 1.48854 * 122.12630 * 93.88729 * 18 17 16 28 28 C 1.43615 * 119.96825 * 359.97438 * 14 12 11 29 29 H 1.08992 * 109.47432 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46650 * 299.99870 * 1 2 3 31 31 H 1.08997 * 109.47092 * 59.99356 * 1 2 3 32 32 H 1.09001 * 109.46663 * 240.00487 * 2 1 3 33 33 H 1.08995 * 109.47010 * 120.00112 * 2 1 3 34 34 H 1.07992 * 125.98995 * 179.72141 * 5 4 3 35 35 H 1.07992 * 126.59359 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.46684 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47253 * 299.99710 * 10 8 7 38 38 H 1.09000 * 109.47332 * 59.99909 * 10 8 7 39 39 H 1.08999 * 109.46820 * 65.00280 * 11 8 7 40 40 H 1.08993 * 109.46914 * 304.99866 * 11 8 7 41 41 H 1.08998 * 109.32711 * 342.20176 * 15 14 12 42 42 H 1.08997 * 109.32394 * 222.73612 * 15 14 12 43 43 H 1.09001 * 109.00884 * 297.68394 * 16 15 14 44 44 H 1.09005 * 108.94063 * 178.86485 * 16 15 14 45 45 H 1.09000 * 109.76678 * 162.04440 * 17 16 15 46 46 H 1.09007 * 109.80406 * 41.29987 * 17 16 15 47 47 H 0.97004 * 120.00281 * 5.78609 * 22 21 19 48 48 H 1.08992 * 109.48217 * 80.34695 * 27 18 17 49 49 H 1.09003 * 109.48432 * 200.38688 * 27 18 17 50 50 H 1.08999 * 108.87368 * 31.46947 * 28 14 12 51 51 H 1.09007 * 108.87516 * 150.00517 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2828 2.1391 -1.0605 5 6 2.7189 3.3497 -0.6819 6 6 2.7338 3.3850 0.6643 7 7 2.2948 2.1628 1.0973 8 6 2.1439 1.7372 2.4910 9 1 1.7755 0.7118 2.5199 10 6 1.1479 2.6571 3.2002 11 6 3.4993 1.8123 3.1968 12 6 3.3701 1.2593 4.5927 13 8 2.2992 0.8463 4.9846 14 7 4.4443 1.2246 5.4059 15 6 4.3163 0.6811 6.7789 16 6 4.8681 -0.6814 6.8430 17 6 6.3464 -0.7206 6.4207 18 7 6.3987 -0.6679 4.9881 19 6 6.3029 -1.8351 4.2782 20 1 5.7740 -2.6792 4.6957 21 6 6.8855 -1.9333 3.0221 22 7 7.9227 -1.1827 2.7173 23 14 6.1975 -3.1309 1.7644 24 1 6.9911 -3.0441 0.5123 25 1 4.7814 -2.7879 1.4773 26 1 6.2725 -4.5125 2.3038 27 6 6.5599 0.6137 4.2484 28 6 5.7119 1.7144 4.9413 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.0076 4.1549 -1.3411 35 1 3.0339 4.2175 1.2832 36 1 1.0360 2.3407 4.2372 37 1 1.5163 3.6826 3.1713 38 1 0.1823 2.6037 2.6973 39 1 3.8261 2.8510 3.2462 40 1 4.2315 1.2271 2.6405 41 1 3.2637 0.6577 7.0609 42 1 4.8587 1.3231 7.4729 43 1 4.2926 -1.3290 6.1816 44 1 4.7809 -1.0507 7.8649 45 1 6.8059 -1.6441 6.7728 46 1 6.8732 0.1365 6.8404 47 1 8.3322 -0.6227 3.3954 48 1 7.6102 0.9047 4.2500 49 1 6.2195 0.4858 3.2208 50 1 5.5388 2.5250 4.2335 51 1 6.2729 2.1030 5.7914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981198188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:47 Heat of formation + Delta-G solvation = 46.073672 kcal Electronic energy + Delta-G solvation = -31249.748701 eV Core-core repulsion = 27378.844628 eV Total energy + Delta-G solvation = -3870.904073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.09633 -40.08858 -37.49068 -35.58001 -34.53918 -33.75066 -33.06931 -30.99538 -30.57355 -28.54367 -28.38054 -27.41931 -25.36113 -23.87808 -23.81325 -23.23225 -21.96961 -20.79189 -19.88067 -19.25465 -18.52345 -17.67876 -17.23909 -16.26202 -16.13009 -15.63116 -15.28740 -14.79509 -14.45509 -14.33117 -14.14297 -13.99659 -13.68649 -13.55880 -13.42990 -13.23660 -13.09478 -12.92937 -12.72718 -12.40436 -12.35565 -12.21388 -11.86068 -11.62016 -11.46964 -11.38005 -11.22560 -11.17802 -11.01416 -10.76134 -10.43141 -10.38951 -10.36839 -10.06106 -9.89143 -9.58257 -9.46481 -9.41652 -8.40227 -8.29970 -8.23329 -6.97629 -6.13954 -3.32170 2.15584 2.72379 2.82596 3.28043 3.37926 3.44565 3.48352 3.66199 4.44266 4.48158 4.53115 4.67331 4.74196 4.89403 4.99270 5.04133 5.16220 5.25532 5.27780 5.33407 5.39564 5.40341 5.41965 5.50751 5.56037 5.60776 5.68694 5.75272 5.78093 5.80364 5.83361 5.85074 5.89692 6.02893 6.04502 6.10339 6.16518 6.25318 6.33356 6.48436 6.55346 6.66968 6.79481 6.84623 6.89218 7.05447 7.30617 7.69157 7.98231 8.24966 8.38328 8.49194 9.06625 9.75903 10.14903 11.12187 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.005009 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.966429 B = 5588.068028 C = 6956.987927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.215 3.785 4 N -0.494 5.494 5 C -0.031 4.031 6 C -0.058 4.058 7 N -0.446 5.446 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.161 4.161 11 C -0.151 4.151 12 C 0.529 3.471 13 O -0.553 6.553 14 N -0.580 5.580 15 C 0.130 3.870 16 C -0.169 4.169 17 C 0.164 3.836 18 N -0.593 5.593 19 C -0.355 4.355 20 H 0.054 0.946 21 C -0.017 4.017 22 N -0.912 5.912 23 Si 1.052 2.948 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.138 3.862 28 C 0.086 3.914 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.031 0.969 47 H 0.268 0.732 48 H 0.036 0.964 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 9.599 2.546 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.047 4.047 4 N -0.213 5.213 5 C -0.179 4.179 6 C -0.191 4.191 7 N -0.128 5.128 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.219 4.219 11 C -0.191 4.191 12 C 0.317 3.683 13 O -0.432 6.432 14 N -0.311 5.311 15 C 0.009 3.991 16 C -0.210 4.210 17 C 0.036 3.964 18 N -0.316 5.316 19 C -0.484 4.484 20 H 0.072 0.928 21 C -0.220 4.220 22 N -0.552 5.552 23 Si 0.882 3.118 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.012 3.988 28 C -0.040 4.040 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.646 8.566 0.534 13.674 hybrid contribution 0.340 0.862 2.434 2.604 sum -10.306 9.427 2.968 14.279 Atomic orbital electron populations 1.21723 0.94043 1.02212 1.02213 1.20019 0.96299 0.87606 1.04493 1.23239 1.03709 0.96455 0.81328 1.70227 1.18555 1.04228 1.28273 1.22207 1.06662 0.96368 0.92694 1.22539 1.09592 0.90263 0.96676 1.45595 1.48394 1.11702 1.07134 1.21169 0.95567 1.01423 0.77436 0.87146 1.22250 0.98125 0.98579 1.02924 1.22022 0.98629 1.03667 0.94812 1.20032 0.83771 0.78264 0.86215 1.90614 1.27374 1.49163 1.76083 1.47320 1.08738 1.60948 1.14090 1.20579 1.01746 0.95267 0.81519 1.21831 1.01772 0.96818 1.00546 1.20285 0.92072 0.98694 0.85373 1.43675 1.85582 1.02360 0.99989 1.19893 1.32897 0.92596 1.02987 0.92825 1.25717 0.94970 1.02198 0.99119 1.70837 1.17273 1.28630 1.38413 0.83702 0.75810 0.75492 0.76787 1.20968 1.22011 1.21890 1.22171 0.95810 0.84801 0.96067 1.22073 0.85032 0.97372 0.99561 0.91620 0.92907 0.92049 0.88614 0.90082 0.81658 0.81430 0.88485 0.92490 0.92162 0.88642 0.87449 0.90261 0.92063 0.91175 0.92524 0.93430 0.95115 0.92121 0.94598 0.91369 0.91379 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.90 37.16 0.37 -1.22 16 2 C -0.05 -0.60 6.08 -27.88 -0.17 -0.77 16 3 C 0.22 3.31 7.16 -155.41 -1.11 2.19 16 4 N -0.49 -8.16 11.25 -10.82 -0.12 -8.28 16 5 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 6 C -0.06 -0.74 10.70 -16.56 -0.18 -0.92 16 7 N -0.45 -6.24 2.61 -106.82 -0.28 -6.52 16 8 C 0.15 1.99 2.64 -67.92 -0.18 1.81 16 9 H 0.11 1.62 6.49 -51.93 -0.34 1.29 16 10 C -0.16 -1.90 8.99 37.16 0.33 -1.56 16 11 C -0.15 -2.15 3.74 -27.88 -0.10 -2.25 16 12 C 0.53 8.70 7.39 -10.99 -0.08 8.62 16 13 O -0.55 -10.07 13.40 5.55 0.07 -10.00 16 14 N -0.58 -9.35 2.46 -176.40 -0.43 -9.78 16 15 C 0.13 1.98 5.70 -5.91 -0.03 1.95 16 16 C -0.17 -2.88 5.64 -29.13 -0.16 -3.05 16 17 C 0.16 3.17 5.63 -5.24 -0.03 3.14 16 18 N -0.59 -13.52 2.38 -171.75 -0.41 -13.93 16 19 C -0.35 -9.39 9.12 -15.06 -0.14 -9.53 16 20 H 0.05 1.48 7.96 -52.48 -0.42 1.06 16 21 C -0.02 -0.47 4.60 -17.43 -0.08 -0.55 16 22 N -0.91 -26.05 12.63 55.49 0.70 -25.35 16 23 Si 1.05 24.97 29.99 -169.99 -5.10 19.88 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.14 2.83 5.09 -1.54 -0.01 2.82 16 28 C 0.09 1.32 5.06 -4.37 -0.02 1.30 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.10 7.08 -51.93 -0.37 0.73 16 34 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.10 1.27 5.95 -51.93 -0.31 0.96 16 37 H 0.06 0.59 7.95 -51.93 -0.41 0.18 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.13 7.31 -51.93 -0.38 0.75 16 40 H 0.11 1.80 7.35 -51.93 -0.38 1.42 16 41 H 0.08 1.22 7.12 -51.93 -0.37 0.85 16 42 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 43 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 46 H 0.03 0.54 7.59 -51.92 -0.39 0.14 16 47 H 0.27 7.61 6.37 -40.82 -0.26 7.35 16 48 H 0.04 0.77 7.11 -51.93 -0.37 0.41 16 49 H 0.07 1.59 6.23 -51.93 -0.32 1.27 16 50 H 0.07 0.90 6.38 -51.93 -0.33 0.57 16 51 H 0.07 0.92 7.73 -51.92 -0.40 0.52 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -31.66 392.89 -9.93 -41.59 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.48 Total: 5.14 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.81 Total: 1.32 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.54 Total: -63.86 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.10 Total: 19.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.66 -9.93 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981198188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.663 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds