Wall clock time and date at job start Tue Mar 31 2020 18:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47195 * 2 1 4 4 N 1.30506 * 125.65008 * 270.18278 * 3 2 1 5 5 C 1.34132 * 109.25519 * 180.29252 * 4 3 2 6 6 C 1.34672 * 108.02111 * 359.72107 * 5 4 3 7 7 N 1.35039 * 125.65211 * 90.00381 * 3 2 1 8 8 C 1.46508 * 126.39479 * 359.97438 * 7 3 2 9 9 H 1.09000 * 109.46914 * 359.71556 * 8 7 3 10 10 C 1.53005 * 109.46934 * 239.71638 * 8 7 3 11 11 C 1.53001 * 109.46864 * 119.71575 * 8 7 3 12 12 C 1.50698 * 109.46854 * 185.00159 * 11 8 7 13 13 O 1.21285 * 119.99997 * 359.97438 * 12 11 8 14 14 N 1.34778 * 119.99988 * 180.02562 * 12 11 8 15 15 C 1.48216 * 119.96942 * 179.97438 * 14 12 11 16 16 C 1.47139 * 110.33900 * 102.46989 * 15 14 12 17 17 C 1.53791 * 111.84440 * 58.29738 * 16 15 14 18 18 N 1.43458 * 107.96034 * 281.66818 * 17 16 15 19 19 C 1.36944 * 118.93864 * 273.60865 * 18 17 16 20 20 H 1.08007 * 119.99808 * 27.13770 * 19 18 17 21 21 C 1.38811 * 120.00105 * 207.14078 * 19 18 17 22 22 N 1.31610 * 119.99917 * 26.49887 * 21 19 18 23 23 Si 1.86800 * 119.99932 * 206.50029 * 21 19 18 24 24 H 1.48495 * 109.47229 * 179.97438 * 23 21 19 25 25 H 1.48507 * 109.46920 * 59.99605 * 23 21 19 26 26 H 1.48500 * 109.47022 * 300.00277 * 23 21 19 27 27 C 1.48854 * 122.12630 * 93.88729 * 18 17 16 28 28 C 1.43615 * 119.96825 * 359.97438 * 14 12 11 29 29 H 1.08992 * 109.47432 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46650 * 299.99870 * 1 2 3 31 31 H 1.08997 * 109.47092 * 59.99356 * 1 2 3 32 32 H 1.09001 * 109.46663 * 240.00487 * 2 1 3 33 33 H 1.08995 * 109.47010 * 120.00112 * 2 1 3 34 34 H 1.07992 * 125.98995 * 179.72141 * 5 4 3 35 35 H 1.07992 * 126.59359 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.46684 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47253 * 299.99710 * 10 8 7 38 38 H 1.09000 * 109.47332 * 59.99909 * 10 8 7 39 39 H 1.08999 * 109.46820 * 65.00280 * 11 8 7 40 40 H 1.08993 * 109.46914 * 304.99866 * 11 8 7 41 41 H 1.08998 * 109.32711 * 342.20176 * 15 14 12 42 42 H 1.08997 * 109.32394 * 222.73612 * 15 14 12 43 43 H 1.09001 * 109.00884 * 297.68394 * 16 15 14 44 44 H 1.09005 * 108.94063 * 178.86485 * 16 15 14 45 45 H 1.09000 * 109.76678 * 162.04440 * 17 16 15 46 46 H 1.09007 * 109.80406 * 41.29987 * 17 16 15 47 47 H 0.97004 * 120.00281 * 5.78609 * 22 21 19 48 48 H 1.08992 * 109.48217 * 80.34695 * 27 18 17 49 49 H 1.09003 * 109.48432 * 200.38688 * 27 18 17 50 50 H 1.08999 * 108.87368 * 31.46947 * 28 14 12 51 51 H 1.09007 * 108.87516 * 150.00517 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2828 2.1391 -1.0605 5 6 2.7189 3.3497 -0.6819 6 6 2.7338 3.3850 0.6643 7 7 2.2948 2.1628 1.0973 8 6 2.1439 1.7372 2.4910 9 1 1.7755 0.7118 2.5199 10 6 1.1479 2.6571 3.2002 11 6 3.4993 1.8123 3.1968 12 6 3.3701 1.2593 4.5927 13 8 2.2992 0.8463 4.9846 14 7 4.4443 1.2246 5.4059 15 6 4.3163 0.6811 6.7789 16 6 4.8681 -0.6814 6.8430 17 6 6.3464 -0.7206 6.4207 18 7 6.3987 -0.6679 4.9881 19 6 6.3029 -1.8351 4.2782 20 1 5.7740 -2.6792 4.6957 21 6 6.8855 -1.9333 3.0221 22 7 7.9227 -1.1827 2.7173 23 14 6.1975 -3.1309 1.7644 24 1 6.9911 -3.0441 0.5123 25 1 4.7814 -2.7879 1.4773 26 1 6.2725 -4.5125 2.3038 27 6 6.5599 0.6137 4.2484 28 6 5.7119 1.7144 4.9413 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.0076 4.1549 -1.3411 35 1 3.0339 4.2175 1.2832 36 1 1.0360 2.3407 4.2372 37 1 1.5163 3.6826 3.1713 38 1 0.1823 2.6037 2.6973 39 1 3.8261 2.8510 3.2462 40 1 4.2315 1.2271 2.6405 41 1 3.2637 0.6577 7.0609 42 1 4.8587 1.3231 7.4729 43 1 4.2926 -1.3290 6.1816 44 1 4.7809 -1.0507 7.8649 45 1 6.8059 -1.6441 6.7728 46 1 6.8732 0.1365 6.8404 47 1 8.3322 -0.6227 3.3954 48 1 7.6102 0.9047 4.2500 49 1 6.2195 0.4858 3.2208 50 1 5.5388 2.5250 4.2335 51 1 6.2729 2.1030 5.7914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981198188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:45 Heat of formation + Delta-G solvation = 29.412755 kcal Electronic energy + Delta-G solvation = -31250.471172 eV Core-core repulsion = 27378.844628 eV Total energy + Delta-G solvation = -3871.626545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.17595 -41.38878 -38.96691 -36.79338 -36.10675 -34.76301 -34.53663 -32.74920 -31.75774 -29.66777 -29.54803 -28.82573 -26.89255 -25.57177 -24.90805 -24.37127 -23.24705 -21.91631 -21.54197 -20.35676 -19.82255 -19.35310 -18.58867 -17.56736 -17.40059 -16.89486 -16.42543 -16.13073 -15.91120 -15.84336 -15.47688 -15.28362 -15.19417 -14.79840 -14.52297 -14.44528 -14.32889 -14.25836 -13.94871 -13.83561 -13.75680 -13.25323 -13.05515 -12.89852 -12.74271 -12.60717 -12.54887 -12.52023 -12.27718 -12.08770 -12.06270 -12.00467 -11.90784 -11.80571 -11.33018 -11.06132 -10.79989 -10.59326 -10.42053 -9.64561 -9.28311 -8.89946 -8.22367 -5.39353 1.09113 1.49979 1.50594 1.54667 1.66139 1.73696 2.17274 2.20183 2.59247 3.15379 3.35372 3.41684 3.49741 3.58271 3.67050 3.83433 3.94941 4.06400 4.09268 4.15156 4.20365 4.28158 4.29971 4.37569 4.44900 4.46969 4.48241 4.61842 4.64350 4.67502 4.67940 4.76517 4.82118 4.83882 4.94098 4.96095 4.97960 5.02706 5.13491 5.16067 5.17572 5.22268 5.40654 5.42923 5.67247 5.85909 5.87835 6.22285 6.37884 6.44736 7.10424 7.12792 7.16285 7.80443 8.18048 8.99631 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.005009 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.966429 B = 5588.068028 C = 6956.987927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 C 0.193 3.807 4 N -0.526 5.526 5 C -0.053 4.053 6 C -0.049 4.049 7 N -0.446 5.446 8 C 0.152 3.848 9 H 0.091 0.909 10 C -0.150 4.150 11 C -0.141 4.141 12 C 0.524 3.476 13 O -0.573 6.573 14 N -0.584 5.584 15 C 0.128 3.872 16 C -0.153 4.153 17 C 0.159 3.841 18 N -0.608 5.608 19 C -0.350 4.350 20 H 0.035 0.965 21 C -0.061 4.061 22 N -0.937 5.937 23 Si 1.088 2.912 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.279 1.279 27 C 0.143 3.857 28 C 0.097 3.903 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.187 0.813 35 H 0.204 0.796 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.025 0.975 44 H 0.085 0.915 45 H 0.029 0.971 46 H 0.059 0.941 47 H 0.258 0.742 48 H 0.023 0.977 49 H 0.032 0.968 50 H 0.097 0.903 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 11.748 4.002 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C -0.069 4.069 4 N -0.246 5.246 5 C -0.200 4.200 6 C -0.182 4.182 7 N -0.129 5.129 8 C 0.048 3.952 9 H 0.109 0.891 10 C -0.207 4.207 11 C -0.182 4.182 12 C 0.313 3.687 13 O -0.454 6.454 14 N -0.314 5.314 15 C 0.007 3.993 16 C -0.194 4.194 17 C 0.032 3.968 18 N -0.331 5.331 19 C -0.480 4.480 20 H 0.053 0.947 21 C -0.259 4.259 22 N -0.579 5.579 23 Si 0.915 3.085 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.205 1.205 27 C 0.017 3.983 28 C -0.028 4.028 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.204 0.796 35 H 0.221 0.779 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.044 0.956 44 H 0.103 0.897 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.051 0.949 50 H 0.115 0.885 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.403 10.719 2.028 15.781 hybrid contribution 0.598 0.165 2.047 2.139 sum -10.805 10.884 4.074 15.868 Atomic orbital electron populations 1.21655 0.92294 1.03252 1.02021 1.20072 0.97840 0.86945 1.03805 1.23521 1.04523 0.97168 0.81734 1.70190 1.19561 1.05558 1.29242 1.22698 1.07083 0.96295 0.93913 1.23104 1.07930 0.90378 0.96758 1.45660 1.48236 1.12043 1.06936 1.21102 0.95614 1.01079 0.77370 0.89111 1.22140 0.97747 0.99069 1.01757 1.21942 0.98305 1.04796 0.93126 1.20384 0.83613 0.77909 0.86818 1.90609 1.28236 1.49901 1.76619 1.47455 1.08694 1.60768 1.14482 1.20689 1.02220 0.94568 0.81819 1.21631 0.99128 0.97616 1.01004 1.20438 0.93744 0.99025 0.83557 1.43885 1.85734 1.02152 1.01378 1.19969 1.31183 0.93591 1.03260 0.94710 1.26599 0.95114 1.03393 1.00810 1.70921 1.18637 1.30149 1.38193 0.83201 0.75460 0.74896 0.74981 1.21748 1.21275 1.20483 1.22065 0.96054 0.85422 0.94777 1.21941 0.84263 0.95685 1.00925 0.89975 0.92933 0.92248 0.88954 0.91023 0.79568 0.77919 0.89584 0.90400 0.91855 0.85492 0.90268 0.90240 0.88337 0.95558 0.89685 0.95237 0.92292 0.93105 0.95869 0.94943 0.88496 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.90 71.98 0.71 -2.23 16 2 C -0.05 -1.30 6.08 29.85 0.18 -1.12 16 3 C 0.19 5.93 7.16 138.13 0.99 6.92 16 4 N -0.53 -17.30 11.25 -188.13 -2.12 -19.42 16 5 C -0.05 -1.42 11.87 83.52 0.99 -0.43 16 6 C -0.05 -1.15 10.70 83.09 0.89 -0.26 16 7 N -0.45 -12.02 2.61 -491.88 -1.28 -13.30 16 8 C 0.15 3.92 2.64 44.99 0.12 4.04 16 9 H 0.09 2.71 6.49 -2.39 -0.02 2.69 16 10 C -0.15 -3.18 8.99 71.98 0.65 -2.53 16 11 C -0.14 -3.81 3.74 29.85 0.11 -3.69 16 12 C 0.52 16.37 7.39 87.66 0.65 17.02 16 13 O -0.57 -20.25 13.40 -3.05 -0.04 -20.29 16 14 N -0.58 -17.33 2.46 -830.40 -2.04 -19.37 16 15 C 0.13 3.49 5.70 84.23 0.48 3.97 16 16 C -0.15 -4.97 5.64 29.04 0.16 -4.81 16 17 C 0.16 5.95 5.63 87.21 0.49 6.44 16 18 N -0.61 -27.75 2.38 -697.31 -1.66 -29.41 16 19 C -0.35 -18.95 9.12 84.03 0.77 -18.18 16 20 H 0.04 1.99 7.96 -2.91 -0.02 1.96 16 21 C -0.06 -3.40 4.60 84.86 0.39 -3.01 16 22 N -0.94 -54.87 12.63 21.65 0.27 -54.60 16 23 Si 1.09 51.72 29.99 68.60 2.06 53.78 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 27 C 0.14 5.81 5.09 86.70 0.44 6.25 16 28 C 0.10 2.73 5.06 87.69 0.44 3.17 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.07 2.04 7.08 -2.39 -0.02 2.03 16 34 H 0.19 3.93 8.06 -2.91 -0.02 3.90 16 35 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.09 2.08 5.95 -2.39 -0.01 2.07 16 37 H 0.08 1.33 7.95 -2.39 -0.02 1.31 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.13 2.55 7.31 -2.39 -0.02 2.53 16 40 H 0.08 2.66 7.35 -2.39 -0.02 2.64 16 41 H 0.08 2.23 7.12 -2.39 -0.02 2.21 16 42 H 0.10 2.03 8.05 -2.39 -0.02 2.01 16 43 H 0.03 1.07 7.91 -2.39 -0.02 1.05 16 44 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.03 1.19 8.02 -2.39 -0.02 1.17 16 46 H 0.06 1.88 7.59 -2.38 -0.02 1.86 16 47 H 0.26 15.11 6.37 -92.70 -0.59 14.52 16 48 H 0.02 1.00 7.11 -2.39 -0.02 0.99 16 49 H 0.03 1.54 6.23 -2.39 -0.01 1.52 16 50 H 0.10 2.20 6.38 -2.39 -0.02 2.18 16 51 H 0.10 2.20 7.73 -2.38 -0.02 2.18 16 Total: -1.00 -71.60 392.89 4.74 -66.87 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 1.09 Total: 24.18 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 8.46 Total: 11.56 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -6.83 Total: -136.09 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.04 Total: -20.29 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.06 Total: 53.78 kcal Total: -71.60 4.74 -66.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981198188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.279 kcal (2) G-P(sol) polarization free energy of solvation -71.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds